Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------ANAC58                                <---------TOE2(3)                         <---------ATHB12   <---------ANAC58                  <---------ARR14(2)        <---------ANAC46                  --------->GLK1(2)     <---------GLK1(1)                  --------->ARR14(2) <------MYB83                                             <------                 --------->RVE1(1)   <------MYB46(1)                                    ------>ZmHOX2a(2)         <---------AHL20(2)     <---------TOE1(3)                                     <---------ARR11(3)         --------->AHL20(2)--------->WOX13(1)                  <----------DOF2     <-------MYC3 -------DOF2   --------->AHL20(2)  <--------P    <---------ZAT14                   ------->MYC3   tttgtttgtattaaaaaaaaaatccgaatcaattaaggttggatttgtgtgtgaagtattgtggtctttgtattcaaattttgcacatgatcgtctatgt  2487000                                                                                                    <                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                  --------->ANAC55(2)                             ---                     ----------->HVH21   --------->GLK1(2)                                        <--                --------->ANAC58         <---------ARR11(3)    <---------ARR14(2)                 ---            <---------YAB1     --------->ALFIN1   <---------ANAC55(2)           <---------GLK1(1)<---    --------->ICU4 <----------DOF2       --------->ARR11(3)    --------->ARR14(2)      --------->MYB52(1) -----RAV1(1)   --------->ANAC58        <---------GLK1(2)  <---------LBD16     <---------ARR14(2)----   tgggccataatgttatgcaagctttgacacagagtgttgccaaaatctcgatacttattcactcggatttagagaattgtggatttcgctaatggaggga  2487100                                                                    ---------->DOF2         --------------->AGL15                                 <----------DOF2         <---------------AGL15                                 <---------------AGL15         --------->TOE2(3)                                     --------------->AGL15         --------->TOE1(3)                                   ------>MYB46(1)        =======================================================================MADS_MADS        ----------------->AGL3                               ------>MYB83  --------->AHL20(1)      <-----------GT1                                      --------->DEAR4(1) -------TEIL                                               ------->GAMYB   --------->ARR11(3) -----ZmHOX2a(2)                                           --------->DEAR3(1)--------->AHL20(1) ------>ARR11(3)                                          --------->DEAR3(2) <---------AHL20(1) -------ARR11(3)                                          <------NtERF2    <---------ARR11(3) ------>AGP1                                             ------>NtERF2----------->GT1 -------ARR14(2)                                         <---------ATERF1(1) --------->ARR11(3) ------>ARR14(2)                                        --------->DEAR3(1) <---------AHL20(1) ------GLK1(1)        <---------YAB1        ---------->DOF2--------->DREB2C(2)     ----------------->AGL1 ----->GLK1(1)  ----------->GT1 ----------->RAV1(1)     <---------ALFIN1--------->AHL20(2)-----------   gatccatgttaccttaaatagtttatatttgagccaacatgagagccaaagaacatcgccaccgactttaaaaagaaaatattttgcccaaatggatatt  2487200                                                                    --------->DAG2                                                                   ---------->DOF2                                           <---------TOE2(3)  <---------ANAC46                                          --------->MYB52(1)--------->LBD16                                       --------->YAB1  <---------ANAC58                                      <---------YAB1   <---------ANAC58                            --------->ATHB12 --------->ATHB12 ----------->GT1                       <    ----------->GT1     ------>ZmHOX2a(1) <-----------GT1  <---------ANAC46      --------->YAB1   --- >GT1  <---------AHL20(2)  <---------YAB1 --------->YAB1  <---------LBD16---------->DOF2   <---------LBD16   acagagtagttatttgcaataacgtcctcatgtttgggttataataacgatttgatttcttacggggtataaagcaaaaggaatcaaaacgtttggggaa  2487300                                                 <---------YAB1              --------->AtMYB61           --------->HSFB2a(2)                  --------->AHL20(2)         *TSS           <---------HSFC1(1)               <------ZmHOX2a(1)         --------->YAB1           <---------HSFB2a(2)            --------->ANAC58           <---------ATHB12          <---------LBD16             --------->YAB1               --------->WOX13(1)              --        --------->GLK1(2)           <---------WOX13(1)           ------------>CBF               <---- ----------->GT1                   <------------CBF<---------AHL20(2)--------->ICU4          ------>ZmHOX2a(1) ---------TOE2(3)       ----------->GT1   <---------TOE2(3)  --------->DEAR3(1)   <---------MYB52(1) ------>ICU4            <---------ANAC46  --------->ANAC58--------->DEAR3(1)--------->MYB46(3)  -----   ataatgtaatattctggaaacaaaacgcgtataatcggattgataaggaatattatatcatcgccgatgcaatcatcgaccatcgttttgttttcctgtc  2487400                            <---------HSFB2a(2)                        --------->ARR14(2)                             --------->ARR14(2)                        <---------ARR14(2)    ------>NtERF2<---------ANAC58                  -------- ------->ANAC46         <---------GLK1(2)   --------->At4g35610 <----------DOF2              <------- -----ETT(2)     <---------ZAT6          <---------At4g35610    <---------DAG2      <---------YAB1  < ---->ETT(2)--------->TOE2(3)         <-------TEIL         <---------ANAC58       <---------At4g35610   tacccaaaaacaaaccctagtgtccgaattctcgacaaaattcatcggctccaaattccattcgtgctttttgaattcgcgttcttctgattcaagatgt  2487500                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                   ==                                                                                                  ---                                                                                                  <--                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                     <-----------ARR10                                                                                     <---------ARR11(3)                     <-----------TGA1                                      --------->ANAC58      <---                     <-----------HVH21                                  <---------WRKY38(1)      ----                    --------->bZIP60(2)                                 <---------WRKY12    =========     <---------At4g35610   --------->GLK1(1)                           ============================HOX2a_HOX2a     ----------->RAV1(2)   <---------GLK1(1)     <---------YAB1        <------ZmHOX2a(2)    <-------- ->ARR11(3)         --------->ANAC46       ------>NtERF2<---------At4g35610--------->ANAC46 ------>ZmHOX2a(1) --ARR11(3) --------->KAN4(2)             --------->DEAR3(1) <-----------GT1         --------->ARR11(3) ----------DOF2    ------>ZmHOX2a(1)   --------->DEAR3(1)  --------->YAB1  --------->ANAC58 <--------   ttctttcacctggtcattctcctcgtcagatttcttctccatcgccgtcttcttattccgatgataccctccgatcaacgcctcgcagttcttcctcgga  2487600      --------->HSFB2a(2)      ------>ZmHOX2a(1)      --------->LBD16      <---------HSFB2a(2) --------->KAN4(2) ---------KAN4(1) -------->KAN4(1)                                                     --------->ARR11(3) -----ZmHOX2a(2)                                                    ----------->ARR10           ----- ============HOX2a_HOX2a                                        --------->HSFB2a(2)          -------- ------>ARR11(3)                                                <---------HSFB2a(2)    <---------ANAC58 -------ARR11(3)                                         --------->ANAC58              <---------ANAC58 ------GLK1(1)                                     <-----------RAV1(1)<---------ARR11(3)    <-------- ----->GLK1(1)                             <------ZmHOX2a(1)  <---------ATHB12 <---------ANAC58------ =====HOX2a_HOX2a                  --------->HSFB2a(2)   --------->ANAC58      <---------ANAC58<----- -HSFB2a(2)         --------->MYB52(1)     ===================================HOX2a_HOX2a   --------- -LBD16--------->ANAC46            <---------HSFB2a(2)<---------REM1(1)<------ZmHOX2a(2)<----------DOF2   gatcattcctcgaaaccctagaaaacggatgagagttctcgatgaggacgcttatgttgaagcaatcgagaagatcatcgagcgtgattactttccagat  2487700                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)  ----------->HVH21                               ------      xxxxxxxxxxxxxxxx>smallRNA(i)            --------->LBD16                                  <----- ---->CCA1(2)              --------->ARR14(2) <-----------HVH21                              <------- ->LBD16                   <---------ARR14(2)--------->ANAC55(2)          --------->At4g35610<------- -HSFB2a(2)          --------->ATHB12        --------->ANAC46           <-----------RAV1(2)  -------- --->ARR14(2)  ------>ZmHOX2a(2)             <---------ANAC55(2)--------->LBD16              <------- ----ARR11(3)--------->ARR14(2)     --------->At5g28300     <---------ARR14(2)              <-------- >HSFB2a(2)  <---------ARR14(2)    ----------->GT1          --------->ARR14(2)   <---------GLK1(2)---   ataactaagcttagggatcggctcgattggatccaagcggtgaaaacccgtgacccgattcaaatccgagatgcccagttgaagattatcgagaggcgtg  2487800                                                          <---------DAG2                                                          <---------------AGL15                                                          <----------DOF2                                                      ------>ZmHOX2a(2)                                                    <---------AGP1                                                    <---------ARR14(2)                                                    <---------ARR11(3) --->ALFIN1             --------->ARR14(2)         <---------CCA1(2) -NtERF2                <---------ARR14(2)       --------->HSFB2a(2) --ANAC46       <-----------RAV1(1)              ------>ZmHOX2a(1) --ANAC58  <---------ICU4                        --------->LBD16 ->ALFIN1  --------->YAB1                        <---------HSFB2a(2) --ANAC58 <---------ATHB12                      <---------LBD16                                 ----- ---------------TaNAC69(2)       --------->At5g28300--------->ARR14(2)         <----------DOF2 ------ ------->DOF2 <---------ICU4    ----------->GT1----------->RAV1(2)       <-----------GT1------->TEIL   gaaagaaggcgaatcatcatgttggagataccgagggtaaaactcaaactcctggatctacttttctgagaaatttcactcctttagatgaatttgatgg  2487900  Previous    Next  AGI:  At3g07780.1    Description:  protein binding / zinc ion binding. similar to tropomyosin-related [Arabidopsis thaliana] (TAIR:AT5G48160.1); similar to tropomyosin-related [Arabidopsis thaliana] (TAIR:AT5G48160.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41189.1); similar to Potyvirus VPg interacting protein [Pisum sativum] (GB:AAP22955.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Protein of unknown function DUF1423, plant (InterPro:IPR004082) Range:  from: 2484475    to: 2487030    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g07790.1    Description:  DGCR14-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO41203.1); contains domain PTHR12940 (PTHR12940) Range:  from: 2487375    to: 2489226    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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