Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->ANAC55(1)                                       <---------ZAT18                                     --------->At4g35610                               <---------AHL20(2) --------->ANAC55(2)                           <---------AHL20(2)     <---------ANAC55(2)             --------->REM1(1)                         --------->CCA1(2)        --------->ANAC58           <-----------GT1                        --------->ARR11(3) --------->TOE1(3)         --------->ANAC58                    ---------->DOF2  <---------At4g35610             --------->ANAC58           --------->ANAC46--------->AHL20(2)     --------->ANAC46 <---------ARR14(2)     <---------GLK1(2)  <---------ARR11(3) --------->TOE2(3)       --------->ARR14(2)    <---------ALFIN1 ------>YAB1    --------->AtLEC2--------->YAB1    --------->ANAC58<------ZmHOX2a(1)   ------->GAMYB   tcacaacgattctcagccatgaaaaagatataaataatcagcgaacattaacacgtactatagcaagaggaacccaattttactacaacccaaacctgtt  2463600                 --------->YAB1                 ----------->GT1                --------->DAG2           --------->ANAC58           --------->ANAC58         --------->GLK1(1)         <---------GLK1(1)        --------->ARR14(2)                                                           ================        <---------ARR14(2)                                                           ------>ZmHOX2a(1)   --------->TOE2(2)                                                          ---------->DOF2   <----   <---------LBD16 --------->AHL20(2)                                        --------->YAB1    ------   --------->TOE1(2)     <---------TOE2(3)                <---------TOE2(3) <---------YAB1     ------  ----------->RAV1(2) --------->ICU4              ----------->GT1       <----------DOF2        ------ ------->TEIL  ---------->DOF2            --------->MYB52(1)           --------->TOE2(3)     <-------GAMYB   ctgaacctgggatacccaaaagtaattaagaaaaacaaaacaaaaaacagagtagaaattaagaaaaatggaacctttatcaaagtcctgaattgggttg  2463700                                            --------->GLK1(2)                                           <---------GLK1(2)                                  <---------ANAC46             ====================================HOX2a_HOX2a             <------ZmHOX2a(2)<---------HSFC1(2)        ---------->DOF2       --------->HSFC1(2) ===================HOX2a_HOX2a   <---------ANAC58                             <---------ANAC58 -----WRKY18(1)   ------->GAMYB   <---------ANAC58       <---------At4g35610   <---------ANAC46 --->WRKY38(1)  -------->P--------->LBD16 <------ZmHOX2a(1)                    <---------ANAC58 ----->HVH21--------->ARR11(3)--------->HSFB2a(1)        --------->At4g35610 --------->ARR11(3) --->WRKY12 <---------ARR11(3)<---------HSFB2a(1)        --------->ZAT2  <------ZmHOX2a(1)   actggtgagacaaagatcaacccagacccagaaatttcgtagcaggaatctgtagaatcagctgtattaagtagaggaatttcttggaacagagtcgaga  2463800                                                                                       ------>MYB46(1)                                                                                       ------>MYB83                                                                                       -------->P                                                           <-------GAMYB           ------>MYB46(1)                                                      <---------O2                 ------>MYB83                                                      <---------TGA1a            --------->AtMYB61                                                      --------->O2  --------->ANAC46  ------>ZmHOX2a(1)                                                      --------->TGA1a    <---------HSFC1(2)                       <---------ANAC46 <---------ICU4<---------ANAC46   --------->HSFC1(2)                       <---------ANAC58--------->ICU4 <---------ANAC58  <---------ARR14(2)                       <---------ANAC58------>ZmHOX2a(1)  <-----------RAV1(1) <---------ALFIN1                       <---------ANAC55(2)            =============MYC_MYB    <-----------GT1                       <---------ANAC55(1)            <---------ANAC55(1)--------->HSFB2a(1)                       --------->ANAC55(2)<---------YAB1  --------->ALFIN1 <-----------GT1             <------ZmHOX2a(1)    <---------ANAC58    <---------ANAC55(2)<---------HSFB2a(1)            <----------ID1        <---------ANAC58    <---------ANAC58  --------->ARR14(2)       <---            --------->ZAT18      <------NtERF2        ==========================================MYC_MYB   gagagagaggtaagaggactaagttgcgtaatggtgtcgtccttatgactaatgagacgtgtgttgttccaccgaattttccaccttcctaccaaaatca  2463900                           --------->AHL20(1)                           <---------AHL20(2)                           --------->AHL20(2)                          --------->AHL20(2)                     ----------->GT1                     <----------ID1                    ----------->GT1                       <---------ICU4             <---------ANAC58                           --------->GLK1(2)             <---------ANAC58                   ----------->GT1                                    --             ----------------->AGL1            ----------->GT1                             --------->YAB1       <----------DOF2<------ZmHOX2a(1)    <------ZmHOX2a(1)                  --------->ICU4       <- ------YAB1  ----------->GT1              ----------->HVH21    *TSS<----------DOF2    ------------>CBF   atattgagactttgtgcgtaaataggaaaaaaattggatttgataggacagggaaaataatctttgtaacttttagtgccaaaattaagacaataagagt  2464000                 <---------GLK1(2)                <---------ZAT2                <---------At4g35610                                                               <--           <---------ARR14(2)                                                                   -----           --------->REM1(2)                                                                  <------ZmHOX2a(1)        <---------ANAC58                                                                  ---------->DOF2        <---------ANAC55(1)                                                              <---------AHL20(2)        <---------ANAC55(2)               --------->ZAT18                           <---------AHL20(2)        --------->ANAC55(2)            <---------ANAC58                             --------->AHL20(2)        <---------ANAC58               <---------ANAC46                            --------->YAB1 <--        <---------ANAC46               <---------ANAC58                            <---------AHL20(2)       <-------TEIL                <------------CBF                                --------->AHL20(2)       <-----------------------TaNAC69(2) <---------ZAT14              <----------DOF2  --------->AHL20(2)    <---------HSFB2a(1)      <---------TOE1(2)               <---------ZAT14       <---------AHL20(1) ------->HSFB2a(2)       <---------At4g35610        ---------->DOF2 --------->GLK1(2)   <---------AHL20(2) --------HSFB2a(2)     --------->REM1(1)  --------->ETT(2)  --------->ALFIN1   --------->ZAT6--------   tttggaagatgcgtgtccagcttctacatctcacgtttattgtgtggacagttcgaaagagagtgttgagcatcttttctaacaataaaattaaaaggat  2464100    <---------ANAC58                                <---------DAG2    <---------ANAC58                          --------->At5g28300              <---------MYB46(3) -------AHL20(2)                        <---------AHL20(2)               <<<<<<<<<<<<<<<<<LFY-------- ---->CCA1(2)                   <-----------GT1     <----------DOF2--------->YAB1           --------- -------YAB1          ---------->DOF2  --------->AHL20(2)        --------->ANAC58          ---------- --->GT1<---------MYB52(1) ----------->GT1   ----------->GT1     --------->ANAC58 <-------TEIL      <   ataattgctcgttagtaatccacttaaaggggtttaaccaatttaaacggtaaacttttttaagagcaagcaaaacaacaatggttcatttcaaaaagga  2464200                                                                                    <------NtERF2                                                                                    --------->ZAT2                                                                                    --------->At4g35610                                                                                    <---------At4g35610                                               <---------ALFIN1                    <---------ATERF1(1) --->GT1                                      --------->ANAC46         ------>ZmHOX2a(2) >DAG2                              ----------->TGA1       <---------ANAC58 --------->ATHB12 >DOF2              --------->TOE2(2)       --------->REM1(1)       --------->ATHB12<---------ZAT2 -- ----------ID1    <---------TOE2(3) ----------->HVH21      <---------ANAC58<------ZmHOX2a(2)       <-   aaatgacaaaactacatattaacatatgaacaaaacttgtgacgcttcaccacatagtttggcttctacatgatcggatcataggcagctccaaaaccga  2464300       ------>MYB46(1)       ------>MYB83      <---------ALFIN1     <---------MYB55(2)     --------->MYB46(3)     <---------MYB111(1)     <---------MYB46(2)     <---------MYB111(2)     --------->DEAR3(1)     --------->AtMYB61    --------->ANAC58                                                                               <-    --------->ANAC46                                                                             <---    --------->ANAC58                                                                       <---------ANAC58  <---------ALFIN1                                                                         <---------ANAC46 ------->ARR14(2)           <---------ICU4                                                 <---------ANAC58 --------ARR14(2)<---------YAB1        --------->YAB1          <<<<<<<<<TBF1    <-----------RAV1(1)--   agttccacccacccagactactattggaagtcattactctatcacaaaaccattcgtctagtttcttcttcccaagtatgaaatgttgcatttgcgagtt  2464400                                            --------->ANAC58                                      ------>ZmHOX2a(1)                                      --------->LBD16                                    ----------->RAV1(2)                                   ------>NtERF2 --------->ICU4                                  --------->DEAR3(1)                                  <---------ALFIN1                       <----------DOF2    <--------                <---------ANAC58 --------->ATERF1(1)            --------->At4g35610     <----------DOF2 --------At4g35610               --------->DEAR4(2)            --------->DEAR3(1) <---------ANAC58 ------RAP2.6(2)<---------ANAC58<---------RAP2.3(1)          <---------At5g28300  <---------ANAC58 ------->At4g35610      --------->ZAT14     --------->ANAC58<-----------GT1   <----------DOF2      --   cggctgaaaacgaatatttcttgctcttcagtagcgcctcctgagcaagtaatgacttccattcaccgctcaactctttcctttccttggctctaaggct  2464500  Previous    Next  AGI:  At3g07700.1    Description:  ABC1 family protein. similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.2); similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41145.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66349.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41148.1); contains InterPro domain ABC-1 (InterPro:IPR004147); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 2459497    to: 2463963    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07710.1    Description:  similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT2G25650.1) Range:  from: 2464342    to: 2464779    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version