Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <---------YAB1                     <---------ICU4                     --------->YAB1                    <---------YAB1                    --------->ICU4                  --------->YAB1                  <---------ICU4                 <---------YAB1                 --------->ICU4               <---------ICU4              --------->ICU4              <---------YAB1            --------->YAB1            <---------ICU4                                           <---------YAB1            --------->ATHB51                                     <---------GLK1(1)            <--------HAHB4                                       --------->GLK1(1)            -------->ATHB1                              --------->ARR14(2)                  ---------           <---------ATHB51                             <---------ARR11(3)                 ---------- ----->MYB52(1)--------->YAB1                           <---------ARR14(2)        --------->ANAC58 ->ANAC58  <---------ATHB12                             --------->ARR11(3)        --------->ANAC58 ->ANAC58  --------->ICU4                               <---------GLK1(2)        --------->DAG2 >DOF2   --------->WOX13(1)                           ----------->ARR10         ---------->DOF2  <---   aacagatttatcaattattattattattatctgagactgagagagagagagagagggagattttctgaattctgattcgtcgaaaagcatcaaaaaagtg  2441300                                                        ----------->ARR10                                               <-----------HVH21                                              <---------O2                                              --------->bZIP60(2)                                              --------->ANAC46                                       --------->HSFC1(2)              --------->ATHB51     ----------->GT1 <---------ANAC46              <---------ICU4    --------->O2  --------->O2                           ----------->GT1        --------->ARR14(2)      <---------O2  <---------TGA1a                    <---------ANAC58 >DAG2  <---------ARR14(2) --------->ANAC58   --------->TGA1a<---------ARR11(3)  <---------ANAC58 >DOF2  --------->GLK1(2)  --------->ANAC58 <---------ALFIN1 --------->ARR11(3)<---------ANAC58 ------DOF5.7(2)<---------------AtSPL8 <---------HSFC1(2) <---------GLK1(2)    <---------ANAC58   aacgcttgagaatccattatggcacaaactagccacttggtaacttccacgtcgcgagtagattatcttcaatactcgcatgcgcgtgagtaaaaaacat  2441400                                                              <---------ANAC58                                                        <---------YAB1                           ----                                                        <---------AHL20(2)              ----------->RAV1(1)                              --------->ARR11(3)        --------->AHL20(1)             --------->MYB46(3)                              <---------AHL20(1)        --------->AHL20(2)            --------->TCP15(2)           <----------DOF2    <---------ARR11(3)  --------->AHL20(2)                  --------->TCP23        <-----------GT1 ----------->GT1       --------->TOE2(3)   --------->ZAT6     --------->PCF2   <----------DOF2      --------->YAB1    --------->CCA1(1)   <---------ANAC58       <---------TCP15(1)  <---------DAG2<----------DOF2  <----------DOF2 --------->YAB1<----------DOF2       <---------TCP20  --------->TOE2(3) <---------YAB1   <---------TOE2(3) --------->AHL20(2)           <---------PCF2 <-   acaacctttttttcttttctttctaatagtaatatctttaagaaatatccataaaaattttattgctttcactataaatacgagagggacccacaatacc  2441500            <-----------GT1           --------------->AtSPL8       <----------DOF2                         ---------->DOF2       <---------DAG2         --------->AHL20(2)     ------->TEIL<---------DAG2   --------->AHL20(2)  --------->ANAC58        <----------DOF2  ---------->DOF2  --------->ANAC58      ---------->ID1--------->AHL20(2)                                       ------  --------->ANAC46   ---------->ID1   --------->YAB1                    <----------DOF2        <----- ----->ANAC46<---------ZAT18  <---------AHL20(2)                  --------->MYB59     <---------GLK1(2) --------REM1(2) <----------DOF2  <---------AHL20(2)       ----------->GT1 <---------YAB1  <---------   ctacacgaacttttttgcactttttcgtctttttaattaataaaaaaaagaaagagaaggaaggaaattaggcacttttgataaatcagattatgtcaga  2441600                              --------->MYB46(3)                             --------->ANAC58                             --------->ANAC58                            ------>MYB46(1)                           <---------ALFIN1                          --------->MYB46(3)                          <---------MYB111(2)                          --------->DEAR3(1)                          <---------MYB55(2)                         --------->ANAC46                         --------->ANAC58                         --------->ANAC58                     <---------ALFIN1                    --------->ARR14(2)                    <---------ARR14(2)                   ------>NtERF2                  <---------ZAT18                  --------->LBD16                 <---------ANAC58                 <---------ANAC46             <----------DOF2------>MYB83          ----------------->AGL1          <-----------------AGL1                                                          ----------- --->At4g35610   <---------ANAC58                        <-----------GT1--------->LBD16--------->ANAC58 ----At4g35610  <---------LBD16 <------------CBF  <---------AHL20(2)   --------->HSFB2a(2)--------->RAP2.6(2) --HVH21 ---------->ID1<---------ALFIN1      <---------ATHB12  *TSS  ------>ZmHOX2a(1) --------->ANAC58   agcgcctacatgtccctttgcggacacacccacccattgtctatccattcatttttttttttcatttcttcctccagagagagagagagaagccacaaca  2441700                                --------->HSFB2a(2)                                <---------HSFB2a(2)                                --------->HSFC1(1)                             --------->ARR11(3)                                          <---------HSFB2a(2)              >>>>>>>>>TBF1  --------->ARR14(2)                                          --------->HSFB2a(2)        >>>>>>>>>TBF1  >>>>>>>>>TBF1                                        ---------->ID1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <---------AHL20(2)<---------LBD16     >>>>>>>>>TBF1  >>>>>>>>>TBF1                               <----------DOF2  ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  >>>>>>>>>TBF1  >>>>>>>>>TBF1 <---------LBD16               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >RAV1(1)  >>>>>>>>>TBF1     <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->GLK1(2)   agaagaagaagaagaagaagaagaagaagaagttctggaatagtcatcatcttctctgtttctaggctttgtttatttgtctctaaagtttctggattca  2441800                                               <-------GAMYB                                              --------->MYB52(2)                                          <---------ANAC58                                          --------->ANAC55(2)                                          <---------ANAC55(1)                                          <---------ANAC58                                          <---------ANAC46                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                <-----------ARR10                                --------->ARR14(2)                                <---------ARR14(3)                                --------->ARR11(3)                                            -------                                --------->ARR14(3)                                         --------->YAB1                                <---------ARR11(3)                                        <---------YAB1                                <---------ARR14(2)                                       <---------AHL20(2)                               <------ZmHOX2a(1)                                    <---------YAB1                     <---------ZAT18      <---------ANAC55(2)                  ======================                     --------->ZAT18  <----------DOF2   <-----------GT1        <----------DOF2<------          --------->ARR11(3)  --------->HSFC1(2)     --------->MYB52(2)   <----------DOF2--------->AHL20(2)          <---------ARR11(3)  <---------HSFC1(2)   <---------ANAC46       ===========================   acttctgaagaagatagtagtagtccacaagaaggatcttctttacgtgagttgtttgtttctcttctccctctgtcttttcttttctgattttaataat  2441900 --------->O2 <---------TGA1a <---------ANAC58                                                    <---------YAB1 --------->TGA1a <---------ANAC58       <---------ZAT6                          <------MYB83 <---------O2  <-----------GT1    --------->ATHB12                              <---------MYB46(3) -->YAB1       <---------AHL20(2) --------->ATHB51        --------->ATHB12      <------MYB46(1) ==========bZIP_DOF              <---------AHL20(2)  <---------YAB1            <---------AtMYB61 ---ICU4  <---------YAB1         <---------YAB1  <---------WOX13(1)           <--------P ==========bZIP_DOF       <-----------RAV1(1)  --------->ATHB12     <XXXXXXXXXXXXXXXXXXXXMIR839   cccaagtgtgttcttattttcttgctatctgttgtataattggtgttagtgattgattattcattgtatatcgatgaagggttggttttgatttttgttg  2442000          --------->ATHB12         <---------YAB1                             <---------WOX13(1)      <----------DOF2                         <---------WOX13(1)     ------>ZmHOX2a(2)                      --------->ATHB12   <---------ARR11(3)                      --------->ICU4                                 <---------RVE1(1)   --------->ARR11(3)                      <---------YAB1                                <---------GLK1(2)   <---------ARR14(2)                    --------->YAB1                    <---------AHL20(2)   <---------AGP1                       <---------YAB1      ---------->DOF2--------->ATHB12   --------->ARR14(2)                   --------->ICU4   ------>ZmHOX2a(2)<---------AHL20(2)  <------  <---------CCA1(2)                   --------->YAB1<---------KAN4(2) <---------MYB52(1) --------->ARR11(3)   aattggatcttttgatttggggttttaaaacttgttcggatgatgatgattgggattgatccaaaagttttcgttatttattggaaattcagattttttc  2442100                                                                                                   <-                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                            <--------                                                <---------ARR14(2)                          ---------                                --------->ARR11(3)    <---------ANAC46                     <---------AHL20(2)                                --------->GLK1(2)     ----------->GT1        <---------MYB46(3)------                                <---------ARR11(3)------>ZmHOX2a(2)   <---------ANAC58     --------->AHL20(2)                               <---------GLK1(2)--------->ARR11(3)    <---------ANAC58 <---------AHL20(2) -----GT1                   --------->YAB1 <-----------GT1     <----------DOF2         --------->AHL20(2)   gattcagttccatttgaactagtaagtcaaacaaaatctctagatttactgatctggggtttatactttgaagcttgagttgttgttgttttattaattt  2442200  Previous    Next  AGI:  At3g07650.1    Description:  COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding. Identical to Zinc finger protein CONSTANS-LIKE 9 (COL9) [Arabidopsis Thaliana] (GB:Q9SSE5;GB:Q94A77); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G48250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41128.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 2441663    to: 2444538    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version