Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                    <-------TEIL >ZmHOX2a(2)                                                                       --------->ARR14(1) -->CCA1(2)                <----------DOF2                                         --------->CCA1(2) -->At4g35610           <-----------GT1                                           <---------GLK1(2) ->ARR11(3)         -------->HAHB4                                                <---------ARR14(2) --ARR11(3)         <--------ATHB1                      ------>MYB46(1)           --------->ARR14(2) --ARR14(2)         <---------ICU4                 <-----------GT1              ----------->ARR10 ->AGP1            <---------ATHB51         <---------HSFB2a(2)             <---------ZAT14  -------- ->ARR14(2)        <---------ATHB12      <---------ARR14(2)                 --------->ZAT18  -------- --AGP1            --------->ICU4        --------->ARR14(2)                 --------->ZAT14 --------- ->ARR10        ------>ZmHOX2a(1)   --------->MYB52(1)  ------>MYB83--------->YAB1--------->ARR11(1)   gaatttcaggctaaactcctaataattcactttcttagaaacggttcttgaagttaccaactatgcacaaacacaatgtgtacagattcgcatgcaatca  2422300     ------->TEIL                                                               <---------LBD16     --------->ARR14(2)                                                   <---------ARR14(2)  --------->LBD16                                                         <---------GLK1(2)  ------>ZmHOX2a(1)                                                       <---------ARR11(3) ---ATHB12                                                                --------->ARR14(2) ->ANAC58                                                           --------->AGP1                  - ->ANAC58                                       ------>ZmHOX2a(2)--------->ANAC46                  -- >WOX13(1)--------->ANAC46             --------->GLK1(2) --------->YAB1 ----------->ARR10     <------   attcctgaatctacaaaacaagattacttctattcatcgacaatctttgatctaagctataatctccacagaactagatactctcggaattaagaaccga  2422400                                                                              --------->LBD16                                                                              ------>NtERF2                                                                       ------>NtERF2        --------->GLK1(2)                                             --------->LBD16  --------->HSFB2a(2)     <---------TOE2(3)                                              ------>MYB46(1)    <---------HSFB2a(2) -------->ATHB12    --------->MYB46(3)                              ------>MYB83      <---------LBD16 ------->ICU4 ---------->DOF2                           <---------At4g35610 <---------LBD16         < ---MYB59    <---------ATHB12 ---------->DOF2           --------->At4g35610--------->MYB52(1)      --   attgattaagaatcaataaagaacgactgaggcaaagaagacagagagagagagagagagctcacatacctcccgacttccggcgattcccagaagcctt  2422500               ----------->RAV1(1)            --------->ANAC58            --------->ANAC58          ---------->DOF2       --------->LBD16                                                           ---------->DOF2      --------->ANAC58                                                    <---------At4g35610      --------->ANAC58                                            --------->ANAC58         --------->ZAT14     <---------LBD16                                              --------->ANAC58    --------->ZAT18 ----------->HVH21             --------->MYB52(1)               <<<<<<<<<TAC1  <------ZmHOX2a(2) -----------HVH21        ----------->GT1                     --------->ZAT14 --------->At4g35610  >>> ---->ZmHOX2a(1)        --------->DAG2                  ---------->DOF2   --------->At4g35610  >>>>>>   cctgtgacacggagaagcaacatcgaaaggtaagaacggagtagcgaaatcagtagaataaagaacactcgaaatcagcagatcaaagaccactgaagaa  2422600                                                           --------->LBD16                                                           ------>NtERF2                                                          --------->ANAC46                                                 <---------At4g35610                                                 --------->At4g35610                                          --------->ATHB12--------->ANAC58     <-----------GT1                            <---------ANAC46     --------->ZAT2  >>>>>>>>>WRKY18                        <------ZmHOX2a(1)<---------YAB1   --------->ANAC58   <---------GLK1(1)    >>>>>>>>>TBF1 --------->ATHB12    --------->GLK1(2)<---------ARR14(2)  <------ZmHOX2a(1) >>>>>>>>>TBF1 <----------DOF2--------->ALFIN1   <---------ZAT2 ----------->HVH21 >>>>>>TBF1   --------->TOE2(3)      <---------GLK1(2) --------->ARR14(2)--------->MYB59        ----- >>>TBF1   <-----------GT1 <------ZmHOX2a(1)<---------WOX13(1)  --------->WRKY12 --------->ANAC46   gaagaagaagaagttacctttgattaggaggagtgtatcgattctgattggagctcgaatccgccattgacgagttaggatttacgcagttttttcagag  2422700                                                --------->ZAT14                                                <---------WRKY38(1)                                                <---------ZAT14                                                *TSS                                                <---------WRKY12                                             ------->GAMYB                                         --------->ETT(2)                                       <-----------HVH21                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   <---------ARR14(2)                                   <---------AGP1                                   --------->ARR14(2)                                   --------->AGP1                                   <---------ARR14(3)                                   --------->ARR11(3)                                   <---------ARR11(3)                                  <---------GLK1(1)                                  --------->GLK1(1)                                 ----------->ARR10                                <------ZmHOX2a(1) <---------At4g35610                            --------->LBD16 --------->MYB46(3)                          <---------LBD16<---------ETT(2)                    --------->DAG2 ---->ZAT14              --------->MYB52(1)<<<<<<<<<<<<WRKY18               ---------->DOF2   aactctctctctctctctctctctctctaccggaggagatctgtcaacagtcaactgtttaacgcatagagaacgttgaaaagcgtcttctcgtctgaag  2422800                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC46                                        ------->TEIL                               <---------ANAC55(2)                             <---------ANAC58                                      <---------ANAC58                  <---------ARR14(2)    -------->P                          --------->MYB52(1)              --------->LBD16<---------ANAC58                               <-----------GT1             --------->ANAC46<---------ANAC46                --------->ANAC58<---------TOE1(3)           --------->ANAC46  <---------ANAC55(2)             --------->ANAC58<---------TOE2(3)    <--        <---------REM1(2)    --------->ANAC55(2)     <----------DOF2  --------->LBD16            ----      --------->YAB1        ------>NtERF2        --------->ZAT18 <----------DOF2   <---------ANAC58<-      <---------ICU4    ----------->HVH21        <---------ZAT18<---------DAG2     <---------ANAC55(1) ------------>CBF --------->ARR14(2)   <-----------GT1     <-----------GT1  <---------DOF5.7(2)<-----   tcgttcaatcttcacgcgcgaattcttcgacgcgtgtttatcaacctctcgcgcgcttttattacgcctttccgaaattaacgtttcgtgttcaatttcc  2422900           ------>MYB83           ------>MYB46(1)        --------->MYB46(3)  --------->At4g35610  <---------At4g35610 -------MYB52(1) ----->LBD16    ------->TEIL                               <----------DOF2 --------MYB52(1)      <---------GLK1(1)           --------->ATHB12                          -------- ----LBD16--------->MYB52(1)         --------->ARR11(3)    <---------DAG2                  <---------   ggtttgctgaaccaactgtatgtagatttctggttgaaacatctactggtccaccattggactttatgggccttactacatttttgggcccaatattgta  2423000                              --------------->AtSPL3                              ------>ZmHOX2a(2)                              --------------->AtSPL8                    --------->LBD16                  <---------LBD16                <---------ARR14(2)    --------->At4g35610                --------->ARR14(2)  --------->MYB46(3)            ----------------->AGL2--------->ARR14(2)            ------>ZmHOX2a(2)<------ZmHOX2a(2)            ----------------->AGL1------->TEIL           <------ZmHOX2a(2)--------->ARR14(2)          --------->ARR14(2)<---------AGP1          ------->TEIL     <---------CCA1(2)          <---------ARR14(2)<---------ARR14(2)                                              <--------    ----------->HVH21 <---------ARR14(2)                                                   *TSS  --------->At4g35610 --------->ARR14(2)                                                   <---------DAG2  <---------At4g35610 <---------GLK1(2)                         ---------->DOF2         <---------ALFIN1 --->GT1  <XXXXXXXXXXXXXXXXXXXXMIR826--------->ANAC46   ----------->HVH21             <-----------GT1 ---CBF<---------WOX13(1)  <---------ARR14(1)    <---------AtMYB61         ----------------------->TaNAC69(2)   atttagctgatggatccaaaaccggaatcggatctgtacccgctccatcgtgaggtctctcacagcgaaagaagggttttgagggttttcacacctttcg  2423100                          <---------MYB46(3)                        <---------ANAC58                        <---------ANAC58                        <-------GAMYB                       <---------MYB46(3)                       <------MYB83                       <------MYB46(1)                      --------->MYB59                     <---------MYB52(1)                --------------->AGL15                    <-----------HVH21            <----------DOF2                <----------DOF2                     ------->TEIL       <---------ANAC58     ------>ZmHOX2a(1)<---------AtMYB61     ---------->DOF2<-----------RAV1(2)  --------->ARR14(2) --DOF2      <---------ARR11(3)<----------DOF2   <---------REM1(1)     <---------ANAC58    <---------   ctgtttcctcgtcaatttctttgtttggttgttctttcttcgcatccaaagatgaagctcgtcaggtactgtttcgttctcagttcttcttttctttaga  2423200  Previous    Next  AGI:  At3g07580.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48335.1); similar to Os02g0609400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047394.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44467.1) Range:  from: 2420908    to: 2422748    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07590.1    Description:  small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative. similar to small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative [Arabidopsis thaliana] (TAIR:AT4G02840.1); similar to putative small nuclear ribonucleoprotein D1 [Brassica napus] (GB:ABC00745.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 2423091    to: 2424172    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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