Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------HSFB2a(2)   <---------MYB59  ----------------->AG ------->TEIL ------->TOE1(2) --------SPL7 ------>ANAC58 ------>ANAC58              <---------AHL20(2)        ------>ZmHOX2a(1)                         ----- -------HSFB2a(1)           ---------->DOF2          --------->TOE2(3)                      -------->P ------>HSFB2a(1)<------ZmHOX2a(1)                --------->ARR14(2)                    <---------At4g35610 ----------->AtSPL3        <---------ATHB12       <---------ARR14(2)        <---------GLK1(2)-------- ------TOE1(2)  ----------->GT1             --------->GLK1(2)           ---------->DOF2 --------->At4g35610   acgtaccaaaattgtagaaggagaattcaataaatcgagaccctaaaatctgaatcctcaaaaaaaaaaaaaaaaaaagaatttcaattgagctaacctg  2413300                                                                      ---------->DOF2                                                                    --------->TOE1(3)                                                                    --------->TOE2(3)                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                                  -------->P                                                                 <---------ALFIN1                                                                 ------>NtERF2                                                              ------>NtERF2                                                             --------->ANAC58                                                             --------->ANAC58                                                             --------->ANAC46                                                           <---------ATERF1(1)        ------>NtERF2                                     --------->DEAR3(1)  <------NtERF2       --------->ANAC58                                   ----------->HVH21  --------->LBD16       --------->ANAC46      --------->ATHB12    <------MYB46(1)--------->DEAR3(1)       --------->ANAC58     <---------YAB1       <------MYB83--------->DEAR3(1) ---->ZAT2             --------->CCA1(2)       <--------P --------->ANAC46 <---------LBD16      ----- --->RAV1(2)      ---------->DOF2        --------->ARR11(3)------>NtERF2   --------->ZAT18     <-----   caggctgagacgccatatatcaaagagacgacgattggagagagctcttgttggtaatctccgacgccaacctcaagcgcggagagagagagatagagag  2413400                                                                                         --------->ANAC55(2)                                                                                 *TSS    <---------ANAC55(2)                                                                                <---------TOE1(3)                                                                                --------->MYB59       --------->ALFIN1                          <------ZmHOX2a(1)          <----------DOF2 ------->TEIL     <---------O2                        ---------->DOF2   --------->MYB52(1)   <---------TOE2(3) ---->CCA1(2)                    <---------PCF5 ----------->GT1          --------------->AGL15 -----ID1                 <------ZmHOX2a(1)    ----------->GT1       <----------DOF2  <---------YAB1   acaagagaggtgggatgaagaagacagaggagaagggacctcgaaaagagaggaaaaaacaaaacagattactttcttcttttaggttattatgtatcag  2413500                                                   <---------ARR14(2)                                                   ------->TEIL                                                   --------->ARR14(2)                                                <---------ANAC58                          <------ZmHOX2a(1)               ------>ZmHOX2a(1)                <---------ANAC46                   --------->LBD16             <---------ICU4                     <---------ANAC58               --------->ARR14(2)         <---------YAB1          <---------ICU4 --------->ANAC55(2)            <---------ARR14(2)       --------->YAB1   --------->DAG2         <---------TOE2(3)               --------->GLK1(2)    ----------->GT1    ---------->DOF2     <------------CBF              >>>>>>>>>MYB2---------->DOF2   cccctatagttataatccttacccaaaaagcctcttaattactaaaattgacgtatttgactctcaaaaatagaaaaccaaaatccgaaaaaggatagag  2413600                                                                             <------NtERF2                                                                             --------->LBD16                                                                            --------->RAP2.6(2)                                                                           <---------LBD16                                                                           --------->ATERF1(1)                                                                          --------->ATERF1(1)                                                                          <------NtERF2                                                                          ------>NtERF2                                                                          <---------ATERF1(1)                                                                         <---------SPL7                                                                         <---------RAP2.3(1)                                                                         <---------ATERF1(1)                                                                         ------>NtERF2                                                                         <---------DEAR3(2)                                                                        <---------RAP2.6(2)                                                                        <---------DEAR3(1)                                                                        <---------RAP2.3(2)                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                       --------->At4g35610                                                                       --------->ATERF1(1)                                                                       <---------At4g35610                                --------->GLK1(2)                      <------NtERF2                             --------->ICU4                           <---------ATERF1(1)                        --------->ANAC58                              <---------RAP2.3(1)                    --------->YAB1                                   <---------DREB2C(2)                   <---------YAB1                                  <-----------HVH21               xx                <---------AHL20(2)                   --------->At4g35610--------->DEAR3(1)     ------                <---------YAB1--------->HSFB2a(1) *TSS   >>>>>>>>>TBF1<---------ORA47(2)     <-------                --------->AHL20(2)                --------->At4g35610<---------RAP2.3(3)    <--------    --------->AHL20(2)  --------->ANAC58          <---------At4g35610<---------DEAR3(1)    <---------    <---------AHL20(2)  --------->ANAC46   <---------LBD16    --------->At4g35610         --------->ANAC46   atgaaattatatgtttatattattataagcaaagattccatatttcgagggaagcagaagaagaagctcagtcggcggccggattaatctccccatcatc  2413700                                      <---------ARR14(2)                                     <---------CCA1(2)                                <---------ARR14(2)                            <------NtERF2                                     <---------YAB1                           ------>NtERF2                                    <---------AHL20(2)                          --------->LBD16                                   --------->AHL20(2) xxxxxxxxxxxxxx>smallRNA(i)--------->LBD16                                 --------->ICU4  --------->O2 --->At4g35610            <---------LBD16                           --------->LBD16 <------ZmHOX2a(1) --ICU4                  <---------LBD16                          <---------LBD16 <---------TOE2(3) -ATHB12              <---------ARR14(2)     <---------GLK1(1)<----------DOF2--------->AHL20(1) --HVH21             ------>ZmHOX2a(1)--------->ARR14(2)      <---------DAG2--------->ATHB51   tctctctctccctctctctgttcctatcccggcgaattcatatctgaatttcccaaaattcaaacttttccggtggaattattttaggaaaccaagtgac  2413800                                                                            <------NtERF2                                <---------ANAC58                           ------>NtERF2                                <---------ANAC46                           <---------ATERF1(1)                                <---------ANAC58                          <---------DEAR3(1)                                --------->DEAR3(1)                        ----------->HVH21                               <------NtERF2                              --------->DEAR3(1)                              <---------ERF1                             <------NtERF2                              ------>NtERF2                             <---------ATERF1(1)                              <---------RAP2.3(1)                       ------>NtERF2                             <---------ATERF1(2)                       <---------DEAR3(1)                             <---------RAP2.6(2)                    --------->MYB52(2)                             --------->ATERF1(2)                --------->HSFC1(2)                             <---------DEAR3(1)           --------->YAB1<---------RAP2.3(1)                             <---------DREB2C(2)         <---------ATHB12--------->ATERF1(1)                             <---------RRTF1(2)<---------ANAC46 <------MYB46(1)                             <---------RRTF1(3)<---------DEAR3(1)  <-------TEIL                             <---------ANAC46<-----------HVH21  <------MYB83--------->ATERF1(1)                 <---------ANAC58           --------->ANAC46    <---------HSFC1(2)                 <---------ANAC46        ------->TEIL  --------->WOX13(1)--------->RAP2.3(1)                 <---------ANAC58        --------->ARR14(2)     <---------HSFB2a(1)                --------->MYB59--------->ATERF1(1)    --------->MYB46(3)<---------DEAR3(2)            --------->DAG2   <---------RAP2.3(2)     <---------KAN4(2) <---------At1g77200    --------->At4g35610      <---------RAP2.3(3) <------NtERF2  --------->HSFB2a(1)                 -    <---------At4g35610<---------AHL20(2)<---------ARR14(2)  <------ZmHOX2a(1)                      <   ttcttaagctccaaaaattgggtatttaatggcggcgagcgcgaacccgtcggggaacaatcaggaaggttcgtcggcgacgcagaaggtatcgtcttct  2413900         --------->RAP2.3(1)         --------->ATERF1(1)         <------NtERF2        <---------RAP2.3(1)        <---------ATERF1(1)        <---------DEAR4(2)        ------>NtERF2        <---------ERF1        <---------ORA47(2)       <---------ATERF1(2)       --------->ATERF1(2)       <---------RAP2.3(2)       <---------RAP2.3(3)                                        <------NtERF2       --------->DEAR3(1)                                        --------->LBD16       <---------DEAR3(1)                                        <---------MYB46(3)       <---------ANAC46                                         <---------ANAC46      --------->DEAR4(2)                                       <------NtERF2      --------->DREB2C(1)                                      --------->ATERF1(1)      <---------ABI4(1)                                        <---------------------WRI1      <------NtERF2                                            <---------At4g35610      --------->ATERF1(1)                                      <---------LBD16      --------->RAP2.3(1)                                     <---------RAP2.6(1)      --------->At4g35610                                     <---------DEAR4(2)      <---------At4g35610                                     <---------RAP2.3(1)     <---------RRTF1(1)                                       <---------ORA47(2)     <---------ATERF1(1)                                      <---------ERF1     <---------RAP2.6(1)                                      <---------ATERF1(1)     <---------DEAR4(2)                                       <---------RRTF1(1)     ------>NtERF2<---------At4g35610                         ------>NtERF2     <---------ERF1                                          <---------ANAC46     <---------ORA47(2)                                      <---------RRTF1(3)     <---------RAP2.3(1)                                     <---------RRTF1(2)    <---------RAP2.3(2)                                      --------->ALFIN1    <---------RAP2.6(2)                                      <---------RAP2.3(3)    <---------RAP2.3(3)                                      <---------DEAR3(1)    <---------RRTF1(2)                                       <---------RAP2.6(2)    <---------RRTF1(3)                                       --------->ATERF1(2)    --------->ATERF1(2)                                      --------->DEAR3(1)    <---------ANAC46                                         <---------RAP2.3(2)    <---------ATERF1(2)                                      <---------ATERF1(2)    --------->ALFIN1             --------->LBD16            <---------ABI4(1)    --------->DEAR3(1)      <---------GLK1(1)               ------>NtERF2    <---------DEAR3(1)      --------->GLK1(1)               --------->RAP2.3(1)   <------NtERF2 <---------DEAR3(1)                         --------->ATERF1(1)   --------->ATERF1(1)  --------->At5g28300                 <------NtERF2   <---------ABI4(1) <---------ZAT2                        <---------ATERF1(1)            <----------CDC5   --------->RAP2.3(1) <---------ANAC46                    --------->DEAR3(1)            <----------DOF2  <---------RAP2.3(1)--------->ZAT2<---------ETT(2)       --------->ALFIN1               <-------GAMYB  <---------ATERF1(1)--------->ZAT14                      --------->ATERF1(1)           <------NtERF2  <---------DEAR4(2) <---------ZAT14   --------->YAB1     <------NtERF2                ------>NtERF2 <---------DEAR3(1)  <---------At4g35610                  <---------DEAR3(1)          <---------ANAC58 <---------RAP2.3(2) --------->At4g35610                 ------>NtERF2                <---------ANAC46 -------->At4g35610--------->ATERF1(1)<---------ATHB51   <---------LBD16              <---------ANAC58 ---------At4g35610<------NtERF2<---------ANAC46        --------->ALFIN1        --------->ATHB12   tcagcggcggcggcgaatggcgctgctgtgaattccgtcgataatggtggaaatacaggcgcggcggcggataattcacagacgattggcgcgttgaggc  2414000                                                               --------->ANAC58                                                               <---------ANAC55(2)                                                               --------->ANAC58                                                               --------->ANAC55(2)                 --------->ATHB12                          <-----------HVH21          =============================HOX2a_HOX2a      <---------AtLEC2          ------>ZmHOX2a(2)                             <---------ANAC58         <---------GLK1(1)                              <---------ANAC58         <------ZmHOX2a(2)                              <---------ANAC46         --------->GLK1(1)                         <---------ARR14(2)         ==============================HOX2a_HOX2a <---------ARR11(3)        <---------ARR11(3)                         --------->ARR14(2)                             ---        --------->ARR11(3)                         --------->ARR11(3)                            ----        <---------ARR14(2)                        <---------HSFB2a(1)                            ----        --------->ARR14(2)         <---------KAN4(1)--------->ARR14(1)                           <---    <---------LBD16                --------->KAN4(1)--------->CCA1(2)                          <-----    --------->LBD16               <---------KAN4(2)--------->ARR11(1)                          <-----   <---------LBD16              <------ZmHOX2a(1)----------->ARR10                      ------->TEIL   ataatccagggatctctaccgattggactcttgaggaacaatctctattggaagatttgcttgtcaagtaatcttctcgctctctctctgtatgtttaag  2414100    <---------GLK1(1)   --------->ARR14(2)   <---------ARR14(2) ------>CCA1(2)                                                                                ------ ----->ARR11(3)                                                                              -------- ----->ARR11(1)                                                                              -------- ------ARR14(2)           <----------DOF2              ----------->GT1           <---------AtLEC2   < ----TOE1(3)        <---------TOE1(2)               <---------REM1(1)         <-----------GT1-------- ----TOE2(3)    >>>>>>>>>>>>>>>>>LFY        ----------->HVH21          ----------->GT1  <----------DOF2   atttggatttgctgttttatccaatgttctttctatctgactagatgtgactagatgtagtgaattctgcgatatgttattttccatggcctttcaagca  2414200  Previous    Next  AGI:  At3g07560.1    Description:  APM2/PEX13 (ABERRANT PEROXISOME MORPHOLOGY 2); protein binding. similar to unknown [Populus trichocarpa] (GB:ABK93770.1) Range:  from: 2411327    to: 2413481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07565.1    Description:  DNA binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46224.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005) Range:  from: 2413650    to: 2416290    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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