Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        ---------->DOF2                                                        <-----------ARR10       --------->ZAT18                                           <---------WOX13(1)     --------->WOX13(1)             ----       --------->DAG2             --------->ANAC58      <---------ARR11(3)      <---------ZAT18<-----     ---------->DOF2              --------->ANAC58      --------->GLK1(2)      --------->ANAC46<----- --------->YAB1                 ---------->DOF2         --------->ARR11(3)  ---------->CDC5<---------At4g35610 --REM1(1)                    --------->ANAC58     --------->ANAC58  --------->YAB1        --------->At4g35610 --ANAC46                     --------->ANAC58     --------->ANAC58 <---------ATHB12    ---------->DOF2   gaataagaaaaggcatcaaattgcaatccaaaacgaaagcatctaattgaatcaagaaaatctaaggccaatcaaagctaagcgcaatccaaaagctgat  2413100                                                                                                   --                                                                                                   <-                             ========================================================================                        --------->AHL20(2)                                                        ---                        <---------AHL20(2)       --------->WOX13(1)                               <--       --------->ATHB12--------->AHL20(2)    ----------->GT1                                      --- -->ZmHOX2a(2)  --------->TOE2(3)     <------MYB46(1)           <----------DOF2                  <--- ------ARR10    ------->GAMYB----------------->AGL3       <-----------GT1        ----------->HVH21--- ----ARR11(3)   --------->TOE1(3)     <------MYB83 <---------ATHB12    <---------ATHB12          ----   ctcatcaattgattacaaccctaaattaaaatccaattgtaggtcgaaagttaatcaatttcacaactttcaaatcaaacaactcgacgggtctcatcga  2413200           <---------HSFB2a(2)   <---------MYB59  ----------------->AG ------->TEIL ------->TOE1(2) --------SPL7 ===================MADS_MADS ------>HSFB2a(1) -------HSFB2a(1)           <---------AHL20(2)        ------>ZmHOX2a(1)                         ----- ------>ANAC58              ---------->DOF2          --------->TOE2(3)                      -------->P ------TOE1(2)   <------ZmHOX2a(1)                --------->ARR14(2)                    --------->At4g35610 ------>ANAC58  ----------->GT1                   <---------ARR14(2)        <---------GLK1(2)-------- ----------->AtSPL3        <---------ATHB12 --------->GLK1(2)           ---------->DOF2 <---------At4g35610   acgtaccaaaattgtagaaggagaattcaataaatcgagaccctaaaatctgaatcctcaaaaaaaaaaaaaaaaaaagaatttcaattgagctaacctg  2413300                                                                      ---------->DOF2                                                                    --------->TOE1(3)                                                                    --------->TOE2(3)                                                                  ------>MYB83                                                                  -------->P                                                                  ------>MYB46(1)                                                                 ------>NtERF2                                                                 <---------ALFIN1                                                              ------>NtERF2                                                             --------->ANAC58                                                             --------->DEAR3(1)                                                             --------->ANAC46                                                           ------>NtERF2        ------>NtERF2                                     --------->DEAR3(1)       --------->ANAC46                                   --------->ANAC46 <---------LBD16       --------->ANAC58      --------->ATHB12    <------MYB83--------->ANAC58--------->LBD16       --------->ANAC58     <---------YAB1       <------MYB46(1)--------->DEAR3(1) ---->ZAT2             --------->CCA1(2)       <--------P ----------->HVH21--------->ZAT18      ----- --->RAV1(2)      ---------->DOF2        --------->ARR11(3)<---------ATERF1(1)<------NtERF2    <-----   caggctgagacgccatatatcaaagagacgacgattggagagagctcttgttggtaatctccgacgccaacctcaagcgcggagagagagagatagagag  2413400                                                                                         <---------ANAC55(2)                                                                                 *TSS    --------->ANAC55(2)                                                                                <---------TOE2(3)                                                                                --------->MYB59       --------->ALFIN1                          <------ZmHOX2a(1)          <----------DOF2 ------->TEIL     <---------O2                        ---------->DOF2   --------->MYB52(1)   <---------TOE1(3) ---->CCA1(2)                    <---------PCF5 ----------->GT1          --------------->AGL15 -----ID1                 <------ZmHOX2a(1)    ----------->GT1       <----------DOF2  <---------YAB1   acaagagaggtgggatgaagaagacagaggagaagggacctcgaaaagagaggaaaaaacaaaacagattactttcttcttttaggttattatgtatcag  2413500                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                                   ------->TEIL                                                <---------ANAC58                          <------ZmHOX2a(1)               ------>ZmHOX2a(1)                --------->ANAC55(2)                --------->LBD16             <---------ICU4                     <---------ANAC46               --------->GLK1(2)         <---------YAB1          <---------ICU4 <---------ANAC58               --------->ARR14(2)       --------->YAB1   --------->DAG2         <---------TOE2(3)               <---------ARR14(2)    ----------->GT1    ---------->DOF2     <------------CBF              >>>>>>>>>MYB2---------->DOF2   cccctatagttataatccttacccaaaaagcctcttaattactaaaattgacgtatttgactctcaaaaatagaaaaccaaaatccgaaaaaggatagag  2413600                                                                             <------NtERF2                                                                             --------->LBD16                                                                            --------->RAP2.6(2)                                                                           --------->ATERF1(1)                                                                           <---------LBD16                                                                          --------->ATERF1(1)                                                                          <---------ATERF1(1)                                                                          <------NtERF2                                                                          ------>NtERF2                                                                         <---------DEAR3(2)                                                                         ------>NtERF2                                                                         <---------SPL7                                                                         <---------ATERF1(1)                                                                         <---------RAP2.3(1)                                                                        <---------RAP2.3(2)                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                        <---------RAP2.6(2)                                                                        --------->DEAR3(1)                                                                       <------NtERF2                                                                       <---------At4g35610                                                                       --------->ATERF1(1)                                --------->GLK1(2)                      --------->At4g35610                             --------->ICU4                           <---------ORA47(2)                        --------->ANAC58                              <---------RAP2.3(1)                    --------->YAB1                                   <---------RAP2.3(3)                   <---------YAB1                                  <-----------HVH21               xx                --------->AHL20(2)                   --------->At4g35610<---------DEAR3(1)     ------                <---------YAB1--------->HSFB2a(1) --------->At4g35610<---------DREB2C(2)     <-------                <---------AHL20(2)                <---------At4g35610<---------DEAR3(1)     <--------    <---------AHL20(2)  --------->ANAC46          *TSS   >>>>>>>>>TBF1<---------ATERF1(1)  <---------    --------->AHL20(2)  --------->ANAC58   <---------LBD16    --------->At4g35610         --------->ANAC46   atgaaattatatgtttatattattataagcaaagattccatatttcgagggaagcagaagaagaagctcagtcggcggccggattaatctccccatcatc  2413700                                      <---------ARR14(2)                                     <---------CCA1(2)                                <---------ARR14(2)                            <------NtERF2                                     <---------YAB1                           --------->LBD16                                  <---------AHL20(2)                          <---------LBD16                                   --------->AHL20(2) xxxxxxxxxxxxxx>smallRNA(i)------>NtERF2                                   --------->ICU4  --------->O2 --->At4g35610            --------->LBD16                           --------->LBD16 <------ZmHOX2a(1) --ICU4                  <---------LBD16                          <---------LBD16 <---------TOE2(3) -ATHB12              <---------ARR14(2)     <---------GLK1(1)<---------DAG2--------->ATHB51 --HVH21             ------>ZmHOX2a(1)--------->ARR14(2)      <----------DOF2--------->AHL20(1)   tctctctctccctctctctgttcctatcccggcgaattcatatctgaatttcccaaaattcaaacttttccggtggaattattttaggaaaccaagtgac  2413800                                                                            --------->ATERF1(1)                                <---------ANAC46                           ------>NtERF2                                <---------ANAC58                           <---------ATERF1(1)                                <---------ANAC58                          --------->DEAR3(1)                                --------->DEAR3(1)                        <---------DEAR3(1)                               --------->ATERF1(1)                        ----------->HVH21                              ------>NtERF2                              --------->RAP2.3(1)                              <---------ERF1                            <---------ATERF1(1)                              <---------RAP2.3(1)                       <---------DEAR3(2)                             <---------RAP2.6(2)                       <---------At1g77200                             --------->ATERF1(2)                    --------->MYB52(2)                             <---------RAP2.3(2)                <---------HSFB2a(1)                             <---------RRTF1(2)           --------->YAB1<---------RAP2.3(1)                             <---------DREB2C(2)         <---------ATHB12--------->ATERF1(1)                             <---------RRTF1(3)        --------->WOX13(1)<------NtERF2                             <---------ATERF1(2)      --------->MYB46(3)------>NtERF2                             <---------RAP2.3(3) <------NtERF2  --------->HSFB2a(1)                 <---------ANAC58              <---------DEAR3(1)  <-------TEIL                 <---------ANAC58        --------->ARR14(2)     <---------HSFC1(2)                 <---------ANAC46        ------->TEIL<---------KAN4(2) <---------DEAR3(1)                --------->MYB59<------NtERF2--------->ANAC46    <------MYB83<------NtERF2            --------->DAG2   <---------DEAR3(1)<---------ANAC46 <------MYB46(1)    --------->At4g35610      <---------ANAC46<-----------HVH21  --------->HSFC1(2)                  -    <---------At4g35610<---------AHL20(2)<---------ARR14(2)  <------ZmHOX2a(1)                      <   ttcttaagctccaaaaattgggtatttaatggcggcgagcgcgaacccgtcggggaacaatcaggaaggttcgtcggcgacgcagaaggtatcgtcttct  2413900         --------->RAP2.3(1)         --------->ATERF1(1)         <------NtERF2        <---------DEAR4(2)        ------>NtERF2        <---------ORA47(2)        <---------RAP2.3(1)        <---------ERF1        <---------ATERF1(1)       --------->DEAR3(1)       <---------RAP2.3(2)       <---------RAP2.3(3)       --------->ATERF1(2)                                        <------NtERF2       <---------ANAC46                                          --------->LBD16       <---------DEAR3(1)                                        <---------MYB46(3)       <---------ATERF1(2)                                      <---------ANAC46      <---------ABI4(1)                                        <---------------------WRI1      <------NtERF2                                            --------->ATERF1(1)      --------->DEAR4(2)                                       <---------LBD16      --------->RAP2.3(1)                                      <------NtERF2      --------->ATERF1(1)                                      <---------At4g35610      <---------At4g35610                                     <---------DEAR4(2)      --------->At4g35610                                     <---------ERF1      --------->DREB2C(1)                                     <---------RAP2.3(1)     <---------RRTF1(1)                                       ------>NtERF2     ------>NtERF2<---------At4g35610                         <---------ATERF1(1)     <---------RAP2.6(1)                                      <---------RRTF1(1)     <---------DEAR4(2)                                       <---------RAP2.6(1)     <---------ATERF1(1)                                      <---------ORA47(2)     <---------ORA47(2)                                      --------->DEAR3(1)     <---------ERF1                                          <---------RRTF1(2)     <---------RAP2.3(1)                                     <---------RRTF1(3)    <---------RRTF1(2)                                       <---------RAP2.3(3)    <---------RAP2.3(3)                                      <---------RAP2.3(2)    <---------RRTF1(3)                                       --------->ATERF1(2)    <---------RAP2.6(2)                                      <---------RAP2.6(2)    --------->ALFIN1                                         <---------ATERF1(2)    <---------ANAC46                                         <---------DEAR3(1)    <---------RAP2.3(2)                                      --------->ALFIN1    --------->DEAR3(1)                                       <---------ANAC46    --------->ATERF1(2)          --------->LBD16            --------->ATERF1(1)    <---------DEAR3(1)      <---------GLK1(1)               <---------ABI4(1)    <---------ATERF1(2)     --------->GLK1(1)               --------->RAP2.3(1)   <------NtERF2 <---------DEAR3(1)                         ------>NtERF2   --------->ATERF1(1)  --------->At5g28300                 <------NtERF2   <---------ABI4(1) <---------ZAT2                        --------->DEAR3(1)             <----------CDC5   --------->RAP2.3(1) <---------ANAC46                    <---------ATERF1(1)           <----------DOF2  <---------RAP2.3(1)--------->ZAT14                      --------->ATERF1(1)            <-------GAMYB  <---------DEAR4(2) <---------ZAT14   --------->YAB1     <---------DEAR3(1)            <------NtERF2  <---------ATERF1(1)<---------At4g35610                  <------NtERF2                ------>NtERF2 <---------RAP2.3(2) --------->At4g35610                  --------->ALFIN1            <---------ANAC46 <---------DEAR3(1)  --------->ZAT2<---------ETT(2)      <---------LBD16              <---------ANAC58 -------->At4g35610<------NtERF2<---------ANAC46         ------>NtERF2                <---------ANAC58 ---------At4g35610--------->ATERF1(1)<---------ATHB51  --------->ALFIN1        --------->ATHB12   tcagcggcggcggcgaatggcgctgctgtgaattccgtcgataatggtggaaatacaggcgcggcggcggataattcacagacgattggcgcgttgaggc  2414000  Previous    Next  AGI:  At3g07560.1    Description:  APM2/PEX13 (ABERRANT PEROXISOME MORPHOLOGY 2); protein binding. similar to unknown [Populus trichocarpa] (GB:ABK93770.1) Range:  from: 2411327    to: 2413481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07565.1    Description:  DNA binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46224.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005) Range:  from: 2413650    to: 2416290    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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