Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ARR14(2) <-------PIF5 ------->PIF5                                            --------->HSFB2a(2) ---------O2                                             <---------HSFB2a(2) -------->TGA1a                                       --------->GLK1(2)                        ------ ---------TGA1a        --------->LBD16            ------>NtERF2                               ------- -------->O2--------->GLK1(1)                   <------NtERF2                                <------NtERF2 -------->ANAC58     <---------LBD16           <---------RAP2.3(1)               --------->ARR14(2) -------->ANAC58<---------------AGL15          ------>NtERF2                     <---------ARR14(2) -------ALFIN1  <----------DOF2               <---------ANAC46               <---------At4g35610    < ---NtERF2 <---------GLK1(2)            --------->ARR11(3)--------->LBD16    --------->At4g35610   -- --->ANAC46<---------ARR14(2)      --------->YAB1--------->DEAR3(1)     --------->CCA1(2)    <-------   gcacgtcgactcggattcctttaaccggaaaccacaagaatagctcttgcgccgagattccagacaaatcagagatttgagcagaacctatagtccccgt  2388100       <------NtERF2     <---------ANAC58                                                           --------->O2     <---------ANAC58                                                           <---------O2     <---------ANAC46                                                     <---------MYB52(1) --->LBD16                --------->ANAC55(2)                    <-----------ARR10 -->ANAC46                <---------ANAC55(2)                    --------->ARR14(2)         <-------- ---------ICU4            <---------ANAC46                       --------->GLK1(2)          --------- ------->ICU4   ------->TEIL          --------->ANAC58           <---------ARR14(2)    ----------->GT1 --LBD16       <---------CCA1(2)      --------->ANAC58          <---------GLK1(2)<-----------HVH21---   aatattggcgtcgtaatgtatctcagtctcgtatttagcctcgcatgcctgattcaaataaaccgagaatcgtcccgtttcgacgtcgaaggtgaattct  2388200                     --------->LBD16                    --------->LBD16                   --------->HSFB2a(2)                                                             <-                   --------->LBD16                                                                ---               <---------ARR14(2)                                                                <---               --------->KAN4(2)                                                                 ----               --------->ARR14(2)                                                               <----               --------->ARR11(3)                ----------->GT1                                -----              <----------TaMYB80                 <---------ANAC46                              ------              <---------KAN4(1)                ------>ZmHOX2a(2)                              -------              --------->KAN4(1)               <---------GLK1(1)                             ------>ZmHOX2a(2)              --------->GLK1(1)               --------->GLK1(1)                            <------ZmHOX2a(2)              --------->HSFB2a(1)             <------ZmHOX2a(2)                           --------->ARR14(2)              <---------HSFB2a(1)            <---------ARR11(3)                           --------->ARR14(3)              <---------GLK1(1)              --------->ARR14(2)                           --------->ARR11(3)             <---------KAN4(2)               <---------ARR14(2)                           <---------ARR14(2)         <---------HSFB2a(2)                 --------->GLK1(2)                            <---------ARR14(3)         --------->HSFB2a(2)                 --------->ARR14(3)                           <---------ARR11(3)        <---------LBD16                      <---------ARR14(3)                      <------ZmHOX2a(2)        <---------ANAC46                     <---------AGP1                         --------->ARR11(3)     <----------DOF2--------->ANAC46         --------->ARR11(3)                     <---------ARR14(2)    <---------DAG2 <---------HSFB2a(2)      <------ZmHOX2a(1)                   --------->REM1(2)---- <---------ALFIN1 <---------LBD16        <------ZmHOX2a(1)                     --------->ALFIN1<----- <-----------------AGL1                  =============HOX2a_HOX2a             --------->LBD16 <------ -ARR14(2)   ---------->TaMYB80       <---------LBD16                        --------->DEAR3(1)------ >ARR14(2)--------->LBD16             <-----------RAV1(2)                    <---------ANAC46<------- -------->HVH21<---------ARR11(3)<---------MYB52(1)                    --------->GLK1(1) <---------GLK1(1)   ctgacacctttcgggaatatccccgaaggtaatccgtttgccaggaggatctcgtatatagtctcagtctctgatatcgccgtggagatcgagatcccgg  2388300 -----NtERF2 --->NtERF2                                                                              ------>ZmHOX2a(2) ------DEAR3(1)                                                                          ============ ----->DEAR3(1)                                                    <---------At5g28300  <---------GLK1(1) --NtERF2                                                         --------->MYB52(1)    ============= ---->RAP2.3(1)                                                   <-----------GT1       --------->GLK1(1) --->LBD16                                                     --------->ARR14(2)       <------ZmHOX2a(2) -->LBD16                                                      <---------ARR14(2)      <---------ARR14(2) ------->HVH21                                              --------->LBD16            <---------ARR11(3) ----ATERF1(1)                                       <---------YAB1<---------LBD16     --------->ARR11(3) ---LBD16                                  --------->ATHB12--------->HSFB2a(2)         <---------AGP1 >NtERF2           --------->ANAC58     --------->YAB1     <---------HSFB2a(2)         --------->ARR14(2) --LBD16           --------->ANAC58--------->ANAC46 --------->KAN4(2)             >>>>>>>>>WRKY18<---   cgacgagaacgagacatagaaacgcgatttgaacaatacgaagcatcatcggcttattcttcccgaattcacggtttgtgattttgacagatctctctct  2388400                                                                             *TSS                                                               --------->ANAC58          <------ZmHOX2a(1)                                    --------->ANAC58<---------ZAT2       <---------LBD16     <----------DOF2                     --------->ANAC46--------->At4g35610 ================HOX2a_HOX2a   <---------TOE2(3)        >>>>>>>>>TBF1     ----------->HVH21 ================HOX2a_HOX2a   <---------TOE1(3)     >>>>>>>>>TBF1      <---------At4g35610     <---- ------ZAT2         <---------AHL20(2)         <------ZmHOX2a(1)    --------->GLK1(2)       ---------   gctcgtttatcaggaaattgaattaatgggtttaagggaagacgaagaaggagaagaagaagaagacgacattctggtgacagcttgaaacagagtggat  2388500                         <---------ARR14(2)                        <------NtERF2              <------------CBF             --------->ATHB12                                                    <---------ATHB12  <-             --------->ATHB51                                                ------------>CBF  <-----            <---------AHL20(2)                                           --------->DEAR3(2)   -------            --------->ICU4                                          <---------------AtSPL8    -------            --------->AHL20(2)                                --------------->AGL15           -------    <---------AHL20(2) --------->LBD16                        <---------------AGL15           <------   --------->AHL20(2)<---------LBD16                         ----------------->AGL1           <------ --ZmHOX2a(2)-------->ATHB1                                  <-----------------AGL2           ------- >ALFIN1    <---------ATHB51                            <---------YAB1   --------->MYB46(3)   =======   caaaattttatcaaattattgaaggcggaatttggaatggagcagtaatcttgtgcttctcattccatagatggaacagaccaatgaacgatagccacgt  2388600   <---------ANAC58   <---------ANAC58   --------->ALFIN1 ------GAMYB ------HVH21            ----------->GT1                                          --------->ANAC46---- -->ANAC46    --------->ANAC46                                                 --------->ANAC55(2)<-- -->TGA1a     --------->ANAC58      <---------ANAC58                           <---------ANAC46  ---- -->bZIP60(2) ------>MYB46(1)       <---------ANAC46                           <---------ANAC55(2)<-- ---TGA1a     ------>MYB83          <---------ANAC58 <---------MYB52(1)    <---------ANAC58      ---- ---O2     --------->ANAC46<---------AHL20(2)<---------MYB52(1)            <---------ANAC58  -------- -->O2  --------->ZAT18<---------AHL20(2)  <---------ANAC46         ------>ZmHOX2a(1)       --------- ======MYC_MYB--------->ANAC58 <-----------RAV1(1)  <----------DOF2--------->TOE2(3)--------->ATHB12-   cggatgtgtgtccaccaagcagtatttagttaaatgtggcttgtttcgttaagcctttggttctaacttcctaaatttcttacgcgttattggaaaaagt  2388700                                            --------->LBD16                                       <---------ANAC58                                       <---------ANAC58                                      --------->ARR14(2)                                    <------NtERF2                                    --------->LBD16 --------->ETT(2)                  --------->RAP2.6(2) ----->MYB111(2)              ------>ZmHOX2a(2) ----MYB83                  <---------ARR14(2)                        <-----------GT1 ----->MYB46(2)             <---------AGP1 <---------ANAC46      <---------RVE1(1) ----MYB46(1)               --------->ARR14(2)                  --------->ARR11(3) ----->MYB111(1)            <-----------ARR10                   <---------GLK1(2) ->DAG2 <-----------HVH21   --------->ARR11(3)        <---------TOE1(2) ->DOF2<---------CCA1(2)  ----------->ARR10<---------RAP2.6(2)  <---------ARR11(3)             <----- -------->ALFIN1         --------->ALFIN1 <---------LBD16 <---------YAB1                  --------->AHL20(2)   aggtggaccgtatcacatgggaacagagtggatctggccggacttgcggctattcgaatgtttatagatttttttctgtcttaaatgcctcataaaatac  2388800                                                        <-----------GT1                                                        <---------WRKY18(1)                                       <---------ARR11(3)                                       --------->AHL20(1)                                    <-------  --------->ANAC46                     <---------AHL20(1)                                    <-------  --------->ANAC58                 --------->YAB1    <---------ICU4                          <-------  --------->ANAC58  ------->GAMYB------>MYB46(1)   <---------YAB1 <------------CBF     >>>>>>>>>SARD1 --TEIL--------->ICU4            ------>MYB83      <---------TOE2(3)                   >>>>>>>>>CBP60g   atagaagcaatgttttcttcaacccaaactaaaccaaacaaaatatttggattaatattgaccggttcgattgaacggtccagttagaaatttgggcttg  2388900      ------->TEIL      <-----------GT1                                                                          <-----   <---------ANAC55(2)                                                          <---------ATHB12   --------->ANAC55(2)   ---------->DOF2                  *TSS          --------->LBD16        ------ --ANAC58             <-----------TBP                <-----------GT1  <---------LBD16          <----- --ANAC58     <----------DOF2                   <---------ANAC58  <---------DAG2--------->MYB46(3) --ANAC46   <---------YAB1                      <---------ANAC58  <----------DOF2             -------   taagtatgtaacttatctttgggcttataaagaagcccatctccaaattagcgtttcaccctcactcacttttccggtttcaaccattagcacaaaaaat  2389000  Previous    Next  AGI:  At3g07470.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17046.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74376.1); contains InterPro domain Protein of unknown function DUF538 (InterPro:IPR007493) Range:  from: 2386903    to: 2388477    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07480.1    Description:  electron carrier/ iron-sulfur cluster binding. similar to unknown [Populus trichocarpa] (GB:ABK94264.1); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) Range:  from: 2388958    to: 2389817    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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