Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <-----------RAV1(1)                                                                       ------>MYB46(1)                                                                       ------>MYB83                                                                     <---------MYB111(1)                                                                     <---------MYB46(2)                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                    --------->ANAC46                                                                   ------->TEIL                                        <-------TEIL             --------->ZAT14                                    <---------ARR11(3)           <---------ZAT18       --------->DEAR3(1)           <---------AHL20(1)         --------->LBD16    --------->AtMYB61               --------->AHL20(1)        <---------ANAC46    --------->DEAR3(1)    --------->RVE1(1)                   <---------ANAC58      <---------SPL7    <---------ALFIN1     --------->ARR11(3)                   <---------ANAC58     <---------ANAC46   --------->MYB46(3)    --------->GLK1(2)               --------->ARR11(3)       <------NtERF2  ----   <---------MYB55(2)    <---------ARR11(3)     --------->ATHB12 <---------ZAT14 <-----------HVH21  - -------->MYB46(3) ----------->GT1  --------->ARR11(3)   <---------ARR11(3)      <---------RAP2.6(3)<   ttaccaccaccgctcagtacatcgaaaaatctcttgaaaatattcattttcgattggattatctccgtgcacctaatgttggccgtcgtatgagcttgat  2376400                       <------NtERF2                       --------->ATERF1(1)                                                    -------                      ------>NtERF2                                                          <-------                      <---------ATERF1(1)                                                   ------>MYB46(1)                      <---------RAP2.3(1)                                                   ------>MYB83                      --------->RAP2.6(2)                                                  --------->WOX13(1)            <------NtERF2                                                                 --------->AtMYB61           ------>NtERF2                                                               --------->AtMYB61          <---------DEAR3(1)        --------->At4g35610                                ------->GAMYB        --------->MYB52(1)          <---------At4g35610                               <---------MYB111(2)       ----------->HVH21   --------->MYB46(3)                                         <---------MYB55(2)     --------->ANAC46<---------ATERF1(2)        <------ZmHOX2a(1)                     --------->MYB46(3)   <---------ALFIN1  --------->ATERF1(2)       ----------->GT1                       ------>MYB83   --------->AtMYB61 <---------RAP2.6(2)     <------ZmHOX2a(1)                       ------>MYB46(1)  --------->MYB46(3) <---------DEAR3(1)    --------->ALFIN1    --------->MYB46(3)    -------->P ------>NtERF2      --------->ATERF1(1)   <------ZmHOX2a(1)  <-----------GT1        ------>MYB83 -->ZmHOX2a(2)      --------->RAP2.6(3) --------->ALFIN1  --------->TOE2(3)         ------>MYB46(1) -------->ANAC46    <---------ABI4(1)  <------ZmHOX2a(1)<-----------GT1          --------->ANAC46 ---------ALFIN1   --------->ALFIN1 <------NtERF2   --------->GLK1(2)  <---------At4g35610--------->MYB46(3)   ccccaccactcgacggcgaaggggcggcaactacaggcagaggaggaggaggagaatttttcttaaccgctctagcagacttaacccaaccaccaatcac  2376500                              <---------DEAR3(2)                           <-----------HVH21                          --------->DEAR3(1)                         <------NtERF2                        <------NtERF2                        ------>NtERF2                        <---------At4g35610                        --------->LBD16                        --------->At4g35610                       --------->DEAR3(1)                       <---------ANAC46                      --------->ATERF1(1)                      <------NtERF2                     ------>NtERF2                     <---------RAP2.3(1)                     <---------ATERF1(1)                     <---------RRTF1(1)                    --------->ANAC46                    <---------DEAR3(1)                  ------>ZmHOX2a(1)                  ==========================HOX2a_HOX2a                 --------->TOE2(2)               <---------ATHB12              --------->ARR14(2)       --------->WOX13(1)  <----------DOF2--------->TOE1(2)    ---------->DOF2  <---------DAG2----------->RAV1(2)  <---------ATHB12 -->YAB1      <---------ARR14(2)     <------ZmHOX2a(2)         <---------MYB52(1) --ATHB12--------->ANAC46--------->ATERF1(1)     <----------DOF2         <----------DOF2     <-------   aacccttttcccagccaatcctgcgccgcggtcgctccgatcaagcagagtctttaactcgacccgtttcgaatactttgacaacgttatgggtttcgga  2376600             <---------ZAT18          <---------ANAC58                  --------------->AGL15      --------->ICU4                        <---------------AGL15      <---------YAB1                       <-----------------AG    <---------ICU4                         ----------------->AG   <---------YAB1                          ----------------->AGL1   <------ZmHOX2a(2)                       <-----------------AGL1                     <---------TOE2(3)   --------->ICU4<----------DOF2           ----------------->AGL3                <------MYB46(1)  <---------ARR11(3)                       <-----------------AGL2                <------MYB83  ------  --------->ARR11(3) <---------YAB1        ----------------->AGL2               <---------AtMYB61---- --ANAC46 <---------ANAC58               --------->GLK1(2)              ---------->DOF2 <------ZmHOX2a(1)   gagagatcattatcgtgctctttctgatgggtttttccatgagattccattttgggtattttagagtaatccgataaatcggaaggttgaggaagaagag  2376700                                                                                            <--------                                                                                       <---------ICU4                         <---------ZAT14                                               --------->ATHB12                  --------->CCA1(2)                                                   --------->ICU4                 --------->ARR14(2)                                                   <---------YAB1                 <---------ARR14(2)               *TSS                             --------->ICU4                 <---------ARR11(3)  <---------ANAC46                            --------->YAB1     <                 --------->ARR11(3)  <---------ANAC58                            <---------ICU4    --                <---------HSFB2a(1)  <---------ANAC58                        <---------AHL20(2)    <-    --------->GLK1(2)    --------->ZAT14     ----------->GT1               ----------->TBP  <-------- --->ALFIN1    ----------->ARR10  <---------ARR14(2)   ---------->DOF2   ----------->TBP    <-------- ----->ALFIN1<------ZmHOX2a(1)    --------->ARR14(2) --------->YAB1    --------->AHL20(2)   <--------   tgggagaaactgagaggaagatttgagtttagtgaggttccttgagttggataaatcaaaagagaagaagagattatatataaacatgatgattacttga  2376800                                                                            --------->ANAC58  <------------CBF                                                          --------->ANAC58 -ANAC46                                                            <---------ANAC58 ---------YAB1                              --------->ANAC58        <---------ANAC46 ------->ARR11(3)                 <---------MYB46(3)                <---------ANAC58            <---- --------ARR11(3)               <------------CBF                   <---------LBD16            ------- -ANAC55(2)                    <<<<<<<<<RAP2.2      <------ZmHOX2a(1)--------->LBD16   --------->At4g35610 -ANAC58                      <---------TOE2(3) ---------->DOF2--------->ALFIN1        <---------ZAT14 -ANAC58               <------ZmHOX2a(1)    --------->ANAC58   <-----------RAV1(1)     <---------At4g35610   agataattgaatttgagagattagaggaagtttagattgttggaacaaggaaaaggattgtttcagtgttgcggagagaagccagagagagcagagaagg  2376900                                             --------->LBD16                                            <---------ANAC46                                            <---------LBD16                                         -                                           <---------LBD16                                     ------                                       --------->KAN4(2)                                       ------                                       --------->ARR14(2)                                   ---------                  <------MYB46(1)      <---------ARR14(2)                                   <--------ATHB1                  <------MYB83        <----------TaMYB80                                    ---------                 --------->MYB59      <---------GLK1(1)                                     <--------           ---------->DOF2           --------->ARR14(2)                                    <---------ATHB51     ---------->DOF2         <---------TOE1(3)                                             <---------AHL20(2) --ZmHOX2a(1)    --------->MYB46(2)  <---------ARR14(2)                               --------->TOE2(3) ----------------->ANAC81    <---------TOE2(3)  --------->ARR14(2)                    --------->TOE1(3)   agagagagaaaggcaaagtttggtattcttcaaggtttggatattcgcgggaactgtgtctcaaacagttcatattgagggttttaaacctgaataattg  2377000                                   <---------AHL20(2)                                  <---------AHL20(2)                                               <- -------->ICU4                    --------->AHL20(2)                                               -- ----->GT1                       <---------WOX13(1)      <---------At4g35610                  <------ --->YAB1                     <---------YAB1             --------->At4g35610                <-------- >YAB1                   --------->ARR11(3)        ----------->RAV1(2)                      <-------- >ATHB51                 <---------GLK1(2)      <---------ALFIN1                           ---------- -ICU4 ------>NtERF2     <---------ARR11(3)   <-----------GT1                             <----------   taattttgaggcccaaatggcccaatagatttttgattaatttgcaattcacaccctggcgctcacatatatgtcgaaattcaactagtatttttcgttt  2377100 --------->HSFB2a(2)                                     <---------AHL20(2) --------At4g35610                                     <<<<<<<<<MYB98                   <-------GAMYB ------->At4g35610                                    ----------->GT1                  <---------MYB46(3) ---MYB52(1)                                         ----------->GT1                  <---------TOE2(3) -ANAC58                                            --------->AHL20(1)        <---------ANAC55(2) -ANAC58                   --------->MYB46(3)  --------->AHL20(2)             --------->ANAC55(2) >ID1               <---------TOE2(3)     <---------HSFB2a(2)          ----------->RAV1(1) -GT1 --------->GLK1(2)  <-----------GT1  --------->HSFB2a(2)        ------>ZmHOX2a(2)<---------YAB1   cttctgaaattctactagtatttagattaacaactgattttgttccaaaaaaaatatgttaaaatgaatgatccaacaatacatgattttggttgtattt  2377200                                                                                         <-------GAMYB                                                                                        <---------MYB46(3)                                                                                        <------MYB83                                                                                        <------MYB46(1)                                                                                        ----------->GT1                                                                                        --------->MYB52(2)                                                                                      <--------P             --------->MYB46(3)         ---------->DOF2                             --------->ATHB12           <<<<<<<<<GT-1               ------>ZmHOX2a(1)                       <---------DAG2<-------           <-----------GT1            --------->TOE2(3)                        --------->TOE2(3)       <---------AHL20(2)      <-----------GT1                   <---------AHL20(2) <---------MYB46(3)      --------->ICU4       <---------TOE2(3)                     --------->AHL20(2)<---------TOE2(3)      --------->AHL20(2)  ---------->DOF2        <-----------GT1--------->AHL20(2) <---------YAB1   -   ccaaagtatttattaaccacttattctctaaagttactatcctaaagtatataactgaatgtccaatttaaatggtctataccttatggttggttataaa  2377300  Previous    Next  AGI:  At3g07420.1    Description:  NS2 (asparaginyl-tRNA synthetase 2). Identical to Asparaginyl-tRNA synthetase, cytoplasmic 2 (SYNC2) [Arabidopsis Thaliana] (GB:Q9SW95;GB:O48594;GB:Q8GZ48;GB:Q9SRS4); similar to SYNC1 (EMBRYO DEFECTIVE 2755), ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G56680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42773.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) Range:  from: 2373983    to: 2376750    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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