Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->ANAC58    ----------->GT1 --------->ANAC58    --------->YAB1<---------ARR14(2) ------->HVH21    --------->ARR14(2) ---->At5g28300 --------->LBD16      <---------ZAT2                                               <-- ----->GT1     --------->ANAC46      <---------At4g35610                                    <-------- ->At4g35610  <---------LBD16        --------->At4g35610          <---------ARR11(3)        <-------- --At4g35610<-----------GT1          --------->ZAT2   --------->TOE2(3)<----------DOF2      ---------   taacaagggtaatttaaccggaacccaaaaacttctctcagctcatcaaaacaatacattagtttcaacatctctttctcgcatctactacattccttga  2324000       --------->YAB1    ----------->RAV1(1)                         <---------ATHB12  ------->GAMYB                               --------->WOX13(1) --------->ANAC58   --------->LBD16     --------->ANAC58                      <---------ANAC46 --------->ANAC58  --------->ANAC58     --------->ANAC58                      <------MYB46(1) --------->ANAC46  --------->ANAC46  --------->LBD16                          <------MYB83 -------WRKY38(1)  --------->ANAC58 --------->HSFB2a(2)                      --------->MYB59        < -ANAC58     ------->GAMYB          <---------HSFB2a(2)     <---------At4g35610                     < -ANAC58  --------->YAB1           <---------LBD16          --------->At4g35610            <--------- >TOE2(3) --------->MYB52(1)     <---------ARR14(2)      ---------->DOF2     <---------MYB46(3)    --   tcaacgcaacaataacagcatgcgcaactcgatacaatccggaagaaacaatcagtttcaaaagctgatttttctgagttgggtcgaaacaatacgacga  2324100          ----------->RAV1(1)          <---------ALFIN1                        ---------->DOF2       ----------->RAV1(1)       --------->PCF2                          <-------GAMYB           ----------->HVH21       --------->ARR14(2) --------->ANAC58    <---------ANAC46     ---------->DOF2 ---------ANAC58          --------->ANAC58<---------At5g28300     ----------->HVH21 ---------ANAC58   --------->DAG2<---------ARR11(3)              <-----------HVH21 -ID1  <---------ARR14(2)--------->SPL7<-----------HVH21      <---------ANAC46 ------->ATHB12   ---------->DOF2--------->ARR11(3)        ----------->HVH21       <-------TEIL   atgcttgcagacccacatgaaaaagcgaacgcaaatatcgttgtcactgcgttgaagcgaaatgacctgtgaagcgacatttggattcatgtgagagact  2324200                                                                 <---------ALFIN1                                                                <------NtERF2                                                               ------>NtERF2                                                               <---------RAP2.6(3)                                                              >>>>>>>>>AtERF-2                                                              --------->RAP2.3(3)                                                              >>>>>>>>>AtERF-1                                                              >>>>>>>>>AtERF-7                                                              --------->ANAC58                                                              --------->RAP2.3(2)                                                              >>>>>>>>>>AtTINY2                                                              --------->RAP2.6(2)                                                              --------->ANAC46                                                              --------->ANAC58                                                              >>>>>>>>>AtERF-3                                                              >>>>>>>>>AtERF-5                                                              >>>>>>>>>AtERF-4                                                              --------->RRTF1(3)                                                              --------->ATERF1(2)                                                              --------->RRTF1(2)                                                              --------->DEAR3(1)                                                              <---------ATERF1(2)                                                             --------->DEAR3(2)                                                             --------->RAP2.3(1)                                                             --------->RRTF1(1)                                                             --------->ERF1                                                             --------->ATERF1(1)                                                            --------->At4g35610                                                            <---------ATERF1(1)                                                       <---------ICU4                                                      --------->ICU4                                                    <---------bZIP60(1)       <------ZmHOX2a(1)                                                    --------->bZIP60(1)    --------->LBD16                                                    --------->REM1(1)     <---------TOE1(1)                                          ---------->DOF2   <---------At4g35610                              <---------ANAC46      --------->bZIP60(2)   <---------TOE2(1)       ---                             <---------LBD16      ----------->RAV1(1)  <---------SPL7         -------  --------->CCA1(2)         --------->ALFIN1     ----------->HVH21     <-----------HVH21      <------   agagatttaagagaactgttcttctcccaattgggggtttttagcaaagatgcgacatcatgagccgccacttcgtccgaggaagacagagaaggtcgag  2324300                                                  <---------ARR11(3)                                                  --------->ARR14(2)                                                  --------->ARR14(3)                                                  --------->ARR11(3)                                                  --------->AGP1                                    ------>NtERF2 <---------ARR14(3)                                   --------->ANAC58 ------>ZmHOX2a(2)                       <--------                                   --------->bZIP60(1)                               <---------REM1(2)                                   --------->ANAC58<------ZmHOX2a(2)             --------->At4g35610                                   <---------bZIP60(1)   --------->HSFB2a(2)    ----------->RAV1(1)                                  --------->RAP2.6(3)<----------DOF2          <---------At4g35610  <- --------->CCA1(2)              ----------->HVH21 <---------ARR14(2)   --------->ANAC55(2)  --------- -------->ARR10               <---------ICU4    ----------->ARR10      <---------ANAC55(2)--------->ZAT14 -->HSFB2a(2)          ----------->GT1   ---------->DOF2 <---------HSFB2a(2)  --------->At4g35610 <-- ---HSFB2a(2)          <----------ID1   <---------ALFIN1<---------ANAC46  ------->TEIL  --------->ANAC46   aagagacggagaagaaggcattagaaggaaaaacatgacgccccaaagctaagatctttcgagtacttctgatatgtatcagcagcatacacagtacaca  2324400            <------NtERF2           --------->LBD16           --------->DOF5.7(2)         <---------LBD16            --------->TOE2(3)         <------NtERF2  --------->AHL20(2)                     <----------DOF2  ---------->DOF2       --------->YAB1                      <-----------GT1 -ZAT14  --------->ATERF1(1)        <----------DOF2   <---------TOE1(3) --------WOX13(1)  ------------>CBF --------->TOE1(3) <---------TOE2(3)       <----------DOF2<------- >ZAT14<---------ARR14(2)<---------AHL20(2)       <----------DOF2  <-----------GT1    ------------>CBF ----------CBF ----------->GT1--------->TOE2(3) <---------ANAC46  <---------CCA1(2)  <<<<<<<<<<<<<<<<   gattgaaaggagccggagagaaacaataaaaatgttaactttaactagtggggtttagggttttacttttatctctctggctattttgaacaatggtgtt  2324500                                                                                     --------->MYB46(3)                                        --------->CCA1(2)                          ------>MYB46(1)                                       --------->ARR11(3)                          ------>MYB83                                       <---------ARR14(2)                        <---------MYB46(2)                                       <---------ARR11(3)                        <---------MYB59                                     ----------->ARR10                           <---------MYB52(2)                               --------->ANAC46                <------------CBF --------->DEAR3(2)                        <---------AHL20(1)                <---------TOE2(3)    --------->SPL7           <---------ANAC58   <---------At5g28300    --------->ARR14(2)      <---------SPL7   -------   <---------At4g35610  --------->ARR11(3)           <---------ARR14(2)    --------------->AtSPL3  <- <-----------RAV1(2)    <---------ARR11(3)         --------->LBD16         <---------------AtSPL3 --- --ANAC46  <---------ANAC58   <---------LBD16    <---------LBD16         <-----------GT1    ------->TEIL <LFY--------->ALFIN1   --------->AHL20(1)       ------>ZmHOX2a(2)   <------------CBF------------>CBF   tatgcaggtgttgtcgtctgtctgaatattttcacggcgaagatatagtgatccggttatgaggtaattgaaattgaaccgtaccgaaccaatgcatcgc  2324600                                     ----------->GT1                                <---------AHL20(2)                              <---------------AGL15           --------->AtMYB61                        --------->ANAC46                  <---------ETT(2)                      --------->ANAC58                    <---------ZAT18          --------->ANAC58    ===============================================================MADS_MADS          ----------->GT1     --------------->AGL15    ------>ZmHOX2a(1)          <---------ANAC55(2) --------->TOE2(3)      <---------ANAC58                           -----          --------->ANAC58    <----------DOF2    <---------ARR11(3)          <---------------AGL15 -->DEAR3(1)          --------->ANAC58           --------->ARR11(3) <---------ZAT6              ----- --------ALFIN1       --------->ANAC46   --------->AHL20(2)<---------ALFIN1  --------------->AGL15 -------->HVH21 <------------CBF--------->AHL20(2)   <---------ANAC58----------->GT1          -------   ctcacacttatcaagtaaaattgcacccaaaactttaattagttaaaataagatgtcctgtccacctccagtggtaattctcgtattagcaaatacaaaa  2324700    ---------->DOF2   ------->GAMYB  <---------MYB55(2)                                                                              ---  --------->MYB46(3)                                                                         -------- --------->ANAC58                         --------->ANAC58                                  --------- -------->P                               ----------->GT1                             --------->ANAC58 ------>MYB46(1)                          <---------ANAC55(2)                         --------->ANAC58 ------>MYB83                    <---------ZAT14                                      --------->ANAC46 --------->ANAC58                --------->ZAT18                        --------->MYB52(1) --------->ANAC55(1) ---->ANAC58           ---------->DOF2    --------->ANAC55(2)        <---------At4g35610   --------->ANAC58 ---->ANAC58      <---------ANAC46        --------->ANAC58           --------->At4g35610   --------->ANAC58 --->DOF2      <---------MYB52(1)--------->ZAT14      --------->ANAC46  ---------->DOF2    --------->ANAC46   gccaaccaaagaaaaacgttgtgttgaaagagaagtatactatcaagtaacaatagacaccattgagactgagctaaaggaattacccaagacacggcaa  2324800           ----------->HVH21                                                      ------->TEIL         <---------ANAC58                                                         <-------TEIL ------>YAB1                            <----------DOF2                       --------------->AtSPL8 ->At5g28300 <<<<<<<GRF7       --------->ARR11(3)                          --------->ZAT18 -->GT1  <---------ANAC58      <---------ARR11(3)--------->YAB1            <---------ZAT14          <   aaataaacttggcctgacaatttcagacactaagatgtttctctttttcattcacaatccttgagcaactgtttttgtgcaatgtacatatattcttcaa  2324900  Previous    Next  AGI:  At3g07290.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65560.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83683.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22243.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2321746    to: 2324388    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07300.1    Description:  eukaryotic translation initiation factor 2B family protein / eIF-2B family protein. similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT2G44070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42909.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) Range:  from: 2324623    to: 2327620    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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