Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    ------>NtERF2                                                                   >>>>>>>>>AtERF-4                                                                 --------->ZAT2                                                                 <---------ZAT2                                                                 --------->At4g35610                                                             <---------WOX13(1)               -------                                                           <---------ICU4                    --------                                                           -------->ATHB1          <---------ICU4         <-----------ARR10                                 --------->ATHB12        --------->ATHB12    ------>MYB46(1)     --------->ANAC46                   <--------ATHB1          --------->ATHB51    ------>MYB83      --------->ANAC58                    --------->ICU4           -------->ATHB1  ------->GAMYB       --------->ANAC58                    <---------ATHB12        --------->ICU4 --------->MYB46(3)   --------->ANAC46                    <---------YAB1 --------->YAB1      <------- ----------GT1       ------->TEIL                <---------ARR11(3)>>>>>>>>>AtERF-3<--------HAHB4 ------MYB52(2)   --------->AtLEC2              <---------CCA1(2)<---------At4g35610 <---------YAB1 <   ttaaccatccgaatcaaaccatgcacccaaaactcgaattgaaatttgatatatctaacaatgattgagctgccatcagaatgaattattagaaaataat  2297500                                                                          --------->ATHB12                                                                       --------->YAB1       --------->ARR14(2)                                              <---------ICU4       <---------ARR14(2)             --------->ANAC46                <---------ATHB12            ---  <-----------GT1                 --------->YAB1                     <xxxxxxxxxxxxxxxxxsmallRNA(fl3) -->AHL20(2)                     <---------ATHB12                   --------->WOX13(1)        ------- ->AHL20(2)             <---------ZAT14                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) --AHL20(2)<-----------HVH21   --------->WOX13(1)        --------->LBD16  <---------ICU4     <------- -----------HVH21       --------->ZAT14--------->LBD16  <---------ANAC46 <---------YAB1    --------->WOX13(1)   tttgtcacggttccttcagaccagagtaaactccaatcatccgaaactcaaaacccttgcgcaaaattttcaatcatcatttggcaacttattcaatcaa  2297600                                       ------>MYB83                                       ------>MYB46(1)                                       --------->ANAC58      ------->GAMYB                    --------->ANAC58    --------->ANAC58  --------->MYB46(3)     <---------ANAC55(2)               --------->ANAC58 ------>MYB46(1)    <---------------AtSPL8                 --------->ANAC46 ------>MYB83       ----------->GT1 --------->MYB46(3)   --------->MYB52(1)                    <----- ------>MYB46(3)   --------->DAG2  -------->P        --------->ANAC58            <---------ATHB12 -->YAB1         ---------->DOF2  --------->MYB52(1) --------->ANAC58          --------->WOX13(1) --ATHB12  --------->AHL20(2)   <---------MYB52(2) ---------->DOF2   --------->AHL20(2)  <---------GLK1(2)   accaacaacgaaaataaacaaaaggttacataaaactaaccaagcctatgttctaaagcaaacgaaatcaaaaaattcaaacaatcaataagatgctcca  2297700                                         ------>NtERF2                                        --------->RRTF1(2)                                        --------->RRTF1(3)                                        <---------ATERF1(2)                                        --------->DEAR3(1)                                        --------->ATERF1(2)                                        --------->RAP2.6(2)                                        --------->DREB2C(2)                                        --------->RAP2.3(3)                                        --------->RAP2.3(2)                                        --------->ANAC46                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 --------->ARR11(3)                                 --------->ARR14(2)                                 <---------ARR14(2)                                 <---------ARR11(3)                                 <---------AGP1                                 <-----------ARR10                                 --------->AGP1 <---------YAB1     --------->LBD16       --------->ZAT18<------NtERF2    <---------ANAC58     <---------At4g35610    ------------>CBF    <---------ANAC46     --------->At4g35610   --------->TOE2(3)    <---------LBD16   ---------->DOF2  --------->RAP2.3(1)                                   <-------    <---------ANAC58<----------DOF2*TSS--------->ERF1                                  <---------TOE1(3)   <---------LBD16 --------->TOE2(3)  <---------ATERF1(1)            --------->AHL20(2)<---------TOE2(3) ----ALFIN1--------->CCA1(2)    <---------CCA1(2)             <---------At4g35610   --------->ICU4   ctatttgcgggagagatggaacctttaagctcacagatctcgccgccattctcaatgtttcttcggctgttttaaatagttgtgtcattagggtttttat  2297800                        --------->TOE2(3)                       --------->YAB1                                                       *TSS    <                  <---------KAN4(2)                        --------->At4g35610        <---------ANAC58           <---------ICU4                                 --------->ANAC58            <---------ANAC58           --------->ATHB12                               --------->ANAC58      <---------ARR14(2)  -           --------->YAB1------------>CBF           ------>ZmHOX2a(1)           --------->ARR14(2)  < --YAB1  --------->ARR11(3)     <-----------GT1    <---------LBD16              --------->ARR11(3)  -   tcaggtcttaaaatcatgggtataatcgtcaatttcacaaaataagcctttgtcctggataagctaaaccagtttccaaacaaatcttgcttcgattcac  2297900                                                                                            <------NtERF2                                                                                            ---------                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                         <---------LBD16                 --------->TOE2(3)  --------->ARR14(2)                                   <------NtERF2                 ----------------->AGL3                                                <---------DEAR3(1)                 <-----------------AGL2                                              <------MYB46(1)                 ----------------->AGL2                                              <------MYB83       --------->ATHB12             <---------ARR14(2)                               <---------MYB46(3)      <---------YAB1              --------->LBD16                                    --------->MYB52(2)    <-----------GT1             <---------LBD16                                     --------->MYB55(2) -------->ATHB1  <-----------------AGL1                                          <-----------RAV1(1) --------->ATHB51----------------->AGL1                           --------->ANAC58  <---------AtMYB61 <---------ICU4  ----------------->AG                             --------->ANAC46 <---------MYB52(1) ---------ATHB51 <-----------------AG           <------ZmHOX2a(2)<---------At5g28300<---------MYB46(3) -------->AHL20(2)--------------->AGL15   <----------DOF2        <---------LBD16 --------->MYB55(2) ---------AHL20(2)<---------------AGL15 ===============HOX2a_HOX2a--------->ANAC58<-------GAMYB -------->ICU4   <-----------------AGL3 ------>ZmHOX2a(1)       <-----------GT1  <---------MYB46(3)<-   aaattattacgattgcaatccctaatttggaagtcccggttcctctttcgatcaaatcggagaatttcacggcatggctacggctgttggtggcggaagc  2298000            <---------GLK1(1)           <---------ARR14(2)                                                                     ---         <------MYB83                                                                             <--         <------MYB46(1)                                                       --------->GLK1(1)  ---         ----------->ARR10                                                   <------NtERF2    <------NtERF2       <--------P                      --------->HSFB2a(2)                  --------->LBD16   -------      <-------GAMYB                --------->GLK1(1)                        <------NtERF2    ------>NtERF2     <---------MYB46(3)           --------->ARR14(2)                        <---------RAP2.6(3)------     --------->MYB55(2)           <---------ARR14(2)                       --------->RAP2.6(2)-------    <---------AtMYB61            <------ZmHOX2a(1)                        <---------LBD16--------->ANAC58 --------->ALFIN1   --------->HSFC1(2) <---------HSFB2a(2)               ------>NtERF2   --------->ANAC58 >ATERF1(1)--------->ARR14(2)--------->ALFIN1                      <---------YAB1      ---------->DOF2 --------ANAC46     <---------HSFC1(2)<---------ANAC46           --------->YAB1<---------GLK1(1)  <--   gatgtggaggttggatttgcgaagcttcaaggtgaggatttcgagtactatatgcagtcttactccattatactcggccggaattctaagaaagccaccg  2298100                                                          ------>ZmHOX2a(2)                                                        --------->ARR14(2)                                                        --------->ARR11(3)                                   --------->ARR11(3)   <---------ARR14(2)                                 ------->TEIL           <---------ARR11(3)                       <---------MYB46(3)               <-----------ARR10                       --------->MYB55(2)        --------->ANAC58    --------->ZAT18        ------>ZmHOX2a(2)--------->ALFIN1        --------->ANAC58    --------->ZAT14      <---------ARR11(3)<------NtERF2          <---------ALFIN1      <---------ZAT14      --------->ARR11(3)<-------GAMYB          ------->GAMYB       <---------bZIP60(1) ------>ETT(2)         <---------DEAR3(2)     --------->MYB46(3)   --------->bZIP60(1) -------ETT(2)         <---------DEAR4(2)    -------->P <---------ARR11(1) ------>DEAR3(1)      <---------DEAR3(1) --------->ANAC58--------->HSFB2a(1)                      <-- -->DEAR3(2)          <---------DREB2C(2)--------->ANAC46--------->GLK1(1)       <---------HSFC1(2) --->DEAR3(1)        <------NtERF2 <---------ARR11(3)  <---------CCA1(2)         --------->HSFB2a(1) -->MYB46(3)         <---------ABI4(1)   --------->ANAC58<------ZmHOX2a(2)       --------->HSFC1(2)-- -------DEAR3(1)   <---------DEAR3(1)   <---------LBD16<---------ARR14(1)    --------->ANAC46     <--   tcgacgttgatctctcatccctcggcggtgggatgaacatctcgcgcaaccacgctcggatcttctatgacttcactagacgacgcttctctctcgaggt  2298200                                                    --------->MYB52(1)                                                   ------>ZmHOX2a(1)                                                 --------->YAB1                                               --------->ARR14(2)                      ==============                                               <---------ARR14(2)                      ------>ZmHOX2a(2)                                               --------->GLK1(2)                      ===============                                              --------->GLK1(1)                       <------ZmHOX2a(2)                                              <---------GLK1(1)     <-----------GT1  --------->ARR14(2)                                           --------->LBD16 --------->ANAC58          <---------ARR14(2)       <---------ICU4                     --------->LBD16  --------->ANAC58  <----------DOF2 -------ANAC58                           <---------LBD16 ---------->DOF2    <---------DAG2 ---->ZmHOX2a(1)                    --------->At4g35610--------->TOE2(3)  --------->ARR11(3) -------ANAC58------>NtERF2         <---------At4g35610<-----------TGA1   <---------ARR11(3)  -------   ccttggcaaaaatggctgcctcgttgaaggtgttcttcatctccctgggaatcctaacgtcaagctcgattcacaagaccttttgcagatcggagacaaa  2298300                                                                                                  <--                                                           --------->ANAC46                     -----                                                           --------->bZIP60(2)                 ------                                                           --------->O2                        <-----                   --------->ARR14(2)     <---------MYB52(1)                                 --------                   <---------ARR14(2)    ============================MYC_MYB                 <-------              ------>MYB46(1)            <-------GAMYB     <---------O2                      --------              -------->P                 <---------SPL7    <---------TGA1a                  ---------              ------>MYB83              <---------MYB46(3) --------->ANAC58                 <--------              --------->MYB52(1)     ------>NtERF2         --------->TGA1a                --------->TOE2(3)      <----------DOF2      --------->GLK1(2)               --------->ANAC58  <-----------RAV1(1)<---- ===================HOX2a_HOX2a      <------NtERF2       <---------ALFIN1    --------->ALFIN1<------- ===================HOX2a_HOX2a    <---------ANAC58     <------NtERF2  --------->ANAC58   ----------- --->DOF2    ------>ZmHOX2a(1)     <---------ANAC58   --------->PCF2   --------->ANAC58   --------->YAB1   gagttctactttctcctaccggttcggagcatcttaggcgggccgttgggacctaggcaccacgtctctgggcaaacaagtgttgttccataccataatt  2298400  Previous    Next  AGI:  At3g07215.1    Description:  other RNA Range:  from: 2296170    to: 2297735    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07220.1    Description:  transcriptional activator, putative. similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17274.1); contains InterPro domain Forkhead-associated (InterPro:IPR000253); contains InterPro domain SMAD/FHA (InterPro:IPR008984) Range:  from: 2297892    to: 2299578    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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