Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                <----                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                        <----------ID1                                               ------->TEIL<---                        ----------->GT1  <---------ALFIN1                            --------->ARR14(2)                       ----------->GT1--------->ARR14(2)                  <-----------GT1   <--------              ----------->HVH21     --------->ANAC58           <---------ZAT14       <---------ARR14(2)             <-----------HVH21      --------->ANAC58 <----------DOF2  <---------WOX13(1)    ---------             --------->At5g28300--------->YAB1   <---------ZAT18--------->MYB52(1)  <---------CCA1(2)   ttctcggttttgaacggtgacagagagggaaaaatcacaagaaccacattgtgaactttgatgagttaactgatttataccatcttgtatctgagatcgt  2285100                         --------->DEAR3(1)                         --------->TOE1(2)            <-----------HVH21         <------ZmHOX2a(2)        --------->ARR14(2)        <---------ARR14(2)      --------->LBD16    --------->TOE2(2)                          <---------WRKY38(1)    <---------LBD16     --------->DEAR3(2)                         --------->ATERF1(1) ------TOE1(2)          --------->MYB46(3)                  ---------->DOF2                         < -----MYB52(1)--------->ETT(2)                           --------->ANAC58                           < ------TOE2(2)<---------ETT(2)       <---------ANAC58    --------->ANAC58                           < -ARR11(3)  --------->LBD16          <---------ANAC46    --------->ANAC46                   --------- >ARR11(3)------>ZmHOX2a(2)          <---------ANAC58 --------->ARR14(2)          ------>ZmHOX2a(2) <   aagttatccggatccgtcgatcgaaaaccgacgaaaacagcgtggaaattgcaagggaaacgcaaaggggtcgactcaagttgatcggagagagaatcga  2285200              ------->GAMYB             <---------ANAC46                                             --------->LBD16           <---------DOF5.7(2)                                          <---------LBD16           --------->MYB52(1)                                        <---------ARR14(2)         --------->DOF5.7(2)                            --------->At4g35610    <---------SPL7                       ===========================RAV ----------------->AGL1 ---------ANAC58                         ----------->RAV1(1)    --------->TOE1(2)    --------->DAG2 ---------ANAC58        <---------ARR11(3)              ----------->RAV1(2)     <----------ID1 ---------bZIP60(2)     --------->AHL20(1) --------->ANAC46     --------->TOE2(2)   ---------->DOF2 >GLK1(2)--------->At5g28300    <---------At4g35610   <---------ALFIN1 --------->MYB52(1)---------->DOF2 ---------ANAC46        <---------AHL20(1)--------->LBD16 ----------->HVH21 ---------->DOF2   tgtcgtggaacggtaacggagagcgatatatttccactgacttccacagaaatggcacacctgaaacctccgataccggaaagggataaagcaaaggaag  2285300                    --------->ANAC58               <---------ZAT2               --------->At4g35610               --------->GLK1(1)               <---------At4g35610               --------->ZAT2        <---------ARR14(2)                                               --------->ZAT2        --------->ARR14(2)                         ---------->DOF2       <---------ZAT2       --------->HSFB2a(1)                      <---------MYB59          <---------At4g35610        -       <---------HSFC1(2)                       --------->TOE2(3)   <---------ZAT14                <-       --------->HSFC1(2)                      <---------ANAC55(2)  --------->ZAT14      --------->ANAC58       <---------HSFB2a(1)                 --------->YAB1       <---------------AtSPL8   --------->ANAC58   ----------->GT1  --------->ANAC58    --------->YAB1       ---------->DOF2           --------->CCA1(2)   cgaaatcgaaaattcggagctcaaggaattaagaagaccaaagaataatacctaaaaggaatgaaaagagtacagagctggtgatgaagagacgcttcaa  2285400             --------->ANAC58             --------->ANAC58      <------MYB83      <------MYB46(1)      <---------ANAC46                           --------->LBD16     --------->MYB111(2)                        --------->LBD16     --------->GLK1(1)     <---------AtMYB61                 <---------ANAC58             <---------GLK1(1)     --------->MYB55(2)                <---------ANAC46      <------ZmHOX2a(2)           --------->LBD16     <---------MYB46(3)              ------>NtERF2 <---------ARR14(2)               <----------DOF2     --------->MYB111(1)             --------->LBD16        <---------ARR14(2)     <---------ANAC58     --------->MYB46(2)            <---------LBD16 --------->ARR14(2)              <---------ANAC58 -------->LBD16             <------ZmHOX2a(2)  <---------LBD16------>ZmHOX2a(2)   --------->ABI4(2) ----------RAV1(2)     <---------LBD16 <---------ANAC58     --------->ARR14(2)<---------DEAR3(1)   <-   tccaggtttggtggaacgcatagtcttcggatcaaactccggcgtgattcccggattcagacgatcggagatttcttccatcggtgctttccgagagttg  2285500                      --------->ZAT2                      --------->At4g35610                      <---------At4g35610                      <---------ZAT2                     ----------->GT1           <-------TEIL                              <---------TOE1(2)           --------->ZAT14                     <---------At4g35610           <---------ZAT18                 <-----------HVH21     ---------->DOF2           --------->ZAT18       <---------ANAC58   ------>ZmHOX2a(1)           <---------ZAT14       <---------ANAC46  --------->TOE1(2)                              --- --------At4g35610 *TSS          <---------ANAC58  --------->TOE2(2)     <----------DOF2<------ZmHOX2a(1)   aagatgccacaagtacacttgctcagctctctcttgcgtcgattttgtcagttcctacgatgtaaaataaagagtcttttatattaagtaggaactgatg  2285600                                                       <---------PCF2                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <---------MYB52(1)                                                    --------->ALFIN1                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxx>smallRNA(le3)                                              ----------->HVH21                                              --------->ALFIN1                                             ------->MYC2                                             <-------MYC2                                             ------->PIF5                                             ------->MYC3                                             <-------MYC4                                             <-------MYC3                                   ===================bZIP_DOF                                   <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <-------MYC2  <---------TGA1a                              <-------PIF5  <---------bZIP60(2)                              ------->PIF5  xxxxxxxxxxxxxxxx>smallRNA(s)                              ------->MYC2  --------->TGA1a                              <-------MYC3  --------->PIF3(3)                              ------->MYC3  <---------PIF3(3)    ----------->RAV1(1)                             <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)                       ---------->DOF2      --------->ANAC46    xxxxxxxxxxxxxxx>smallRNA(se3)                       ===============================bZIP_DOFxxxxxxxxxxxxxxxx>smallRNA(s)                      --------->ALFIN1      --------->O2     xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)                  --------->At4g35610       <---------O2xxxxxxxxxxxxxxxx>smallRNA(s)                  <---------At4g35610    --------->MYB46(3) --------->ARR14(2)                ---------->CDC5   <---------ANAC58<---------ANAC46        ----------->GT1             --------->At4g35610  <---------ANAC58<---------ANAC58        <---------ANAC46        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)>>>>>>>>>>AtbZIP1xxxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxx>smallRNA(s)     ---------------->PIF3(2)<---------ALFIN1        xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------GT1<---------DEAR3(2) <------NtERF2        *TSS <---------At4g35610  <---------ANAC46<---------ANAC58     <---------DEAR3(1)       <---------RAP2.6(3)   --------->ALFIN1------->MYC4 xxxxxxxxxxxxxxxx>smallRNA(s)      --------->RAP2.6(2)    <---------ANAC58<-------PIF5xxxxxxxxxxxxxxxx>smallRNA(s)     <---------TOE2(3) --------->CBF  ======================================MYC_MYB<------ZmHOX2a(2)       <----------DOF2   ttcaatagccgtcttagctcagcggtagagcgcgtggcttttaaccacgtggccgtgggttcgatccccacagacggcgtaaaaactcttttaagttttt  2285700                                                      <---------MYB46(3)                                                     <---------TOE1(2)               <----------DOF2                     <---------ANAC58               --------------->AGL15               <---------ANAC58          <---------MYB46(3)            ---------->DOF2      ----------->HVH21              <-----------GT1 <---------TOE2(2)       ----------->GT1    ------>ZmHOX2a(1)       --------->YAB1 --------->HSFC1(2)             ---------->DOF2      <-----    <---------At4g35610<---------At4g35610 <---------HSFC1(2)       ------->TEIL<-------TEIL   <-----   tgggtcctctgatggttctttatacagctatggtcatattaacaaagcttcttccttggttactactatgtactctgaaaggttcattgtttagatggct  2285800                               <---------AHL20(2)                               <---------AHL20(1)                              --------->YAB1                             <---------YAB1                            <---------AHL20(2)                            --------->AHL20(2)                            --------->AHL20(1)                           --------->YAB1                   <---------ANAC58                   <---------ANAC55(2)                   --------->ANAC46                   --------->ANAC58                   <---------ANAC58                   --------->ANAC58                                  ----------->GT1                <                   --------->ANAC55(2)                           ---------->DOF2                   <-                   --------->ANAC55(1)                     <------ZmHOX2a(1)                     <---         ----------->GT1  <---------YAB1                  <------MYB46(1)                        <---     <---------TOE2(3)   --------->TOE2(3)                <------MYB83--------->ZAT18        <------- ----ANAC58       <---------TOE2(3)                      --------->MYB59                     -------- ----ANAC58      <-----------GT1                        <--------P  --------->ZAT18<---------------AtSPL8   tcttactgatgttgttaatttacgtaacattataatatttggaagacagcatcaatgggtaggaaccaagagcgcaaaaaaaaaacgagtacaagaattc  2285900         <---------MYB111(1) <---------ANAC58 <---------ANAC58 <-------GAMYB                                                                     <---------TOE1(3) ---------MYB46(3)                                                                <-----------RAV1(2) --------TOE1(2)    --------->LBD16                                   --------->TOE2(3)             - ------ANAC58     <---------LBD16                                     --------->TOE1(3)             - ------ANAC58   <---------ARR14(2)                                    --------->YAB1                - --GLK1(1)      --------->ARR14(2)                                 <---------GLK1(2)      <---------ANAC58 ->GLK1(1) -------->P          --------->ANAC46      ---------->DOF2--------->GLK1(2)     <---------ANAC58   cttggttgccacttaccatttccgcattcgttcacaaaacactctaaaactctatcaaagagctcttaagaatcttaaatcacttcaggttttcttggtt  2286000  Previous    Next  AGI:  At3g07180.1    Description:  GPI transamidase component PIG-S-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO65765.1); contains domain PTHR21072:SF5 (PTHR21072:SF5); contains domain PTHR21072 (PTHR21072) Range:  from: 2282239    to: 2285519    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07185.1    Description:  pre-tRNA. tRNA-Lys (anticodon: TTT) Range:  from: 2285608    to: 2285679    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g07190.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48660.1); similar to unknown [Populus trichocarpa] (GB:ABK95486.1); contains InterPro domain B-cell receptor-associated 31-like; (InterPro:IPR008417) Range:  from: 2285783    to: 2287453    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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