Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                ----------->HVH21                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <---------ETT(1)                                                                       ---------->DOF2                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              ------>ZmHOX2a(1)------>NtERF2                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          --------->ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(i)                                                          <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          --------->GLK1(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                ----------->RAV1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      ------>ZmHOX2a(2)                <xxxxxxxxxxxxxxxxsmallRNA(s)                     <------ZmHOX2a(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxx                    --------->AGP1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxx                    >>>>>>>>>GATA-3                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxx                    >>>>>>>>>GATA-2                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  <-------                    >>>>>>>>>GATA-4             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxx                    >>>>>>>>>GATA-1--------->TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <----------   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxx <-----------GT1    --------->ARR11(3)       <---------ANAC55(2) --------->REM1(2) ----------->GT1 ---------YAB1      <---------ARR11(3)       xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------ARR11(3)  --------->GLK1(1)         --------->ANAC55(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   atatcactggccttggtagagagatctatgtctccaacataaaactcacttaacatggcgattcctgtgttgagaaagctccgacaagtttaaaaccttt  2251600    <---------ETT(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR14(2)   <---------AHL20(2) <---------ARR14(2)  --------->AHL20(1) xsmallRNA(fl3)      <---------AHL20(1) xsmallRNA(si3)   --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->ANAC58 xxxxxxxxxxxxxxxxxxsmallRNA(i2)                        --------->ANAC58 xxxxxxxxxxxxxxxxxxsmallRNA(se3)                       --------->ANAC46 --DAG2       --------->AHL20(2)           ----------->GT1                                <---------MYB46(3) xxxxx>smallRNA(s)<---------AHL20(2)     <---------ANAC46                                <---------WOX13(1) -GT1         <---------AHL20(2)         <---------ANAC58                             <---------YAB1 xxxx>smallRNA(s) --------->YAB1         <---------ANAC58 ---------->DOF2           <---------At4g35610   ccatttccgaccatttttaattatatatttttccaaaattgtggtgtgtaaatttccaaggaaagagaatgtttttgtatttgtttatctgattgttgaa  2251700                                                          <---------ANAC58                 --------->DAG2                                                   --------->ANAC46                       ---------->DOF2                                                   --------->ANAC58                   --------->ANAC58                                                   --------->ANAC58               --------->ANAC58                                              --------->GLK1(2)                   --------->ANAC58                                              <---------ARR14(2)                  --------->ANAC55(2)                                              --------->ARR14(2)                  --------->ANAC46                  --------->MYB46(3)          <-----------ARR10     --------->ANAC58  --------->ANAC58                --------->TOE2(3)            <---------GLK1(2)      --------->ANAC58>>>>>>>>>NAP   --        --------->At4g35610         --------------->AtSPL8<---------ANAC58        <---------ANAC55(2)  <---------TOE2(3)     <---------MYB52(1)--------->HSFB2a(2)   <-----------HVH21 --------->ANAC55(1)   aattgagattagctctaacatcaaccgtttctatcgtatgagtaccagaatccacgcttgtcttgttgtcacacaaactcattcacgtaagtaaaagtgt  2251800                                                                    <---------AHL20(2)            <---------DAG2                                       --------->AHL20(2)            <----------DOF2                     --------->YAB1   <---------AHL20(1)     -------->P         ---------->ID1  <<<<<<<<<TBF1       <----------DOF2     <---------ARR11(3)    <-----------GT1     <----------DOF2  <<<<<<<<<TBF1  <----------DOF2             --------->AHL20(1)  <---------ATHB12 ------->YAB1      <<<<<<<<<TBF1  <-----------GT1     --------->AHL20(2) <---------AHL20(2) <--------   atcatacctttctcctttttcttcttcttcttctaatttcttttctactttcacaattaaaccccaatattttatattatttccctaatcaaccctttgg  2251900                                                                             --------->YAB1                                                                             <---------ICU4--------->AHL20(1)                                                                        ------------>CBF   <---------AHL20(1)                                                            <---------MYB59 --------->ICU4 <---------AHL20(2)                                                           <---------ANAC55(2)    --------->ANAC58                                                           --------->ANAC55(2)    --------->ANAC46                                                          <-------TEIL------->GAMYB--------->DEAR3(1)                                                <---------------AGL15--------->MYB46(3)    --------->AHL20(2)                                                ------>ZmHOX2a(1)  ------>MYB83 <-----------GT1 <---------AHL20(2)         ---------->DOF2    --------->TOE2(3)   ------>MYB46(1)--------->ANAC58 --------->AHL20(2) --------->TOE2(2)          --------->TOE1(3)   ----------->RAV1(1)    <---------ATHB12 --DOF2             --------->TOE1(2)       <---------ARR14(2)     --------->MYB52(1) ------------>CBF   catttaaaatttacatataaaacataagagaaaagatgggcctgactatcctaaactaagtacataacccaacagacaattatcacggcccaataaaatg  2252000                                                                                  <---------ZAT2                                                                                  <---------At4g35610                                                                        <---------At4g35610                                                                        --------->At4g35610                                                                       <---------RAP2.3(1)                   --------->TOE1(3)                                  <---------RAP2.3(2)            --------->LBD16                                           <---------RAP2.6(2)           --------->DEAR3(1)                 <-----------GT1         <---------RRTF1(2)          <------NtERF2                   <----------DOF2             <---------ANAC58          --------->ANAC58            <---------ZAT18             <---------ANAC58--------->ZAT2          --------->ANAC58          --------->At4g35610           <---------ANAC58--------->At4g35610       <---------ABI4(2)         --------->At4g35610  --------->LBD16 <---------ANAC58     --------->ANAC46    *TSS    <---------At4g35610 <---------LBD16 <---------LBD16  ----------->GT1   ---------->DOF2 --------->TOE2(3)<---------At4g35610--------->LBD16<---------ANAC46<---------ANAC46   gtgctaaaaggcaccgcaaaaccctaatttgaataagctgctcacttttaatcaccccggagtagtaagcttgcggctgatcagagctgagtgaaaaatg  2252100                                --------->MYB55(2)                                       --------->At4g35610                                <---------MYB46(3)                                       <---------At4g35610                            --------->ALFIN1                                           ------>ZmHOX2a(2)                           <-------PIF5                                               --------->GLK1(1)                           ------->MYC2                                               <---------GLK1(1)                           ------->MYC3                                               <------ZmHOX2a(2)                           <-------MYC3                       <---------ANAC58       --------->ARR11(3)                           <-------MYC2                       <---------ANAC46       --------->GLK1(2)                  --------->LBD16  <---------MYB46(3)    <------MYB83                <---------AGP1                 <---------ANAC46 <---------WOX13(1)     <------MYB46(1)             <-----------ARR10                 <---------ANAC58 <--------P       <-------MYC3           <---------MYB46(3)                 <---------ANAC58<-------GAMYB     ------->MYC2           <---------REM1(1)                <---------LBD16<---------AtMYB61   <-------MYC2         <-------GAMYB<---------ARR14(2)          <------ZmHOX2a(1)------->PIF5            ------->MYC3    <---------ANAC58  <---------ARR11(3)       <-----------RAV1(2)<---------ANAC58      <---------ALFIN1   <---------ANAC58  --------->ARR14(2)      <------ZmHOX2a(2)   <---------ANAC58 <-----------HVH21  <---------ANAC58      <------ZmHOX2a(1) <-----------------AGL1   <---------ANAC46--------->ANAC46<-----------HVH21     ---------->DOF2   gtgtctggatcaggaatttgcgcgaagcgcgtggtggttgatgctcgtcaccacatgctaggtcgcttggcttcggttgtagcaaaggatctgctcaatg  2252200                      <---------ANAC58                      <---------ANAC58                      <---------ANAC46                    --------->ALFIN1                  --------->At4g35610        <------NtERF2                  <---------At4g35610    ------>NtERF2                 <---------DEAR3(1)      --------->LBD16                <---------LBD16         <---------DEAR3(1)              <---------SPL7      ---------->ID1                                     <---------MYB52(1)           <-------GAMYB     --------->ARR14(2)                                     --------->LBD16          <---------MYB46(3) <---------ARR14(2)         <-----------RAV1(2)        --------->ANAC46         <---------YAB1    ----------->ARR10 ------>NtERF2<---------At4g35610--------->ARR14(2)         <---------TOE2(3)<------ZmHOX2a(1) <---------ZAT18          <-------TEIL <---------LBD16  --  <---------GLK1(2)<---------MYB52(1)  <---------LBD16<-----------HVH21      <---------ARR14(2)  ----   gccagaatattgtggttgtccggtgcgaggagatttgtctctccggcggacttgttcgtcagaagatgaagtacatgaggtttctccgtaagcgtatgaa  2252300                                                           <-----------HVH21                                                           <---------MYB52(1)                                                          <---------SPL7                                                         <---------ANAC58                                                       --------->SPL7                                           <-----------ARR10--------->SPL7                                           <---------ARR11(3)                                           <---------ARR14(3)          <---------MYB52(1)                                           --------->ARR14(2)         <-------GAMYB                                           --------->ARR11(3)     --------->ARR14(2)                                           --------->ARR14(3)   --------->LBD16                                           <---------ARR14(2)   <---------TOE1(2)                             --------->LBD16         <---------SPL7  ----------->GT1                      <-----------GT1      --------->AGP1<---------ANAC58            --------->ANAC58--------->ANAC55(2)     <---------ANAC46 --------->MYB52(2)            --------->ANAC55(2)--------->ZAT2       <---------ANAC58 <---------MYB46(3)            --------->ANAC58<---------ANAC58        <---------ANAC58<-------TEIL            --------->ANAC46<---------ANAC55(1)----------->RAV1(2)<---------ARR14(2) ------->ANAC46------->TEIL <---------ANAC58 ------>ZmHOX2a(2) <---------ANAC46               ------- ----->ZAT6<---------LBD16  <---------ANAC46<------ZmHOX2a(2) <---------LBD16    ------>ZmHOX2a(2) <-   cactaaaccttctcacggacctattcacttccgtgctccctccaagatcttctggcgtaccgttcgcgggttcgttacttcgatctctctctggttttgt  2252400                                          ----------->GT1                                          <---------ZAT6                                        --------->ZAT14                                    <---------------AtSPL8                                 ------->TEIL     <---------At4g35610      <---------YAB1                                   --------->ATHB12 ---->GT1                  <---------AHL20(2)     <---------TOE2(3)  ------->TEIL  --------->YAB1 --------YAB1            <----------DOF2<---------ZAT14 ---------->DOF2       <---------AHL20(2) <---   tatttttagctactgattcgagcaccgattttatgaatttagtactgtgaataatgtagaaagcgcatatgaactcttatttcattgaaaattgctctag  2252500  Previous    Next  AGI:  At3g07110.1    Description:  60S ribosomal protein L13A (RPL13aA). Identical to 60S ribosomal protein L13a-1 (RPL13AA) [Arabidopsis Thaliana] (GB:Q9SFU1); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.1); similar to unknown [Populus trichocarpa] (GB:ABK93590.1); contains InterPro domain Ribosomal protein L13, eukaryotic/archaeal; (InterPro:IPR005755); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822) Range:  from: 2252025    to: 2253534    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version