Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        ------>NtERF2                                                                      --------->LBD16                                                                   <------ZmHOX2a(2)                                                                   --------->ARR14(1)       <---------HSFB2a(1)                                        <---------ARR14(2)       --------->At4g35610                                        --------->ARR11(3)       <---------HSFC1(2)                                         --------->ARR14(2)  --------->ANAC46                                                --------->AGP1  --------->ANAC58                                       --------->ZAT2  --------->ANAC55(1)                                    <---------ZAT2  --------->ANAC55(2)                                   <---------ARR14(2)  --------->ANAC58   ----------->GT1                   <---------RAP2.6(3) <---------LBD16    --------->HSFB2a(2)                ------>NtERF2------>ZmHOX2a(2) ---------DOF5.7(2) <---------HSFB2a(2)               ----------->HVH21         --------->ARR14(2) ------>DOF5.7(2) ----------->RAV1(2)          <---------At5g28300<---------GLK1(2)         --------- --TEIL--------->HSFC1(2)         <---------ZAT18     --------->DEAR3(1)        <---------ARR14(2) ->ARR14(2)       --------->At4g35610      <----------DOF2      ----------->ARR10  <---------ANAC55(2) --ARR14(2)  <---------CCA1(2)    --------->ZAT14    --------->DEAR3(2)         --------->GLK1(2)   < --GLK1(2)<-------TEIL            <---------ZAT14   <---------ZAT18--------->CCA1(2)--------->LBD16 -   gttcacggaagcttcatatcatctggaaaaaaccagtgtagttctctttcacagtgccgacctggacagatccgcctctcaaaatccgtagctatctcta  2250300                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR11(3)             --------->DAG2                                         --------->ARR14(3)    <----------DOF2                                         --------->ARR14(2)   ------>ZmHOX2a(2)                                         <---------ARR14(3)  <------ZmHOX2a(2)                                         <---------ARR14(2) --------->AGP1                                         --------->ARR11(3) <---------AGP1                                     <------ZmHOX2a(1)      <---------ARR11(3)             ----------->GT1         ===============================HOX2a_HOX2a     <-----------------AGL1          =============HOX2a_HOX2a<---------RVE1(1)   <----------DOF2                   ================================HOX2a_HOX2a  ------>ZmHOX2a(2)          <---------CCA1(1)              --------->ARR11(3)             <---------At5g28300 >ZAT6--------->YAB1         <---------RVE1(1)             <---------CCA1(2) --------->ANAC58      -- ---------ARR11(3)          <---------ARR11(3)            ----------->ARR10  --------->ANAC58     --- -------->ARR11(3)          --------->ARR11(3)       <---------MYB46(3)---------->DOF2    <----------   gtgatctttcaaaattggtaacttctgtgagatatttgaggacgatcttctacgatggtttagatcttttcaaaaaagtaagcctctccgattcacagtt  2250400                                                             --------->ARR11(3)                                                          <---------WOX13(1)                                                       ----------->HVH21                                                    --------->LBD16                                                  <---------LBD16                                                 --------->MYB52(1)                                               ----------->HVH21                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)            --------->GLK1(2)          <---------ANAC55(2)               <---------ARR14(2)            --------->ARR14(2)        <    <---------AHL20(2)                      --------->ARR14(2)            <---------ARR14(2)       -- ---->ZmHOX2a(1)                            <---------ARR11(3)--------->GLK1(1)        --------->DAG2 ------>TOE2(3)                             <-----------ARR10<---------ARR11(3)       ---------->DOF2 -GT1   --------->AHL20(2)   <----------DOF2--------->ARR11(3)<---------GLK1(1)   --------->ANAC46---   ccttattcaattacttaaaaacttttcaattcttttcgagcaagacgatcttaccgggtgatagatatccagtgagaatcgtctacgaaaaagtccctct  2250500                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                      --------->CCA1(2)                     --------->ARR11(3)                     --------->GLK1(2)                     --------->ARR14(3)                     <---------ARR11(3)                     --------->AGP1                                                       <------NtERF2                     <---------ARR14(3)                                               <---------ANAC58                     <---------AGP1<---------YAB1                               --------->ATHB12    -       <---------ARR14(2)        --------->YAB1                 --------->AHL20(2)    <---------ANAC58       --------->ARR14(2)   <------ZmHOX2a(2)                   --------->YAB1 <---------YAB1      -- ---------MYB52(1)   <---------ARR14(2)         --------->At4g35610          --------->YAB1<---------ANAC46 ------->LBD16       --------->ARR14(2)         <---------At4g35610   --------->WOX13(1)--------->ALFIN1 ------>ANAC46     ----------->ARR10--------->ATHB12         --------->TOE2(3) --------->ICU4  ------   ccgtaagtgaattctcttatgaagatctggatcaataaccattgaatatcagctaaaattcaacattaatatcaatctaacatgattagggtgtcgaaga  2250600                                                                                               ------                                                                                               ------                                                                        ----------->HVH21      ------                                                                      ----------->RAV1(2)      ------                                                                      --------->At4g35610      ------                                                                    ------>ZmHOX2a(2)   <-----------GT1                                    --------->ANAC58               <------ZmHOX2a(2) <---------ARR14(2)                            <---------LBD16                       --------->ARR11(3) --------->ARR11(3)                        --------->GLK1(2)                         <---------ARR14(2) <---------GLK1(2)              --------->ARR14(2)    --------->ANAC58              <---------ARR11(3) --------->ARR14(3)              <---------ARR14(2)    --------->ANAC46              --------->ARR14(2) <---------ARR14(3)     <---------TGA1a    --------->ARR14(2)               ------>ZmHOX2a(2)           <---------ARR11(3) ---------->RAV1(2)     <---------ARR14(2)              <------ZmHOX2a(2)            --------->ARR14(2) ------->MYB52(1)   <---------HSFB2a(2)     <---------GLK1(2)<-----------HVH21     ----------->ARR10 --->ZAT6    <------ZmHOX2a(1)--------->LBD16          --------->ARR14(2)     --------->LBD16  <-----   ctacctgaagtgagaggaaactcgagaaactgcggagcacgaaactgattctacagcgatcggcttcagatcgtctgacccgaagaagattttcgatacg  2250700        --------->MYB46(3)  --------->CCA1(2)     *TSS              ---------->DOF2 --->ANAC55(1)      <---------At4g35610                                  --------->ARR11(3) --->ANAC58         --------->At4g35610           <-----------RAV1(2)    <---------ARR11(3) --->ANAC46      <---------ZAT14          <---------AHL20(2)             <-----------GT1            - --->ANAC58      --------->ZAT14       --------->AHL20(1)               <---------CCA1(2)         <-- --->ANAC55(2)   --------->ZAT18       --------->AHL20(2)       <------------MYB.PH3(1)           <-- ----ANAC55(2)  --------->ALFIN1       <---------AHL20(1)     --------->MYB52(1)          <----------   gaattggagaaccaccaagtgcagcgaaagagacgatgtgatatattatgggccaggtagtggctaacagttttatatctctccagcccatttaacagtt  2250800                              ------>ZmHOX2a(1)                              <----------DOF2                          <-----------GT1                          <---------ARR11(3)                          --------->ARR11(3)                         --------->RVE1(1)                         --------->CCA1(1)                     <---------AHL20(1)          ---------->DOF2                     --------->AHL20(2)      <---------YAB1                  --------->YAB1         <---------DAG2   ------>ZmHOX2a(1) <---------AHL20(2)  <----------DOF2                 <----------DOF2 --------->ID1   <---------AHL20(2)     --------------->AGL15         <-----------GT1 -------ANAC58  <---------AHL20(2)    ---------->ID1               <---------ICU4                 <-- -------ANAC58  --------->AHL20(2) <----------DOF2                --------->ICU4               <----- -GT1<---------ATHB12--------->AHL20(1)----------------->AGL1----------->GT1--------->YAB1   <-------   tcgtcctatcactgtttttttaataaaatatccttttcttttcctttttgataaagaataaatctgtaaatattactttcatagatttcatttctattat  2250900                                                                                               <-----                                                                                             --------                                                                                            <--------                                                                                          <---------CCA1(1)                                                                                          <---------RVE1(1)                                                                                         --------->AHL20(1)                                                                                         <---------ARR11(3)                                                                                      <---------TOE2(3)                                                                                     ---------->DOF2                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                            --------->MYB52(1)                                <---------AHL20(1)   <---------AHL20(2)<---------AHL20(2)                                       --------->AHL20(1)  --------->AHL20(2)<---------AHL20(2)                     <---------LBD16    --------->AHL20(2) -------AHL20(2)    --------->AHL20(1)               <---------YAB1           <---------AHL20(2) ----AHL20(2)       --------->AHL20(2)         <---------YAB1  <---------GLK1(2)   <---------AHL20(2) --YAB1----------->GT1  --------->ZAT6         ------>ZmHOX2a(1)         <---------ATHB12--------->ARR11(3)   tttataaaatagtaaaatgaaatttaatactaacagtttaaaactcttcctgattatgtttttcggaatttctaaatcaatttattttaaagatattata  2251000                            <---------AHL20(2)                           --------->AHL20(2)                        <---------AHL20(1)                        --------->AHL20(2)                        <--------ATHB1                        --------->ATHB51                                             <---------YAB1                        --------->YAB1               <---------WOX13(1)           --------->AHL20(2)                       <---------ATHB12    ---------->DOF2                  <-----------GT1   ---------->DOF2     --------->ICU4  --------->AHL20(2)              --------->ARR11(3)         <-- ----YAB1              <---------ATHB51<---------AHL20(2)              <---------ARR11(3)         --- ->YAB1    ----------->GT1 <---------AHL20(2)      --------->ATHB12  ----------->ARR10  <---------YAB1 -YAB1    <---------YAB1<---------ICU4--------->AHL20(2)<---------TOE2(3) <---------AHL20(2)  -------   aataagaaagttatagttataaacaataattttataagaaattaataaagaattcattgatgttttatgccaagattttatcgatttattatgctcacat  2251100                     --------->GLK1(2)               --------->HSFB2a(2)               <---------HSFB2a(2)               --------->ANAC46                    --------->ZAT6                             <------            --------->ARR14(2)                  --------->ZAT14                              --------            <---------ARR14(2)            <---------WRKY18(1)                                <------- -------ARR11(3)----------->GT1          ----------->HVH21     --------->ARR14(2)      <---------TOE1(3) ------>ARR11(3)--------->LBD16        <---------AtLEC2  <<<<<<<ZML2                   <---------TOE2(3) -->ANAC55(2) <---------LBD16<------ZmHOX2a(1)  --------->REM1(2)                   <---------MYB52(2)   gatcatgctataactatccggaaaatcagtaggagtataatgcatgactgtgaagactagaaccaattctgcatagttttgaagaaactaaggtaatgtc  2251200  Previous    Next  AGI:  At3g07100.1    Description:  protein transport protein Sec24, putative. Identical to Protein transport protein Sec24-like At3g07100 [Arabidopsis Thaliana] (GB:Q9SFU0;GB:Q56WS8;GB:Q8L7A7); similar to CEF (CLONE EIGHTY-FOUR), transporter [Arabidopsis thaliana] (TAIR:AT3G44340.1); similar to hypothetical protein OsI_014124 [Oryza sativa (indica cultivar-group)] (GB:EAY92891.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51900.1); similar to hypothetical protein OsJ_013037 [Oryza sativa (japonica cultivar-group)] (GB:EAZ29554.1); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Zinc finger, Sec23 Range:  from: 2245170    to: 2250705    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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