Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <----------DOF2          <---------At4g35610                                                                   -----       <---------At4g35610                                         --------->AHL20(2)         <------   <---------YAB1                                                  ---------->DOF2     <---------ZAT14 --------DAG2                                                 <---------ATHB12        ------>ZmHOX2a(1) ------ARR11(3)                                              ------>MYB83         --------->ARR14(2) --ZmHOX2a(1)     <-----------HVH21                          ------>MYB46(1)      <---------ARR14(2)< ->AGL15  --------->At4g35610                               --------->WOX13(1)  <------ZmHOX2a(1) ---   accttatgcttctgcttcaaggtcaccctcttactcttactctctgcaaaaaaccatcaaaccaatcaataaaaccccagtaggaatcctgaactgaatg  2232200                                           --------->ATHB12                                <---------GLK1(2)                              --------->LBD16                             --------->HSFB2a(2)                             <---------HSFB2a(2)                           <------ZmHOX2a(2)                           ===============================HOX2a_HOX2a                          --------->AGP1  <---------YAB1------->TEIL ---->YAB1<-------TEIL    <---------ARR14(2)           <---------CCA1(2) ---WOX13(1)              --------->ARR11(3)       <------ZmHOX2a(1) ---------YAB1            --------->ARR14(2)     <---------TOE2(3)          <-----------GT1 <-------- ------>CCA1(2)          --------->At4g35610 <---------WOX13(1)<----------DOF2     <----------DOF2   atatgattcaaattcattcaataagacagatccagaatatcaatatgattgaaggatgtatcttacttttactccgtttcaccatctttctcgccctggg  2232300                                                                                   <---------TOE2(3)                                                                                   <---------TOE1(3)                                                                           <------NtERF2                                                                           ----------------->AGL3                                                                           ==========================                                                                          ------>NtERF2                                      ---------->DOF2                    --------->DEAR3(1)                            <------MYB83                                --------->RAP2.3(1)                            ----------->GT1                         <---------ARR14(2)              ----------->GT1    ---------->DOF2                    --------->ARR14(2)       --------->ANAC58     <------MYB46(1)                         --------->MYB52(1) -LBD16--------->ANAC58    --------->MYB59                         *TSS<---------RAP2.3(1)  <--------   atgagagcgacgcaaacagaaaaactgagtaggttaaaagaaaagggtttatggagaaggaagatggacatatcggcgccaaattagggttttgctatta  2232400                                                                        --------->ALFIN1                                                                        <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                <--------ATHB1                                                                <---------ICU4                                                                --------->ATHB12                    <                                                                --------->ATHB51                    <                                                                -------->HAHB4                   <---                                                               <---------ATHB51                ------                                                               <---------YAB1              <---------ETT(2)                                                               --------->ICU4             <xxxxxxxxxx                               ----------->HVH21               --------->AHL20(2)         <xxxxxxxxxx                               --------->WRKY38(1)             <---------AHL20(2)         <xxxxxxxxxx          <--------HAHB4       --------->WRKY12              --------->YAB1      <xxxxxxxxxxxxxxxsmallRNA(si3)          <---------ICU4<---------MYB52(1)                 --------->AHL20(2)<xxxxxxxxxxxxxxxsmallRNA(le3)         <------ZmHOX2a(2) <---------YAB1              ----------->GT1 <xxxxxxxxxxxxxxxxsmallRNA(le3)  ------->TEIL   ----------->HVH21                 --------->ARR11(3) <---------ANAC58   <xxxxxxxxxxx =======MADS_MADS--------->ANAC46                  <---------AHL20(1) <---------ANAC58   <xxxxxxxxxxx -------AGL15   --------->MYB46(3)                 --------->AHL20(1) <---------ANAC46 <xxxxxxxxxxxxx   gatgtacttggatcattacccgacccgttatagttgacccgaatcaacttaaaaatattgaaaaaataattggggtgagagaggctcgaactctcgacct  2232500                                                 ------>MYB46(1)                                                 ------>MYB83                                               --------->DEAR3(1)                                               --------->AtMYB61                                               <---------ALFIN1                                              --------->MYB46(3)                                             <---------ATERF1(1)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                          <---------ATERF1(1)                                          ------>NtERF2                                          <---------RAP2.3(1)                                         --------->ANAC46                                         <xxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxsmallRNA(fl3)                                       ------->GAMYB                                      <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     ----------->RAV1(2)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     --------->ZAT2                                     <---------ZAT2 --------->LBD16                                     --------->At4g35610                                     <---------At4g35610                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      *TSS                      --------->ANAC58 -------->P ---------ICU4                  --------->ANAC58--------->ABI4(1) ------ZmHOX2a(1)           --------->ANAC58--------->DEAR3(1)                             <--------- --------RAV1(2)            --------->ANAC58--------->RAP2.3(3)                         ------------>CBF --->AtMYB61  <xxxxxxxxxxxxxxxxxsmallRNA(se3)------>NtERF2                   --------->ANAC55(2) xxxxxsmallRNA(si3)         --------->ANAC46<---------ALFIN1      <----------DOF2   <-----------GT1 xxxxxxxsmallRNA(se3)    ------>MYB83<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ----------->GT1 xxxxxsmallRNA(le3)      ------>MYB46(1)--------->ZAT18          <---------ICU4    --------->AHL20(2) xxxxxsmallRNA(le3)      -------->P --------->MYB52(1)          --------->ICU4 <---------AHL20(2) xxxxxsmallRNA(se3)    --------->TOE1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)         <---------ANAC55(2)   <- xxxsmallRNA(s)        --------->AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(s)   --------->ICU4  --------->TOE2(3)   caggattactcagatagctatgagacctacgcgctagccaactgcgccaccaccccgatgttagtaatctttactgattatgtaattaacttcaattgac  2232600                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                            <------NtERF2                                                                                       --------->ALFIN1                                                                                      <---------MYB52(1)                                                                                     --------->LBD16                                                                                    <---------DEAR3(1)                                                                                   <------NtERF2                                                                                   <---------LBD16                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                               <---------ATERF1(1) <-                                                                              --------->LBD16<-------                                                                              ------>NtERF2------>NtERF2                                                                             --------->DEAR3(1)------                                                                            <------NtERF2 <---------ATERF1(2)                                                                          --------->ANAC46--------->ATERF1(2)                         >>>>>>>>>WRKY18                                 <---------LBD16 --------->ATERF1(1)                      --------->TOE1(3)                                 ------>ZmHOX2a(2)<---------ANAC58                <---------ICU4            ----------->HVH21            <------ZmHOX2a(2) <---------ANAC58               <---------YAB1           <---------At4g35610           --------->ARR11(3)--------->ABI4(2)               --------->ICU4           --------->At4g35610           <---------ARR14(2)<---------At4g35610             --------->YAB1<---------ANAC46                           <---------ARR11(3)--------->At4g35610  <---------MYB52(1)  --------->TOE2(3) ----------->RAV1(2)           --------->ARR14(2)--------->ZAT2 ---CBF ---------->DOF2  <---------WRKY18(1)---------->DOF2  ---------->ID1 --------->ATERF1(1)<----- ------TEIL *TSS--------->YAB1      <-----------HVH21       <-----------GT1------>NtERF2<---------ZAT2   attcgttatccaaagtcataataaccttgacttggaccagtcacctgaaagtcttgagtttttttcccttaagatcccgccgggctccggtgctggcggt  2232700       <---------HSFB2a(2)       --------->HSFB2a(2)      ===========================================================================================MADS_MADS      ----------------->AG                                                      --------------->AGL15 ---MYB46(3)                                                                    <---------------AGL15 ---->GT1                                                                      ----------------->AGL3 --DEAR3(1)                                 ---------->DOF2                --------->HSFB2a(1) <----- ----------GT1             <---------At4g35610   --------->ZAT18           <---------HSFB2a(1)------- --ANAC46    --------->TOE2(3)       --------->ANAC58               --------->MYB52(1)        <------ --->At5g28300      <-------TEIL     --------->ANAC58--------->AtMYB61     <---------HSFC1(2)-------- --GAMYB     --------->TOE1(3)   <------ZmHOX2a(1) ----------->RAV1(1)     --------->HSFC1(2)--------   taaacccttccaaaacctgaaattcgtttagcttaggacaaacaagtgaagcccaccatacagaaatgtctaacagaagcctccatttgaagaaaatatc  2232800         --------->HSFB2a(2)         <---------HSFB2a(2) --------->LBD16  <----------DOF2       --------->GLK1(1) <---------ANAC58    <---------TOE2(2)                                                         <----- <---------ANAC58    <---------TOE1(2)                                                        ------>ZmHOX2a(2) ----YAB1<---------LBD16<---------GLK1(1)                                                    <------ZmHOX2a(2) -->ARR11(3)        <-----------RAV1(2)                                                     --------- ---ARR11(3) --------->ARR14(2)                                       <---------ALFIN1      <-------- ->CCA1(1)   <---------GLK1(2)         ------>ZmHOX2a(2)           --------->PCF2          ------->GAMYB ->RVE1(1)   <---------ARR14(2)    <---------YAB1         <----------DOF2               <-----------GT1   atggctttcttctcggattctctcaggtttccgaattttgatcgtcttcttcgattctagctttctgggttcccactgtttaagcgttcttaacgatctt  2232900                                                              --------->ANAC58                                                              --------->ANAC58      ---------->ID1                                          --------->ANAC46    <---------MYB46(3)                               <---------ICU4  <---------ANAC58                                   --------->ZAT6  <-------GAMYB                                      --------->YAB1  <---------ANAC58                                  <---------ATHB12            ===================== <---------MYB46(3)                               --------->WOX13(1)            ------>ZmHOX2a(1) -----DOF2     <---------ZAT18                  <---------ATHB12                <-----------HVH21   < >ARR11(3)     --------->ZAT18                  <------ZmHOX2a(2)               ===================== -ARR11(3)   <---------At4g35610             --------->DEAR3(1)            <---------At4g35610      -   ttttggttgtcgttttgctcactagacaatgttcacggtcgatttcgccgatcaatcactactccagccacttgtttagctccttcactcgatggagaca  2233000              --------->ARR11(3)            --------->ANAC58            --------->ANAC58         ------>ZmHOX2a(2)                                          <---------ANAC58        <------ZmHOX2a(2)                                           <---------ANAC46       <---------ARR14(2)                                         <---------AHL20(2)       --------->ARR14(2)                                      <---------ICU4  --------->TOE1(2)                       ----------->GT1   --------->TOE2(3) ==============HOX2a_HOX2a               --------->LBD16    --------->TOE1(3) ---------YAB1<---------ARR11(3)         <---------TOE1(2)  --------->YAB1 ===============HOX2a_HOX2a             <---------ANAC46 --------->YAB1   <-----------RAV1(2)<------- ------>TEIL--------->ANAC46           <---------LBD16--------->YAB1<---------ANAC58<---------AtLEC2   tgaacattggatccaagacattggtcgaacaacgtttctctcgcgggtaattcgatttataatcttaattacttggacaggtgttttcatggtctctttc  2233100  Previous    Next  AGI:  At3g07050.1    Description:  GTP-binding family protein. similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT1G52980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63821.1); similar to putative nuclear GTPase [Solanum lycopersicum] (GB:ABC26876.1); contains InterPro domain GTP-binding; (InterPro:IPR005289); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GNL3L/Grn1 putative GTPase (InterPro:IPR014813); contains InterPro domain GTP1/OBG; (InterPro:IPR006073) Range:  from: 2229596    to: 2232367    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07055.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 2232471    to: 2232506    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g07060.1    Description:  EMB1974 (EMBRYO DEFECTIVE 1974). similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46113.1); contains InterPro domain NHL repeat (InterPro:IPR001258); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 2232612    to: 2237124    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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