Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <--------ATHB1     --------->ATHB51     -------->ATHB1     --------->ATHB12     <---------ICU4     --------->YAB1    <---------ATHB51    <---------YAB1    --------->ICU4         <---------WOX13(1)              --------->ATHB51 --ZmHOX2a(2)            --------->ATHB12     --------->HSFB2a(2)                       ----------->GT1 ----ARR11(3)           <---------YAB1  <---------ANAC58   --------->YAB1               <------MYB46(1) --->ARR11(3)       <-----------GT1     <---------ANAC58  <---------ATHB12              <------MYB83 --GT1           --------->YAB1 --------->YAB1<---------HSFB2a(2)                      --------->MYB59   ctaacaattattgtctcatttataacctgattgatcaaaatttcgtttttagaaaacccaattatcgaaacccaaaaacacctcttaagtaggttatatg  2216100                           <---------ANAC58                           <---------AtLEC2                           <---------ANAC58                           <---------ANAC46                       <---------ANAC58                       <-------GAMYB                       <---------ANAC58                      <------MYB83                      <---------MYB46(3)                      <------MYB46(1)                     --------->ANAC46                   <---------ANAC58                    --------->ZAT14                   <---------ANAC58                    <---------ZAT14                   <---------ANAC46       --------->TOE2(3)   --------->At4g35610          <---------At4g35610            ----------->GT1<---------ALFIN1--------->TOE1(2)          --------->At4g35610            <---------ANAC55(2)  <---------At4g35610------->TEIL    >>>>   atgaactatttaagctcaatggcttggttgcatgaactagaaaacgtaaaattaagctacactgagcttaaaaacctgcaatggatgtctaatgtctaaa  2216200                     <---------YAB1                   --------->YAB1          ---------->DOF2                --------->YAB1             <---------DOF5.7(2)               --------->ICU4         <-------TEIL           <---------TOE2(3)   ----------->RAV1(2)                                ---------->DOF2          --------->YAB1  <---------MYB46(3)                           ---------->DOF2          --------->MYB52(1)   <---------ANAC46              <---------MYB46(3)--------->ANAC58 >>>>>>>>>>>>>LFY <---------YAB1<---------LBD16            <---------At4g35610 --------->ANAC58    --   accaatgtacaataacgatgatgataagtggttacctggatgcattaacgccgataaatagagctgttagaagtaatgcagaagcaaagagaataagttt  2216300                                                                                            ---------                                                                         <-----------GT1   ----------                                   --------->ZAT14                   <----------DOF2 ---------->DOF2                                   <---------ZAT14              <------NtERF2     <---------TOE2(3)                           <---------ANAC58          <---------------AGL15<---------HSFB2a(2)           <---------YAB1  <---------ANAC58          --------------->AGL15--------->HSFB2a(2) --------->HVH21         --------->ARR11(3)       --------->ZAT6<---------At4g35610 <------ZmHOX2a(1)   tgtgacagccattgttatggctgtatagttcttgctctgttctgtttagttatctctatatgaggcagaggcttttctcgatataaggaaagaaaaagga  2216400                                                                                            <--------   ---------->TaMYB80                                                              --------->TOE2(3) <------ZmHOX2a(1)                         ----------->GT1         ----------->HVH21     *TSS >DAG2                          <---------ANAC46                 <---------ANAC58<---------ARR11(3) >DOF2                         <---------LBD16                   <---------ANAC58--------->ARR11(3)   agaggaatatgagaagaagagtagaagaaaggctacgggagagagaagttaatataagaagaagattgtgtgaccattcccattatcttattggcctaat  2216500                         --------->YAB1             --------->ARR11(3)                  ---------->DOF2                   --------->AHL20(1)                 <---------AHL20(2)                 <---------ARR11(3)               ----------->TBP                 --------->AHL20(2)              <---------AHL20(1)       <---------TOE2(3)              --------->AHL20(1)      ---------->DOF2                            <---------YAB1             --------->AHL20(2)      <---------AHL20(2)            --------->KAN4(2)------->TEIL <---         --------->AHL20(2)        <-----------TBP --------->AHL20(2)        <-----------HVH21 ------         <---------AHL20(2)      <---------------AGL15  ------------>CBF--------->LBD16       <------ -MYB59  --------->AHL20(1)      --------------->AGL15 <-----------GT1<---------LBD16   <---------TOE2(3)   ttcatagaaaataaaatatataaagaataagaaaactatttaaagtatataaaatatatacaatttgtttattccgcagggtcatgaatctaggttgtga  2216600                                                                        <---------ARR11(3)                                                                        --------->ARR11(3)        <--                                                  --------->LBD16--------->YAB1                   ---   --------->GLK1(2)                   --------->YAB1         --------->WOX13(1) ----------->GT1 <--- ------WOX13(1)                   <----------DOF2--------->LBD16 <---------AHL20(2)              ---- --->ATHB12                       <---------DAG2<---------LBD16  --------->AHL20(2)      <-----------GT1 ---YAB1                --------->ZAT6<---------YAB1   <---------AHL20(2)--------->CCA1(2)    <------   ttgctaatctggacgatgaagaaatatcactatgtgctttatcatatattccctgaatttatagcaattatatagatatatagttgtgaaattacagaat  2216700          <---------TOE2(3)      --------->TOE2(3)    <---------TOE2(3)    <---------TOE1(3)   --------->MYB52(1)             <-----------GT1   <---------DOF5.7(2)         <---------MYB52(1)   <-----------GT1        <---------ARR14(2)                         <-------GAMYB -------AHL20(2)          --------->ARR14(2)                        ----------->GT1 ------>AHL20(2)         <---------CCA1(2)                   <----------DOF2           <---------AHL20(2) ------AHL20(2)          <---------GLK1(1)                --------->ARR11(3)          <---------AHL20(1) ----->AHL20(2)     <-----------GT1---------->ID1         <---------ARR11(3)          --------->AHL20(1) ---GLK1(2)       <---------AHL20(2) <----------DOF2  --------->LBD16--------->At5g28300 <---------AHL20(2)   ttaattaacgtttatgttatttattccatatccgtttttctttttcatttttcatccgaagacctttatacggttatacctatacatatatatttttgaa  2216800                                                                                                    -                                                                                                    <                                                                                                    <                                                                                <---------AHL20(2)  -                                                                       ----------->HVH21       <-----                                                                       --------->At1g77200     <-----                                                                       ------->GAMYB           ------                                                                       --------->DREB2C(2)     <-----                                                                      --------->SPL7           <-----                                                                      --------->DEAR3(2)      -------                                        --------->YAB1                --------->MYB46(3)      -------          <------MYB83                 <---------YAB1              ----------->HVH21          -------          <------MYB46(1) <---------AHL20(2)                     --------->ANAC46      --------->ANAC46         --------->MYB59 <---------AHL20(2)                    <-----------GT1 --------->AHL20(2)  <-    ---------->DOF2      --------->AHL20(2)             --------->AtLEC2----------->RAV1(1)  <------- --------->YAB1   <------ZmHOX2a(1)<-------GAMYB   <----------DOF2 --------->ANAC46   <---------LBD16   caataagaaagtaggttacaggaactattaatttgactgttgtcataagtcatctttcatgcattatacccgaccgacagatttaatctacggagttagg  2216900    <---------------------WRI1 -------->ARR11(3) ---------ARR11(3) ---------ARR14(2) -------->ARR14(2) -MYB46(1) ----ANAC46 ----->GT1 -MYB83   <---------------AGL15 ----ANAC55(2)                                  --------->At4g35610 -->MYB59--------->MYB46(3)                  <---------At4g35610     ------->TEIL     <----------DOF2 -->MYB111(1)                                --------->At4g35610 --------------->AtSPL8 -->MYB46(2)                          --------->AHL20(2)         <---------------AtSPL8 --------CCA1(2)                 --------->ANAC58                <---------------AtSPL3  ---------->DOF2 --MYB55(1)                      --------->ANAC58        ----------->GT1     --------->MYB46(3)   tatatctccgaaccattctaagaaatattgttcttacgaaaaaaataagctgctaaaacttgttatatatgtacttctaaccaataagctttcaagccga  2217000  Previous    Next  AGI:  At3g07010.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 8 precursor [Arabidopsis Thaliana] (GB:Q9M8Z8;GB:Q8LF66); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71567.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63802.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75298.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contain Range:  from: 2212734    to: 2216489    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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