Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-----------GT1                ------->GAMYB    <---------AHL20(2)          ------>NtERF2                                                --------    --------->AHL20(2)       ------->GAMYB                                                   <-------    <---------AHL20(1)      --------->MYB46(3)               ------->TEIL              ----------->GT1    --------->AHL20(1)    <---------DOF5.7(2)               <-----------GT1 <-----------GT1 --------- ----->AGL15             <---------WRKY45                <---------------AtSPL3    <---------WRKY12 ------AGL15             <---------WRKY38(1)             --------------->AtSPL8    <---------WRKY38(1) -------AGL3             <---------WRKY12                --------------->AtSPL3   <---------ATHB12 -------AGL1            --------->WRKY18(1)   ---------->DOF2<---------TOE1(2)    --------->WRKY18(1) ---->AGL15      --------->AHL20(2)  --------->MYB52(1)  <---------------AtSPL8  <-----------HVH21   tggcaataaaataactaaattatacagtcaacgacgactcaacgaaaacaaagttgatttttgtacgttttctgtattaaaccagtcaatggaaataaat  2211700                                                                                <---------ARR14(2)                                                                                --------->GLK1(2)                                                                                --------->ARR14(2)                                                                                <-----------ARR10                                                                                --------->ARR11(3)                                                                                <---------ARR11(3)          ----------->GT1 ----------->GT1                                      <---------ARR14(1)          <---------ANAC55(2)                                          <---------YAB1         <-------TEIL   ---------->DOF2                               --------->AHL20(2)           <- ->AHL20(2)        <---------------AGL15      <---------ATHB12      <<<<<<<<<MYB98   <---------TOE2(2) --AHL20(2)        --------------->AGL15    --------->WOX13(1)     ----------->GT1   <---------TOE1(2) >AHL20(2)--------->ANAC55(2)     --------->TOE2(3)              ------->TEIL  <---------CCA1(2)<----   cacattcgaaattcgtaatatcaatataaagaaaaacattagtattcaatcaaacattttaagtatgtatgttaaaatagcaaatcttatgttattcagt  2211800                                                    --------->AHL20(2)                                                 --------->AHL20(2)                                            --------->AHL20(1)                                            <---------AHL20(2)            <---------ARR11(3)              --------->AHL20(2)            --------->ARR11(3)              --------->ARR11(3)            --------->GLK1(2)               <---------AHL20(1)           --------->RVE1(1)                <---------ARR11(3)    ----------->GT1             <---------YAB1   <---------AHL20(2)                           <------ --------TOE2(3)       <---------YAB1      --------->AHL20(2)                       <------------CBF -----MYB52(1)   <---------TOE2(3)     --------->AHL20(2)                        <---------TOE2(3)   tatggattttaaaaaatctaatgttattaaacttgtgattttaaaatatattaaaaaaatccctaagttatttgaaacattttaagaattggatttttac  2211900                                                         <------------CBF                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                --------->CCA1(1)                   <---------AHL20(2)                          <---------TOE2(3)------>ZmHOX2a(1)                       --------->AHL20(2)                 --------->YAB1     <-----------GT1   ------------>CBF            <---------AHL20(2)              --------->WOX13(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ---------->DOF2 -----GT1   <---------ATHB12<------------CBF    --------->RVE1(1)       <---------ATHB12   tcaaaataactcaaatcactcaaaatataagattgaatacacctcctaaaatatccctcaattgatggtatcaaatcaaagtattttaaattccgcttga  2212000                    --------->ARR11(3)                    <---------ARR11(3)                                                         <-----            ----------->TBP                                                                <---------ANAC58     --------->ARR14(2)                    <---------AHL20(1)                              <---------ANAC58     <---------ARR14(2)                    --------->ARR11(3)                             --------->ZAT2     <---------ARR11(3)            ---------->DOF2                                        --------->At4g35610     --------->ARR11(3)         --------->ANAC58                                    <---------ATHB12     --------->KAN4(2)          --------->ANAC58  --------->YAB1                    --------->ICU4    <---------KAN4(1)         ---------->DOF2    <---------YAB1        --------->YAB1<---------ICU4    <---------GLK1(1)     <---------TOE2(3)--------->AHL20(1)      --------->AHL20(2)--------->YAB1<-   ---------->TaMYB80--------->GLK1(2)     <---------ARR11(3)------->GAMYB <---------TOE2(3)   <-----   gtctgaatatccctataaatgagattttgaggcaaagcaaagtgatatattttgataatacaacgaaaatgaattataagattggaatcatgagcttgct  2212100                                        --------->ARR11(3)                                   <-----------HVH21                      <----------DOF2   <---------ARR11(3)                    ------>ZmHOX2a(1) ----------->ARR10                    <---------------AGL15                   <-----------------AGL3              <---------ALFIN1             <---------YAB1 ----ANAC58 --------->YAB1       --------->LBD16   --------->ZAT2                <---------YAB1 --------YAB1      <-----------------AGL2          --------->At4g35610    ----------->GT1 ----ANAC58<---------ATHB12     <-----------RAV1(2)<---------At4g35610    --------->YAB1   cgtgattacttcaataatcttcctctttctggttccaggttagaccttctatgagctgcacatttcattttgtctatagtaatattatgagaaatatcaa  2212200            --------->AHL20(2)                      --------->DAG2            <---------AHL20(1)       <---------AtLEC2    ---------->DOF2                         ----            --------->AHL20(1)     <---------YAB1  ---------->DOF2---------->DOF2               <----  <---------ZAT6          <-----------GT1   ----------->GT1  ----------->GT1          ----------->HVH21   tatggtgttattgatatattagttgttttttctaattttgaatgaattgtagataaagtagaagcgcaaaaagaatgcattggaccatgtgatatgttta  2212300                                                             ---------->DOF2                                                           <---------HSFB2a(2)                                                           --------->HSFB2a(2)                                           <---------YAB1 <---------LBD16                                         --------->YAB1  <---------ANAC58                   <---------ANAC46     <---------ATHB51 <---------ANAC46                <---------ANAC58        --------->ICU4   <---------ANAC58       --------->ANAC58      ---------->DOF2   <---------WRKY12       --------->ANAC58     <------ZmHOX2a(1) --------->WRKY18(1)                  <----------DOF2     ---------->DOF2      --------->MYB59<---------ICU4  <---------AtLEC2      <------ZmHOX2a(2)   <-----------HVH21 <------NtERF2 --------->CCA1(2)<-----------RAV1(1)       <---------ARR14(2) ----->ANAC55(2)<---------ANAC46 <------ZmHOX2a(1)  --------->ALFIN1          --------->ARR14(2) -----LBD16     <---------ANAC58----------->GT1<---------WRKY38(1)     --------->YAB1   cggactgtcaagccgcttgcgtcgggattaggaaaggatacaattatggtcaatgtgttgcctggaagcccaaggatgacgatccctttacatgttgttg  2212400                                             <---------ICU4                                            <---------YAB1                                          -                                           --------->TOE2(3)         <---------ARR14(2)             <                                         <---------ATHB12 --------->ATHB12                     ------      <-----------GT1                    --------->ICU4--------->YAB1--------->ARR14(2)   --------->ANAC58     --------->AHL20(2)----------->RAV1(1)--------->YAB1 <---------YAB1    <--------P     --------->ANAC58   ctacaaattaactccataactaaaacaacatatatgttttgaaatcatcaataccaattttgattagttcaaatcgggttgtaatggaagagaagcattg  2212500       --------->WRKY12       --------->WRKY38(1)      <---------MYB52(1)     <-------GAMYB    <---------MYB46(3)                                        ------>ZmHOX2a(1)    ------>ZmHOX2a(2)                            ---------->DOF2                           <---------CCA1(2)   <---------YAB1   <---------ANAC55(2)       <---------HSFB2a(2)   <----------DOF2        <---------  <---------ARR11(3)--------->ANAC55(2)<----------DOF2 <---------ALFIN1              ================ -------->ICU4 <---------ICU4       <---------ARR11(3)<---------ZAT18                <----------DOF2 ---------YAB1 --------->YAB1---------->DOF2  --------->HSFB2a(2)  <---------ICU4<-------MYC3 ----->HVH21  <---------ATHB12      --------->ARR11(3)--------->ZAT18            ------->MYC3     ---   acatgatcgttggccaaacatcacatgactaaaaaggagacctttcttctgtaaagcacacttcctccatctttgcaatctcatgtgcttcttgtctctc  2212600  Previous    Next  AGI:  At3g07005.1    Description:  LCR43 (Low-molecular-weight cysteine-rich 43). similar to LCR44 (Low-molecular-weight cysteine-rich 44) [Arabidopsis thaliana] (TAIR:AT3G06985.1); contains domain LC43_ARATH_P82758; (PD687080) Range:  from: 2212069    to: 2212419    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version