Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->YAB1                                                     <--------ATHB1                 --------->ZAT14                                      <---------MYB46(3)                            <---------ZAT14                                   <---------MYB46(3)--------->ATHB12             --------->ZAT6                    --------->ANAC58<---------ANAC58<---------ATHB12      --------->ARR11(3) --TEIL             --------->ANAC58<---------ANAC58--------->ICU4        <---------ARR11(3)   atgttttgttttgcaccagcactagccaaattgcaattggttgttcttccatcaatgatgggtttagaattttgaagagctctaactgtagagacatagt  2200800                                                      <---------AHL20(2)                                           ---------->DOF2         --------->At4g35610     --------->YAB1      --------->AHL20(2)         <---------At4g35610  --------->WOX13(1) <---------MYB52(1)                        <-------MYC3   --------->DAG2           <---------ATHB12    ----------->GT1                            ------->MYC3  ---------->DOF2 --------->AHL20(2)    --------->TOE2(3)                   <---------------AtSPL8---   ctctaaaagtaatctgaaaattcaatacaaatcaatcgtcttcattaaaccggtattaaatatggaatcaaaccatacagagtacaaacaaaacgtgttt  2200900           <---------ARR14(2)           --------->ARR14(2)           --------->ARR11(3)           <---------ARR11(3)                                             --------->ARR14(2)          --------->GLK1(1)                                               <---------ARR14(2)          <---------GLK1(1)                                              ============================        <------ZmHOX2a(1)                                                <------ZmHOX2a(1)     --------->At4g35610                                                ----------->GT1             <     <---------At4g35610             <---------TOE2(3)         <------ZmHOX2a(1)                    -   <---------WRKY12                ---------->DOF2           <---------TOE2(3)                <------   <-----------RAV1(2)          --------->ANAC46             <---------TOE1(3)               <------- <-----------HVH21      --------->AHL20(2)      <---------ATHB12     ---------->DOF2   --------->TOE1(3) ------>HSFB2a(2)       <---------AHL20(2)     <---------TOE2(3) ---------->DOF2       --------->TOE2(3)   ctaggtcagaggaaatcttcatatttttaaatatacacaaaggtttactaatgaagttgaattaaggaaaagaaaggatacttacaaaaccatagccttt  2201000                 --------->HSFB2a(2)     ===============================RAV                                     <---------At4g35610     <-----------RAV1(2)                                                    --------->At4g35610 ------>ZmHOX2a(2)                     <---------ALFIN1       <---------ARR11(3) ==============HOX2a_HOX2a            --------->MYB46(3)      --------->ARR14(2) =======HOX2a_HOX2a                  -------->P               <---------ARR14(2)    <---------MYB46(3) ---------At4g35610                --------->MYB46(3)         <-----------ARR10   <---------At4g35610 -------->At4g35610     ----------->RAV1(1)         ----------->GT1         ----------->RAV1(2) ----DOF2        <---------HSFB2a(2)--------->WOX13(1)        --------->ARR11(3)  <-------GAMYB --DAG2 <------ZmHOX2a(1)  --------->TOE2(3)  <---------------------WRI1 <---------ATHB12        <---   tgatctgccaggataagtttcagaaacaacattagcatcaaccacttgtccgaattgttcaaagtatcttctcaaatcatctgcagttgttctccatgtt  2201100                                       <---------YAB1                                     <---------ICU4                                     --------->ATHB12            <---------ARR11(3)      <---------YAB1                <---------AHL20(2)            --------->GLK1(2)     <---------ICU4               --------->AHL20(2)            <-----------ARR10    --------->ICU4               <---------ATHB12            --------->ARR11(3)   <---------YAB1               --------->AHL20(2)     ----------->RAV1(1)       --------->YAB1             ------------>CBF     --------->ANAC46  --------->TOE2(3)                  --------->MYB46(3) ------AHL20(2)       --------->ZAT6--------->ICU4   --------->YAB1             ------------>CBF    -   aaattccccacaaaaatcttcgtaaccctagtatcatgattattagtttgagacatcataaccaataaataatctcttaaaaaccaatttagagaagaaa  2201200                                               <---------AHL20(2)                                               <-----------TBP                                               --------->AHL20(2)                                             <---------AHL20(2)                                             <-----------TBP                                             --------->AHL20(2)                                           <-----------TBP                                           <---------AHL20(2)                                           --------->AHL20(2)                                         --------->AHL20(2)                                         <-----------TBP                                         <---------AHL20(2)                                       <---------AHL20(2)                                       <-----------TBP                                       --------->AHL20(2)                                  <---------ARR11(3)                                     --------->AHL20(2)                                    --------->ARR11(3)                                     <---------AHL20(2)                                   <---------CCA1(2)                                     <-----------TBP                             --------->ARR11(3)                                   --------->AHL20(2)                           <---------CCA1(2)                                   <---------AHL20(2)                        --------->AHL20(1)                                   <-----------TBP                           <---------AHL20(1)                                <---------AHL20(1)                ----------->GT1<---------ARR11(3)                <---------TOE1(3)----------->TBP                  <---------MYB46(3)  <-----------TBP       <---------AtLEC2         --------->AHL20(1)         --------->CCA1(2)--------->AHL20(2) --------->DOF2 <---------TOE2(3)--------->AHL20(2)<---------AHL20(2)     --------->AHL20(2)    <----   cagaaagttgcagggtttaagggtttggaactaatatatatatatatatatatataatgagataagagttgttaaaaaatatatatctatatatatctat  2201300                                                                                <---------AHL20(2)                                                                            <---------AHL20(2)                                                                            --------->AHL20(2)                                                                         <---------AHL20(2)                                                                         --------->AHL20(2)                                                <---------AHL20(2)      <---------AHL20(2)                                                --------->ICU4      <---------AHL20(1)                                             <---------ARR11(3)     --------->AHL20(2)            <------ZmHOX2a(1)               <------ZmHOX2a(1)       <---------AHL20(2)          <---------TOE2(3)               <---------TOE2(3)  --------->ANAC58  <---------YAB1        --------->CCA1(2)               --------->ICU4       --------->ANAC58<---------AHL20(2)    <------ZmHOX2a(1)  ----------------->AGL1--------->ARR11(3)     --------->AHL20(1)          <---- -------TBP----------->GT1       ---------->DOF2<---------YAB1     --------->AHL20(2)          <-----   atataaggagataaggaaattagtttcccaatagaaaaagaaattaggatattattagatggaatgcaattttatttatttattatttgtttgtttttta  2201400                  <---------AHL20(2)              <---------AHL20(2)         --------->AHL20(2)         <---------AHL20(2)         <---------AHL20(1)         --------->AHL20(1)                         <---------YAB1       *TSS        --------->AHL20(2)                  <---------CCA1(2)     <---------MYB52(1)   --------->At4g35610    <---------AHL20(2)                 ------>ZmHOX2a(1)    <---------ZAT14<----------DOF2   --------->AHL20(2)         <-----------HVH21--------->ZAT6   ----------->GT1  <---------ALFIN1 -------GT1   --------->AHL20(2)  --------->At4g35610  <---------YAB1   <---------AHL20(2)   <------ZmHOX2a(1) ----AHL20(2)<---------AHL20(2)   <---------At4g35610--------->YAB1     <-----------GT1<---------At4g35610   atcttttaaattttatttattttttttttttgggtcatctcctctcttatctctatgatgactataccgtttattttcttttcccactctgcttaggaag  2201500                                                       <----------DOF2                                                       <---------DAG2                                                    --------->DREB2C(2)                                                    --------->DEAR3(1)                                                    <---------ALFIN1                                                  <---------ATERF1(1)        <------ZmHOX2a(1)                                             --------->At4g35610         <---------ANAC46                                  <-----------RAV1(1)------>NtERF2      <------NtERF2                                 <---------ARR11(3)--------->ORA47(2)  ------>NtERF2                                 --------->ARR11(3)--------->MYB46(3)  --------->LBD16                              <------ZmHOX2a(1)  <---------ALFIN1     <---------LBD16                     --------->ARR11(3)      --------->GLK1(1)<---------AHL20(2)   <-----------GT1                     <---------ARR11(3)      <---------At4g35610      --------->LBD16                     <---------ARR14(2) <---------ANAC58     <---------AHL20(2)    --------->ZAT6                     --------->ARR14(2) <---------ANAC58     --------->AHL20(2)  --------->YAB1                   ----------->ARR10   <------NtERF2------->GAMYB    <---------LBD16            -----   agaagagagaagagagaagagaagatacttgaggagatgttggcgagagctccaccgccttattttaatttcccggcgaggaataatactatctgtaatc  2201600                            <---------ANAC46                       --------->MYB52(1)<---------STY1(2)                    <---------ANAC55(2)  --------->STY1(2)                   <---------HSFC1(2)                    <---------ANAC58 <---------MYB46(3)                      --------->HSFC1(2)                    --------->ANAC55(2) --------->MYB111(1)       <---------ATERF1(1)                    <---------ANAC46<---------ZAT6--------->ZAT2  ------>NtERF2                    <---------ANAC58--------->ALFIN1             --------->DEAR3(1)               <---------MYB46(3)   <---------AtMYB61         <---------DEAR3(1)              <---------MYB52(1) <------ZmHOX2a(1)<---------ZAT2<------NtERF2--------->HSFB2a(1)              <--------P    <---------DEAR3(1)    <---------At4g35610        <---------HSFB2a(1)             <-------GAMYB <---------LBD16        --------->At4g35610<---------ALFIN1          ------            <---------MYB46(3)--------->ATERF1(1)--------->ARR14(2)  --------->AtMYB61       <-------           <---------RAP2.6(2)<------NtERF2     <------ZmHOX2a(1)----------->HVH21   <---------ARR11(3) ---->YAB1<---------ZAT18 ------->GAMYB<--------P<---------ARR14(2) --------->MYB46(3)    --------->SPL7   ggaatgagattgtgcggttgtttcgtaacggcggaggagtggtagctagaggagctggtttcactcggcgaccactggaaacttcgagctcttacgacga  2201700  Previous    Next  AGI:  At3g06970.1    Description:  RNA binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G46780.1); similar to unknown [Populus trichocarpa] (GB:ABK93394.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 2199659    to: 2201156    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06980.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 50 (RH50) [Arabidopsis Thaliana] (GB:Q8GUG7;GB:Q9M901); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G09730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70956.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Range:  from: 2201473    to: 2204839    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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