Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>MYB46(1)                                                         -                            ------>MYB83                                                            -                            --------->MYB52(1)                                                    <--                 <---------MYB46(3)                                         --------->ANAC46      ---              <------MYB46(1)                                              --------->ZAT18       <---              <---------MYB46(3)                                       --------------->AtSPL8   -----              <------MYB83<---------MYB59        <---------ATHB12  --------->TOE2(3)           ------             <---------AtMYB61                 ------>MYB46(1)    --------->ANAC46     --------->YAB1          <-----------RAV1(1)                  ------>MYB83   <-----------GT1      <---------AHL20(2) ->HVH21<----------DOF2   --------->MYB46(3)----------------->AG<---------ALFIN1  --------->AHL20(2)-   atagctatgactttgttggtggtcatgaccaaacgatacctataaaaccaaatcaggctctatatcacacctcaatgtacacaattttatcaaaatcagc  2192300             <---------ZAT14             --------->ZAT14             <---------SPL7 ------->GAMYB -------->ANAC58                                                                                  --- -------->ANAC46       --------->AHL20(2)                                                         <-- -------ATERF1(1)      <---------AHL20(2)                                  --------->AHL20(2)     <-- ------>MYB52(1)      --------->AHL20(2)                          <---------ARR14(2)              --- ------WRKY38(1)--------->ANAC58                --------->TOE2(3) --------->GLK1(2)          <------- ---->MYB46(3)  --------->ANAC58              ------->TEIL        --------->ARR14(2)  =============== --->At4g35610 --------->SPL7             --------------->AtSPL8 <---------GLK1(2)    <------ZmHOX2a(2) -------->ANAC58--------->ANAC46      <---------TOE2(3)      ---------->DOF2         <---------ARR11(3)   caacgccatggccactgtacgaaatttaaaaacttctattaagttatgaaccctaatttccaaaaaagaatctgaaattgaatactagatcacaattctg  2192400              ------>ZmHOX2a(2)                                                                   ---            --------->ARR14(2)                                                                    ---            <---------ARR14(2)                                                                    ---           <------ZmHOX2a(1)                                                               <---------MYB52(1) ------>bZIP60(1)                                                                        ----------->GT1 -------bZIP60(1)                                                                        <---------ANAC46 -------TGA2(1)                                                                    <---------------AtSPL3 ------>TGA2(1)            <---------MYB52(2)                    <-----------HVH21 <---------------AtSPL8 --ICU4--------->ICU4 ----------->GT1               ----------->GT1          --------->ARR11(3) <---- =================HOX2a_HOX2a                     <-----------RAV1(2) ---------->DOF2<---------SPL7   acatcagaaatgaggatcggaagggggaaacaaaccctactatcgaactgaaccaggttaaatctagggtcagaaagaagacattggagtaccgtttatt  2192500         <---------WOX13(1)       --------->ATHB12      <---------YAB1    ----------------->AGL1  ------>NtERF2 --------->DEAR3(1)                         ----------->GT1       <----------DOF2 ------>ANAC58                  --------->GLK1(2)                 <---------DAG2 ------>ANAC46                 <---------GLK1(1)      <---------AHL20(2)      --------->At4g35610 ------>ANAC58   --------->At4g35610       ----------->GT1    ------>NtERF2   --------->ZAT14 -------GT1   ---------->DOF2  <---------GLK1(2)     --------->AHL20(2)       <---------At4g35610 <--   acgccagcctgattgagaaagctcaagaattgggaatctcttcgatgggaaaatataaaattgccgagctttttttcttctgcagaccgagagagagaga  2192600                            *TSS <------NtERF2                            --------->ANAC58                            --------->ANAC58                           ------->TEIL                           <-------TEIL                           --------->SPL7                           --------->SPL1(2)                         <---------SPL7                                       --------->TOE2(2)                        --------->ANAC58                                      --------->TOE1(2)                        --------->ANAC46                        <---------ANAC46                        --------->ANAC58           <---------bZIP60(1)        --------->TOE2(3)                       <---------------AtSPL3      --------->GLK1(1)   ---------->DOF2                      <------------------SPL14----------->GT1   <---------ANAC58                 <---------HSFC1(2)         --------->DAG2      <---------ANAC58 ----ZmHOX2a(1)  --------->HSFC1(2)       ---------->DOF2      <-------TEIL ------->TEIL   *TSS    <-   ggagatggtgagagtttgaaacttccacgtacggcctcagagagaaaagggtgatatcaaaacgatgcgtttagaaagaacctaagaattagagtagcat  2192700                                                              <---------ARR14(2)                                                           ------->GAMYB                                                         <---------At5g28300                    -----                                                         -------->P ------->TEIL                -----                                                        --------->MYB52(1)                      -----                                                      <---------MYB111(1)                       <----                                                      --------->MYB46(3)                        <----                                                      <---------MYB46(2)                       <-----                                                      <---------MYB52(2)              <--------------        --------->WOX13(1)--------->SPL7     <---------At4g35610 --------->ANAC58     ---------------      <---------ATHB12<---------ATHB12       --------->At4g35610 --------->ANAC46    ----------------    ------>MYB46(1) --------->MYB52(1)    <---------At5g28300 --------->ARR14(2)     ----------------    ------>MYB83  --------->MYB46(3)     <-----------GT1<-----------GT1     ---------->DOF2 --------- ----------GT1  <-----------GT1 ----------->HVH21 <---------MYB59--------->ANAC58 <----------DOF2   taaaccaaatcaatctaataaccaatggtccggtctgaccaatttaccgctccctaactaaccgtatacgcaccgttttaaagtctttccctaatcagaa  2192800 ---->ARR14(2)                                    >>>>>>>>>TBF1 ---->ARR11(3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->GLK1(2)                            >>>>>>>>>TBF1 -----ARR11(3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ANAC46 -----ARR14(2)                 ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----GLK1(2)             --------->At4g35610   >>>>>>>>>TBF1  >>>>>>>>>TBF1    <---------ANAC58 -AGL15                  <------NtERF2>>>>>>>>>TBF1     >>>>>>>>>TBF1          <---------ANAC55(2) >AGL15                  <---------At4g35610>>>>>>>>>TBF1  >>>>>>>>>TBF1       <---------ANAC58  ---- ->AGL1               XXXXXXXXXXXXXXXXXXXX>MIR851-3P >>>>>>>>>TBF1    <------ZmHOX2a(1)   <---------ALFIN1 ->AGL2             <---------------------WRI1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->REM1(1) >YAB1          --------->CCA1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ANAC55(2)  -   tcttgagattacacagagagacagggcagcaaacaaagaagaagaagaagaagaagaagaagaagaagaagaggatgagttgcgttacaccagcacttcc  2192900                                               <---------MYB52(1)                                              --------->LBD16                                        <-----------ARR10                                 ------>ZmHOX2a(1) --------->ANAC46                          <---------ANAC58   --------->ANAC46                    --------->ARR14(2)  <---------ARR14(2)                                        ---                    <---------ARR14(2)  --------->ARR11(3)            <<<<<<<<<TBF1             -----                    <---------ARR11(3)  --------->ARR14(2)        <---------ARR11(3)            -----                    --------->ARR11(3)  <---------ARR11(3)  --------->ANAC58             <---------GLK1(1)       <----------DOF2    <---------ANAC58  <---------LBD16 --------->ANAC58       <---------ANAC46 -->ZmHOX2a(1)     <---------GLK1(1)   --------->RVE1(1)  ---------->DOF2          <---------ANAC58 ----->ZmHOX2a(1)  <---------CCA1(2) <---------GLK1(2)----------->RAV1(1)          <---------ANAC58   tccttcactctttactaatgggtatctttcgtctcctcagaatatctccgtaagcgccacaaaagcaatttcttcttctctacttccttggaaatgccaa  2193000                                                                           --------->MYB52(2)                                                                         <--------P                   --------->At4g35610              ------>MYB83      <---------TOE1(3)                   <---------At4g35610         >>>>>>>>>>WRKY38       <---------TOE2(3)             -         <------MYB83                          >>>>>>>>>>WRKY43  <------MYB46(1)            <--------         <------MYB46(1)                       >>>>>>>>>>WRKY26  <------MYB83           <---------ANAC46     <-----------RAV1(1)  <----------DOF2   <---------At4g35610 --------->MYB46(2)      <---------ANAC58 ------->DOF2 <---------TGA2(1)             --------->At4g35610 --------->MYB59         <---------ANAC58 ---->ANAC58  --------->bZIP60(1)   <---------YAB1  -------->P<---------MYB52(1)--------->GLK1(2)  <- ---->ANAC58  <---------bZIP60(1)<---------AHL20(2) ------>MYB46(1) ---------->DOF2<-----------RAV1(1)   gaaagttttgttggtgatgtaatctgaacttttgttttatttttgcagatgaccaacttgaacagttcggtaaaggttagtgattctggtgcttataaat  2193100                                                                                        --------->ARR11(3)                                                                                        --------->GLK1(2)             --------->TOE1(2)                                                          <---------ARR14(3)  <---------ANAC46                          <---------At4g35610                         --------->ARR14(3) <------NtERF2 --------->SPL7               --------->At4g35610                         <---------ARR11(3) ----->NtERF2--------->TOE2(2)    <---------TOE1(2)                                 --------->YAB1--- -YAB1<---------YAB1        <---------MYB52(1)   --------->ANAC46                --------->WOX13(1)-- --------RAP2.6(2)     ------>NtERF2  <-------TEIL                            ------->TEIL     <-----   ggcgccttgtgatagcctacgatggcacccgttttgcaggttcgtcttctcacaaaacttgtgttcttaagtttttgatgcatctatcaaaatcttgttt  2193200  Previous    Next  AGI:  At3g06940.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.1e-42 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 2189485    to: 2192628    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06950.1    Description:  tRNA pseudouridine synthase family protein. similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G34150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70934.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) Range:  from: 2192691    to: 2194327    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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