Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->HSFC1(1)   <------MYB46(1)                    --------->HSFB2a(2)  <---------At4g35610                    <---------HSFC1(1)   <------MYB83                    <---------HSFB2a(2)  --------->At4g35610               <---------MYB52(1)       <---------MYB46(3)                                          <             <---------ANAC46          <---------ANAC46                                           ---            --------->ATERF1(1)        <---------ANAC58                                          <---            --------->DEAR4(2)         <---------ANAC58                                         <----            --------->RAP2.3(1)      --------->MYB55(2)                                        ------            <------NtERF2            <---------MYB46(3)                                        ------           <---------ATERF1(1)      <---------RAP2.6(2)                                        <-----           <---------RAP2.3(1)      --------->ALFIN1                                          <------           ------>NtERF2          <---------At4g35610                                         -------           --------->ABI4(2)      --------->At4g35610                                   --------->ZAT2          --------->DEAR3(1)      <---------O2----------->GT1                           <---------ZAT2          <---------DEAR3(1)      <---------TGA1a                              <------NtERF2  <------         --------->ATERF1(1)      <---------ANAC46                          <------NtERF2    <-------         --------->RAP2.3(1)      <---------bZIP60(2)                 <-----------HVH21<---------AGP1         <---------ABI4(2)       <---------AtMYB61          <-----------HVH21 --------->LBD16<-------        ====================================MYC_MYB        --------->LBD16  <---------LBD16 <--------        <---------RAP2.3(1)     <---------ZAT14           --------->LBD16  --------->LBD16--------->ALFIN1        ------->GAMYB  ---------->DOF2<------NtERF2      <---------LBD16 <---------LBD16--------->At4g35610     --------->MYB52(1)=====================bZIP_DOF    --------->MYB52(1) ------>NtERF2<---------At4g35610   gcgactataacggcgccgttttcgagaaagagagtgaggtggctggtgaggctaaaactcccggtgagccaatgtcccggcggaacatagagctgggccc  2136600      <---------DREB2C(2)      <---------DEAR3(1)      <---------DEAR4(1)      --------->ETT(1)      <---------RAP2.3(3)      <---------At1g77200     <---------ORA47(1)    <-----------HVH21   <-----------RAV1(1) <----------DOF2 ---------DAG2 --->NtERF2 ------ALFIN1 --NtERF2 --->TCP23 --->TCP15(2)                                                                        --------->ARR14(2) ----ATERF1(1)                                                                       --------->GLK1(2) ---TCP20                                                                            <---------ARR14(2) -->PCF2<------NtERF2                      --------->ANAC58                  <---------At4g35610 ---TCP15(1)                               --------->ANAC46                  --------->At4g35610 --PCF2<---------RAP2.3(1)       <---------ANAC46   <---------ZAT14        --------->MYB46(3) ----TCP11(1)          --------->CCA1(2)   --------->ANAC58    <-----------GT1       <---------ARR11(3) -TCP15(2) ---------->DOF2  --------->MYB52(1)     --------->ALFIN1      ----------->RAV1(1)   cacctttgtcggcgaaagacataagatagaaaacggcgttttgaaacgcaagagtgttgagcgttttgccatctccaacagctccaaaatctgtaatgga  2136700                                                             --------->DOF5.7(2)                                                             ----------->HVH21                                                            --------->At5g28300                                                            --------->LBD16                                                           <---------ANAC46                                                          <------NtERF2                                                          --------->ATERF1(1)                                                         <---------ATERF1(1)                                                         ------>NtERF2                                                         <---------RAP2.3(1)                                                        <---------DEAR3(1)                                                        --------->DEAR3(1)                                                        --------->RAP2.3(2)                                                       <------NtERF2                                                       --------->RAP2.6(1)                                                       --------->RAP2.3(1)                              <------NtERF2            --------->DEAR4(2)                             <---------ATERF1(1)       --------->ERF1                             --------->ORA47(1)        --------->ATERF1(1)                             --------->LBD16           --------->RRTF1(1)                             ------>NtERF2            <---------ATERF1(1)                            <---------ATERF1(2)       --------->LBD16                            --------->DEAR3(1)       --------->ANAC46     <---------ARR14(2)                            --------->ATERF1(2)      --------->LBD16   <---------ANAC58                           <---------LBD16          <---------LBD16    <---------ANAC46                           --------->ATERF1(1)<-----------ARR10        ----------------->AGL1                      --------->YAB1          --------->ARR14(2)       <---------ANAC58      <---------AtMYB61  ------>ZmHOX2a(2)    <---------ARR14(2)<---------TOE1(3)     --------->ZAT14  --------->ATHB12       <---------CCA1(2) <---------DOF5.7(2)    --------->ZAT6    --------->ALFIN1  <---------ICU4    ---------->ID1------>NtERF2   <-----------------------TaNAC69(2)    <---------ANAC46 <---------ATHB12<-------TEIL<-----------GT1------->TEIL  ----------->GT1   gacactgtgtggtcttgtactcaatgatcgccggccaagttcgtcgcatattttcccggcgccgtgaacgtttgcgtaaatgggaataacactggttaat  2136800                                                                                                -----                                                                                            ------->GAMYB                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                    --------->GLK1(2)      --------->LBD16                 --------->ANAC46                    ------->PIF5    <---------ARR14(2)    <-----------RAV1(2)            --------->MYB52(1)                    <-------PIF5    --------->ARR14(2)  --------->CCA1(2)              --------->MYB46(3)                   ====================RAV              <------ZmHOX2a(2)             <------ZmHOX2a(2)                   ----------->RAV1(2)                 --------->ARR11(3)            --------->ARR14(2)                 <---------ALFIN1  <---------GLK1(2)   <---------ARR14(2)            <---------ARR14(2)              <-----------GT1 ------->GAMYB            --------->ARR14(2)       --------->ARR14(2) <-         <---------GLK1(2) ----------->RAV1(1)         --------->AGP1           --------->GLK1(2)----       <---------YAB1     --------->REM1(1)       <-----------GT1               <---------ARR14(2) --   gccagtatcaagattgttaccacctgctacaacagaagaatctgagttagaattacagatccaggtttgtcaaactgtttagaatccgatccaacggaat  2136900                                                         <----------ID1                                                     ---------->DOF2                                                  --------->LBD16                                                  <---------HSFB2a(2)                         <------ ---->ICU4             ---------->DOF2            --------->HSFB2a(2)                        <------- --------YAB1      ----------->GT1            --------->ARR14(2)                --------->ANAC55(2) ----->YAB1 ----------->GT1                   <---------ARR14(2)                <---------ANAC55(2) --------->GT1--------->AHL20(2)             <---------GLK1(1)      ---------->DOF2        --------->YAB1   gatgaaaaatagagaagtaaatagttaaagaaacgatgaagaagagcaattccgagaaagggacaacctagaaagaagaggtatgtaatgtaatggtagt  2137000                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                         <---------ANAC46                                                       <-----------HVH21                     --------->ANAC58               <---------ZAT2                  *TSS  ------->TEIL               ------->TEIL <---------YAB1                   <---           ---------->DOF2        --------->ARR11(3)<---------At4g35610       --------->DAG2     <---      --------->ANAC58--------->ZAT18              --------->GLK1(2)  ----------->GT1         -------      ----------->GT1--------->ANAC58  <---------AHL20(2)--------->ETT(1)    ---------->DOF2  <------ ---MYB46(3)--------->DAG2        <---------ARR11(3)--------->At4g35610----------->GT1--------->DAG2 -P   --------->ANAC58<---------ZAT18<----------DOF2--------->ZAT2---------->DOF2    ---------->DOF2   taagagagaagcaaaaagagagaacgcacttactgacatctttatttgtaacgaagctgtcggataattaaagagataaaaaagctataaagtgaagaac  2137100     >>>>>>>>>E2Fc     <------NtERF2     >>>>>>>>>E2Fd                                                                                ---    ------>NtERF2                                                                                 ---   --------->ANAC58                                                                               ---   --------->ANAC46                                                                               <--   --------->ANAC58                                                                             -----  <---------LBD16                                                                               ----- <---------ANAC58                                                                               <---- <---------ANAC58                                                                              ------ -------DOF2                                                                     <---------ARR11(3) - ------DAG2                                                        <------ZmHOX2a(1)<----------DOF2 - -->ARR11(3)     --------->ANAC46                     ---------->DOF2    <------ZmHOX2a(1)   -------- ---ARR11(3) <-----------GT1                  >>>>>>>>>TBF1  --------->YAB1      --------->ARR11(3) -   ttttcgcgccaaatgtaaccagacactcagagagagagagagagagaagaagaagagaaagaataagaaggagaaggagaagagttctttcttcgtaacc  2137200     --------->ANAC46   --------->ANAC58   --------->ANAC46   --------->ANAC58 --------->AtMYB61 <---------ALFIN1 ----------->RAV1(1) ------>ANAC58 ------>ANAC58 ------>ANAC46 -------ALFIN1                                                                                      - ---->AtMYB61                                                                                     --- -->GAMYB                                                                                        ---- -----ALFIN1                                                                                     <--- --->MYB46(3)                                                                  <-----------GT1------- -------->ANAC58                                      ----------->HVH21    <---------AHL20(2)-------- -------->ANAC58             <---------AHL20(2)      <---------WOX13(1)   <---------YAB1     <------- ->ARR14(2)     <---------TOE2(3)                  --------->ATHB12   ------->TEIL      --------->TOE2(3) -------->ANAC46<---------TOE1(3)                 <---------YAB1 --------->MYB52(1)    --------->YAB1   acaccacacaaaacagtgaaggttttttttttttattctgagacaaaacagtatgattgacagaaaaaaacgaatttttatttacagaaacataaataaa  2137300          ---------->DOF2                                            <---------AHL20(2)    <---------HSFB2a(2)                                              --------->AHL20(2)    --------->HSFB2a(2)                                              --------->AHL20(1) -------->ICU4                                                       <---------AHL20(1) ------>AHL20(2)                                                    --------->AHL20(2)-------->HAHB4 ----->AHL20(2)                                ----------->HVH21    <---------AHL20(2)<---------ICU4 ------AHL20(2)        <------ZmHOX2a(1) <------NtERF2         --------->LBD16       --------->ICU4 -->AHL20(2)         <---------TOE2(3)   --------->RAP2.3(1)  --------->ANAC46       <---------ATHB51 ->AHL20(2)    >>>>>>>>>>GT-3b          ------>NtERF2        <---------LBD16       --------->YAB1 --AHL20(2) ----------->GT1        <---------WOX13(1) --------->TOE2(3)        ----------->GT1    <--   taatttttagaagaaagaaaaataaggaaggaagaagattgacgccgaaatgacagccttatatgcgcaaataaattgattttgttaataatgcgaaata  2137400                                                                 <---------TOE2(3)                                                             --------->TOE2(3)                                                            --------->ATHB12                       <-                                                            --------->YAB1                         --                                                            <--------HAHB4                        <--                                    <---------ANAC46       --------->ICU4                         ---             --------->CCA1(2)  <---------ANAC58           <---------YAB1                    --------            <---------ARR11(3)  <---------ANAC58      --------->YAB1   --------->YAB1        --------            --------->ARR11(3) --------->ATHB12----------->GT1<---------YAB1        --------->ANAC46    --------->AHL20(2)    --------->ARR11(3) ----------->GT1<---------ICU4<---------ICU4     -------- ----ZmHOX2a(1)       ---------->DOF2    ---------->DOF2   <---------ATHB12      --------->ZAT14-----   ggaatataaaataagatatatagagaaagaaattgattgtgggaaaagagagaaaatagtaatcattaatgtataatcaatactatacactatttaagca  2137500  Previous    Next  AGI:  At3g06770.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G49215.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G49215.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44838.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); Range:  from: 2134806    to: 2137018    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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