Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------ANAC46                   <---------ANAC58                   <---------ANAC55(1)                   <---------ANAC58                 --------->SPL7              <------MYB83              <------MYB46(1)          <------ZmHOX2a(1)        <---------TOE2(3)  <---------MYB52(1)      <---------ANAC58 --------->LBD16 <---------At5g28300 --------->At5g28300      <---------ANAC46         --------->ARR11(3) ---GLK1(2)  <---------------AtSPL8                <---------ARR11(3) -->ARR10<---------YAB1   <---------ANAC58----------->GT1     <-------TEIL       <---------ZAT6   cgccgtaatttaggattggtaccgtgttgtttgcatttgagatgtggtaagaatgtcttctagtttcatagatgaagaatgtagtcttaagacatttgtt  2126000                                                         <------ZmHOX2a(2)                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                      <---------DEAR3(2)                                                     --------->ETT(1)                        <-------TEIL                     --------->TOE2(3)             <-----------HVH21                      --------->LBD16                     --------->TOE2(2)          ------>ZmHOX2a(2)                       ------>ZmHOX2a(2)          --------->MYB52(2)   --------->DAG2 --------->ARR11(3)                       <------ZmHOX2a(2)      <---------ZAT6 <---------MYB59          <---------AGP1      <---------bZIP60(2) --------->ARR14(2)      --------->ALFIN1 --------->MYB52(1)<---------MYB46(3)       <-----------RAV1(1) <---------ARR14(2)    <---------ANAC46<---------ANAC55(2)<---------At4g35610------>ZmHOX2a(2)       <-----------GT1   tgtatgcagtgttcgtttcaatacctaagtgaaaaggttagagctgttgatctggtcggatccaagttatgtggcacatcaaattcacgatccggtccat  2126100                                             ---------->DOF2                                           <---------YAB1                                        --------->TGA2(2)                                       <-----------TGA1                                      <---------bZIP60(1)                                      --------->bZIP60(1)                                      --------->O2                                      <---------O2                                      --------->TGA2(1)                                      <---------TGA2(1)                                      <<<<<<<<<<HY5                                      >>>>>>>>>>HY5                                      --------->ANAC55(2)           <-------GAMYB                                      <---------ANAC55(2)           <---------ANAC58                                     <-----------STF1           <---------ANAC58      --------->ANAC58                                     ----------->STF1           <---------ANAC58  --------->LBD16 ---                                    <---------TGA2(2)        <---------CCA1(2)   <---------LBD16 <---                                   ----------->TGA1     <-----------GT1         <---------LBD16<-----                                   ----------->HVH21   ---------->ID1<---------WOX13(1)    --------->ICU4        --------->ZAT14          --------->CCA1(2)     <-----------GT1       ---------->DOF2  <------    --------->ZAT6              <---------ARR11(3) <---------DAG2   <---------ANAC58  --------->ANAC58  <-----------GT1               --------->ARR11(3) <----------DOF2 <---------MYB46(3)--------->SPL7 <   gtaataacactgtagcttaaacttggaagagagagatatgacgtcattaaagactttttccccatttcttggttgacattaaaccgggacgaaagtatta  2126200              <------ZmHOX2a(1)        <---------ICU4                                                                         <-----        <--------HAHB4   --------->ANAC58                                                     <------        --------->ATHB51 --------->ANAC46                                                    --------       <---------YAB1    --------->bZIP60(1)                                                 <-------       --------->ICU4    <---------bZIP60(1)                                              --------->MYB55(2)     --------------->AGL15                                                                <---------MYB46(3)     <---------------AGL15                                                               <---------ANAC58    ----------------->AGL3                                                               <---------ANAC46    ----------------->AGL2------>NtERF2         <---------ATHB51                         <---------ANAC58  --------->ANAC46    --------->ANAC58    <------NtERF2                                 <<<<<<<<<E2Fd ------>AHL20(2)      --------->ANAC58   ------>NtERF2                                  <---------LBD16 ------YAB1  <----------ID1              <---------ZAT18                   <---------ANAC46<-------GAMYB ---HAHB4    ----------->GT1   xxxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------ANAC58--------->ALFIN1 ---YAB1--------->ATHB12 --------->ANAC58--------->ZAT18                   <---------ANAC58<------NtERF2 -----------GT1       --------->ANAC46  <---------RAP2.6(2)      ------>ZmHOX2a(1)      <<<<<<<<<E2Fc   ttaaacaccattattaggaaaaacacgacgccattcgaaatggcgcccaaattatgcgaaaattttcctacagggttatgtgcgatatttggcgggtggc  2126300                                                        ---------->DOF2                                                   <---------AHL20(1)                                                  <---------ATHB12                                              ------------>CBF                             <---------                                             --------->ANAC58                             --------->ATHB51                           ----------->GT1   --------->ANAC58                             --------->ATHB12                 <---------ANAC55(2)       ---------->DOF2                               <---------YAB1 -NtERF2         --------->ANAC58      <----------DOF2 --------->AHL20(2)                <---------AHL20(2) ---MYB46(3)     ----------->GT1     ---------->ID1--------->AHL20(2)                  --------->YAB1 ->ALFIN1        --------->ANAC58  <---------ANAC58--------->AHL20(1)       ------------>CBF --DEAR3(1)    <------ZmHOX2a(1)   <---------ANAC58<---------AHL20(2)       --------->MYB46(3)     <-   tctagcctgatattagaggacgtaaacaggggtaatttcgtcttttaaagcaataaattaaagctagggtttagccgaaccaatttcatttataattggc  2126400                                      <----------DOF2                                  <---------MYB52(1)                                <---------MYB46(3)                             <------MYB83                             <------MYB46(1)                           ----------->HVH21                            --------->MYB59                --------->RVE1(1)                            <---------MYB46(3)            --------->GLK1(2)                            --------->MYB55(2)            --------->ARR11(3)  <------MYB46(1)         <---------MYB52(1)              <---------ARR11(3)  <------MYB83       <---------ARR14(2)                  --------->CCA1(1) ---CBF              --------->ARR14(2)                  --------->RVE1(1) --------MYB52(1)   *TSS<-----------RAV1(1)            --------->AHL20(2)                       <----   catttggtttagtttttgtgaggtatctgttgggtcgtttctttgaaatcaaaaaaaaaaaatctctgtttctctgacactctctctctctgtttctact  2126500                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                               ------>ZmHOX2a(2) <---                           <---------ALFIN1                                   <-----------------AGL1                          ------>ZmHOX2a(2)                                   --------->GLK1(1)  ----                        --------->ARR14(2)                          <---------ANAC58             ----     <-------TEIL   ----------->RAV1(2)                             <---------ANAC58     --------->GLK1(1)    --------->CCA1(2)   <---------ARR14(2)                      <---------ANAC58         <---------GLK1(1) ------DOF2         <---------LBD16<----------DOF2              <---------ANAC58        --------->ARR14(2)   ttcaagattcaaatttttgttcccctgatccactcgtctttgaattctcatcaagtcttatatgtttcttgcctactctgatctctatcggaaaccctag  2126600                                                     <---------ZAT2                                                     <---------At4g35610                                                 ------>ZmHOX2a(1)                                       ------>ZmHOX2a(2)             <---------ANAC58          =================HOX2a_HOX2a   <-----------ARR10                  <------ZmHOX2a(2)   --------->ARR14(2)                 ==================HOX2a_HOX2a   <---------ARR11(1)                <---------ARR14(2)   <---------ARR11(3)                --------->ARR14(2)   --------->ARR11(3)       --------->ANAC46     ===========================HOX2a_HOX2a   <---------ARR14(2)       --------->ANAC58 --------->ARR14(2)                --------->DAG2  <---------CCA1(2)         --------->ANAC58 <---------ARR14(2)      ------>ZmHOX2a(2) ------TEIL  <---------ANAC58        <---------ARR11(3)             <------ZmHOX2a(2) ----ZmHOX2a(2)          --------->ZAT18   <---------MYB46(3)      <---------ARR14(2)     ------>ZmHOX2a(2) ------ARR14(2)          <---------ZAT18 <---------LBD16           <---------ARR11(3)    <---------At4g35610 ------ARR11(3)   --------->ZAT6     --------->ARR11(3)      <---------YAB1   ---------->DOF2 ----->ARR14(2)----------->HVH21 --------->YAB1----------->RAV1(2) --------->ARR14(2)    --------->At4g35610 ----->AGP1  >>>>>>>>>>WRKY18    <-----------GT1 ==========================HOX2a_HOX2a <---------ZAT14   atccatatcttcttgacttgacactagttcacgaatcacgatctgcggttcctgaagctggtaatgctagatcccaccgagaaagtgagtgatctgattc  2126700                                            --------->ANAC58                                            --------->ANAC46                                            --------->ANAC58                                     --------->TOE2(3)                                     --------->TOE1(3)                             --------->ICU4<---------ZAT18                            <---------WOX13(1)                        ------>ZmHOX2a(2)  --------->ZAT18      --------->ANAC55(2)      --------->ANAC58                       <------ZmHOX2a(2)---------->DOF2        <---------TOE1(3)       ==============              --------->ARR11(3)   <---------TOE2(3)           <---------TOE2(3) --------->ATHB12              <---------ARR11(3)   <---------TOE1(3)           --------->MYB59 --------->GLK1(2)   --             --------->GLK1(1) ----------------------->TaNAC69(2)          --------->YAB1--------->ANAC58             <---------CCA1(2)--------->ATHB12  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ---------->DOF2   cctcttctcgctctgatatctagcgatcggattgattaagcttaacgcgctactacttctgtgtttaggtaatcgattcagaatcaatggaaagcaaact  2126800                                                                                             <-------                                                                                        --------->ANAC58                                                                                        --------->ANAC46                                                                                        --------->ANAC58                             --------->At4g35610                                   <---------SPL7                             <---------At4g35610                                 --------------->AtSPL8                            ----------->RAV1(1)                                  <---------------AtSPL8                            XXXXXXXXXXXXXXXXXXXX>MIR834                    --------------->AGL15                          <---------At4g35610                              <---------------AGL15                          <---------ZAT2                                  <-----------------AGL1                          --------->ZAT2                                  <-----------------AGL3                          --------->At4g35610       --------->ANAC46      ----------------->AGL3     <---------------------WRI1                    --------->YAB1         ----------------->AGL1 ========bZIP_DOF       --------->ANAC46     ------->TEIL                 ----------------->AGL2 ------->TGA1a<------ZmHOX2a(2)        --------->ICU4--------->At4g35610  <-----------------AGL2   cacatcagtagatgcgatcgaagaacacagcagcagtagcagtaatgaagctatcagcaacgagaagaagagttgtgccatttgtggtaccagcaaaacc  2126900  Previous    Next  AGI:  At3g06730.1    Description:  thioredoxin family protein. similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42813.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain (InterPro:IPR013766) Range:  from: 2124223    to: 2126148    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g06740.1    Description:  zinc finger (GATA type) family protein. Identical to GATA transcription factor 16 [Arabidopsis Thaliana] (GB:Q8LG10;GB:Q8VZR1;GB:Q9M7Y0); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G49300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44870.1); contains InterPro domain Zinc finger, NHR/GATA-type; (InterPro:IPR013088); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) Range:  from: 2126420    to: 2127473    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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