Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->DEAR3(1)                                                                               <---------ANAC58                                                                               <---------ANAC46                 ----------->TGA1                                              <---------ANAC58                 ----------->HVH21                                             --------->O2               --------->ALFIN1                                 --------->DEAR3(1)             <---------ANAC58                             ===============================bZIP_DOF             <---------ANAC58                    <---------ANAC58              <---------O2             <---------ANAC46                    <---------ANAC58              <---------TGA1a           <------MYB46(1)                     <---------MYB52(1)------>NtERF2 --------->TGA1a           <------MYB83                      <---------ANAC58   ----------->HVH21         <--------P <---------DEAR3(1)       <---------ANAC58  --------->ORA47(2)       <---------MYB46(3)         <---------ANAC58        <----------DOF2     <------NtERF2    ------>ZmHOX2a(1)             <---------ANAC58    <---------ZAT18       --------->ANAC46   ttactcctctggttggggtgtgacggtgtctccttggcttcttgattccgttcttgtgggctttcgccgactggttatgcgccgtgtgattcttcgactt  2117800                                                  --------->ANAC58                         --------->CCA1(2)                                                  --------->ANAC58                        <---------ARR11(3)                                                --------->MYB52(1)                        --------->ARR11(3)                                               --------->TOE1(2)                     <---------ANAC46                                               ------->GAMYB                     ------>ZmHOX2a(2)                                              <---------MYB52(2)                <------ZmHOX2a(2)                                              --------->MYB46(3)               --------->ARR14(2)                                            --------->MYB52(1)                 <---------ARR14(2)                                       --------->AHL20(2) <-----------RAV1(2) --------->GLK1(1)                                   <---------AHL20(2)   ----------->RAV1(1)   <---------GLK1(1)   ---   ggccatctctgagacacaagaccacaatacaaactattcaattgaataacgaacgaaacaacagggggaaatgaagccagagatcggccgtagatataag  2117900                                   --------->ZAT2                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                                 --------->ANAC46                                --------->CCA1(2)                             ----------->RAV1(1)                               --------->AGP1                            <------NtERF2                               --------->ARR11(3)                       <---------ATERF1(1)                               <---------AGP1                           ------>NtERF2                               <---------ARR14(2)        --------->ANAC46--------->ATERF1(1)           --------->ZAT14     --------->ARR14(2)      --------->ANAC46 <---------SPL7           <---------ZAT14     <-----------ARR10      <---------LBD16  <---------ANAC58       --------->TOE2(3)       <---------ARR11(3)  <----------DOF2     <---------ANAC46             <       --------->TOE2(2)     ----------->ARR10  <-----------GT1     --------->ANAC46              ---      ----------->RAV1(2)    <-------TEIL   <------MYB83--------->LBD16<---------ANAC58          <---     -------->P           ----------->GT1   <------MYB46(1)      --------->ARR14(2)     --------->TOE1(3) ------->DOF2<---------ZAT14<--------P   <---------MYB52(1)      <---------ARR14(2)     --------->TOE2(3)   aaaagctaacctgagtactgagagagagaggtagatctgctcggctaggtttactttccgcgatacaaatacggcgtctgcaacacaaaaccctaatttc  2118000                                         --------->AHL20(2)                                 --------->ZAT18                               ------->MYC2                               <-------MYC2                               <-------MYC3                               ------->MYC3             *TSS<----------DOF2 <---------ZAT18             --------->ZAT18  <---------TGA1a             <---------ZAT14  --------->TGA1a    --------->CCA1(2)             <---------ZAT18 ------>MYB83<---------AHL20(2)      <---------AHL20(2)     ------>MYB46(1) --------->YAB1    <---------AHL20(2)              <----- ---------WOX13(1) --------->AHL20(2)   <---------ATHB12       --------->AHL20(2)       ---------->DOF2 ------>ATHB12   =======================bZIP_DOF--------->ARR14(2)                      ============= ------YAB1  --------->ZAT14--------->MYB52(1)  <---------ARR14(2)                  --------->YAB1   tgattgaatttatagtggactttaaatgaccaacgtgccctaataaatcatatatgggcctctaattaatctatctcgttgctaaatcatataagcccat  2118100                                                                <---------------AGL15                          --------------->AGL15                 --------------->AGL15             --------->O2 ======================================================MADS_MADS             ==================bZIP_DOF                        <-----------------AG             <---------ANAC58              --------->DAG2      <-----------------AGL1             <---------ANAC58             ---------->DOF2      <-----------------AGL3             <---------O2 <---------------AGL15              <-----------GT1             <---------TGA1a<------------CBF    <---------At4g35610    ------->TEIL    <----------DOF2  ----------->TBP      <---------AHL20(2)            --------->ANAC58 -------CBF  <---------ANAC46    <---------ANAC46<---------MYB52(2)                     --------->ANAC58 ======================bZIP_DOF  ----------->GT1--------->At4g35610        *TSS<----------DOF2   tgaatgaacccagagtcgtggccttttacaaattggggtataaataaagcagcaaaccatttttttcaaaatttggaatttctttgactcaaggaagtga  2118200                                                                <--------P                   --------                                                     --------->ANAC58                     --------->YAB1                                  --------->At4g35610--------->ANAC46                    <---------YAB1                       <----------DOF2            <------ZmHOX2a(2)                    --------->YAB1                   <-----------GT1<---------At4g35610--------->ANAC58                 --------->ICU4>   agaagacgagagatagagaagaaacctttctgtttcatcagaaaaatggacgatcaagctactctggtagaagacacagacaaacacgatgatgataaag  2118300                                                                        <---------bZIP60(2)                                                                      <-----------HVH21                                                                      --------->REM1(2)                                                                     --------->ALFIN1                                                                    <-------MYC2                                                                   <---------ANAC58                                                                 <---------ANAC58                                                                 <---------ANAC46                                                 <---------DAG2  <---------ANAC58                               --------->LBD16 <---------------AGL15------->MYC2                             <---------LBD16   --------------->AGL15<-------MYC3                            --------->MYB52(1)<-----------------AG <---------ANAC58                          =======================HOX2a_HOX2a    --------->ABI4(2)                          ================HOX2a_HOX2a           <---------ZAT18                          <------ZmHOX2a(2)   <-----------------AGL1------->MYC3                         <-----------HVH21  <---------GLK1(1)  --------->ALFIN1                  <---------GLK1(1)       <------ZmHOX2a(1)   <---------MYB52(1)                  --------->GLK1(1)    <-----------RAV1(2) <---------LBD16                 <---------ARR14(2) --------->ARR14(2)   <---------ARR14(2)                 --------->ARR14(2) <---------ARR14(2)   --------->ARR14(2)                  <------- -->DOF2        <------ZmHOX2a(1)  <------ZmHOX2a(1)    <---------GLK1(1)                <-------TEIL >>>>>>>>TBF1   =================HOX2a_HOX2a--------->GLK1(1)--------->LBD16           --------->YAB1   aagaagaagacttgtgcaggatttgccgatcaccggaggaaccaggaaaccccttatggtatccggtgcgcgtgtcgaggctccatcaatgttcatcaag  2118400                                 --------->ANAC46                                 --------->ANAC58                                 --------->ANAC58                                                <---                             --------->CCA1(2)                                     <---------ANAC58                        --------->LBD16                                            <---------ANAC58                        <---------LBD16                                           <-------TEIL <-----                        <---------At4g35610                                      --------->GLK1(2)                      <---------LBD16                                            --------->ARR14(2)        --------->ARR11(3)  <---------ARR14(2)     <-----------GT1               <---------ARR14(2) <        --------->ARR14(2)  --------->ARR14(2)  <---------YAB1        ---------->DOF2          <-----        <---------ARR14(2)--------->LBD16  ----------->GT1   <----------DOF2     --------->ARR11(3) - --ICU4<---------CCA1(2)------>NtERF2 --------->ALFIN1       <---------DAG2   <---------TOE2(3)<-----   actgtcttcatatctggctcaatctccgcggatacaagcagtgcgaggttattatacaaacctctttttctctaaagaatgaggttcttgttctatagcg  2118500  ----------->HVH21 ------MYB52(1) ----ANAC58 ---------ANAC55(2)                                              <-----------GT1 ----ZAT6  <---------ANAC58                             ---------->DOF2 -------->ANAC55(2)                                   <---------YAB1 ----ANAC58<---------ANAC58                       <---------GLK1(2)              <---------YAB1<-----   ttatgtgacaatttcgttttcgattaaacttcaatttctgcgattttagaaagaatatcaaagttatttactagtattttgttatgagtgatgtttttgg  2118600                                                                                  ------>MYB46(1)                                                                                  ------>MYB83                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                             --------->ANAC46   <---------YAB1          <-----------GT1                                   --------->ANAC58  <---------AHL20(1)     <---------GLK1(1)                                   --------->ANAC58  <---------AHL20(2)     <---------HSFB2a(1)  <---------ANAC58             <---------ALFIN1  --------->AHL20(1)     --------->GLK1(1)    <---------ANAC46       --------->GLK1(2) ----LBD16       --------->ALFIN1             <---------ANAC58      <---------GLK1(2)   ggattatatttgtgtcatggtgttgggattttcgatttcttctctgtttcttgtaatatgggtttaagaagaatctcgcacaccaaatgtttgatgaaat  2118700  Previous    Next  AGI:  At3g06700.1    Description:  60S ribosomal protein L29 (RPL29A). Identical to 60S ribosomal protein L29-1 (RPL29A) [Arabidopsis Thaliana] (GB:Q9M7X7); similar to 60S ribosomal protein L29 (RPL29B) [Arabidopsis thaliana] (TAIR:AT3G06680.1); similar to 60S ribosomal protein L29 (RPL29B) [Arabidopsis thaliana] (TAIR:AT3G06680.2); similar to ribosomal protein L29 [Panax ginseng] (GB:BAA96072.1); contains InterPro domain Ribosomal protein L29e; (InterPro:IPR002673) Range:  from: 2117353    to: 2118013    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06710.1    Description:  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G32670.1); contains domain PTHR13145 (PTHR13145) Range:  from: 2118175    to: 2120065    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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