Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ----------->GT1                                                                     ---------->DOF2                                        --------->AHL20(2)          --------->AHL20(2)       <-------        <----------DOF2                 <---------AHL20(2)          <---------AHL20(2)    <---------AHL20(1) --------->ZAT6                        --------->AHL20(2)       --------->AHL20(2)        <---------ARR11(3) ----------GT1                   --------->AtLEC2               <---------AHL20(2)        --------->AHL20(1) ----->AHL20(2)                  --------->ANAC58              <---------AHL20(1)         --------->ARR11(3) ------AHL20(2)                  --------->ANAC58              <---------AHL20(2)        <---------AHL20(2) ->AHL20(2)                --------->ARR11(3)     <-------MYC3 --------->AHL20(2)   >>>>>>>>>GATA-1 -YAB1 --------->TOE2(3)   <---------ARR11(3)     ------->MYC3 --------->AHL20(1) ----------->GT1 <--   taaacactacctttacccattggataaaacatctcatgcaaatttataaacatgtgtttcttaaataaaattaaagtgtgaatatagataaatatttttt  2102000                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)                                                                     <---------AHL20(1)                                                                     --------->AHL20(1)    <---------YAB1                                                  <---------AHL20(2)       --------  <---------ICU4               --------->At4g35610             ------>ZmHOX2a(1)    ---------->DOF2  --------->YAB1      --------->YAB1                          --------->TOE1(3)    --------->YAB1 <---------ATHB12 --------->AHL20(2)                          --------->TOE2(3)<---------AHL20(2) --------->ICU4   <---------AHL20(2)                       <-----------GT1 <---------YAB1    -------- --AHL20(2)   <---------AHL20(2)--------->TOE2(3)  --------->At4g35610  <---------AHL20(1)   <------- -------AHL20(2) --------->AHL20(2)   <---------ICU4--------->TOE2(3)--------->AHL20(2)   --------->WOX13(1)   ttaatcatgagtttcttaaatttataaaaacttagcttaattatctcttaattagcttaattttccttaaatattttatttttaatcaaagtcaattata  2102100                                                                                           <---------At4g35610                                                                                     <------MYB46(1)          ------>MYB83                     --------->DEAR3(2)                       --------->MYB59          ------>MYB46(1)                 ------->TEIL                              <---------AtMYB61        --------->DEAR3(1)            --------->TOE1(3)                         <------MYB83       --------->DEAR3(2)             --------->TOE2(3)                  --------->ANAC55(2)      ------->TEIL                   ----------->RAV1(2)                 <---------ANAC55(2) ->YAB1--------->MYB46(3)      --------->AHL20(2)                   <---------GLK1(1)<------MYB83 ->AHL20(2)      ----------->GT1   <-----------GT1            ----------->GT1   <------MYB46(1) --AHL20(2)    ---------->DOF2 --------->ATHB51           <---------GLK1(1) <---------ARR14(2)   taggtctgaaccgactagaaagtagaaactgaataatttacctgaaccgaagtctaatagaaatcggtagaaatcacatatttggtttggtttagctcat  2102200                <---------ICU4                ------->GAMYB                             ---------->DOF2                --------->ATHB12            -------->P                               ----------->RAV1(1)                -------->HAHB4              >>>>>>>>>MYB98                           ------>NtERF2                <--------ATHB1              ------>MYB46(1)                         <---------ETT(1)                <------------ATHB5          ------>MYB83                            --------->LBD16               <---------ATHB51            <---------ALFIN1                         --------->ANAC46               --------->ICU4 <---------AHL20(2)                                  ------->GAMYB               <---------AHL20(2)         <---------ALFIN1                      -------->P               --------->AHL20(2)      --------->ZAT18                         ------->GAMYB      ------->TEIL            --------->AHL20(2)                              --------->MYB46(3)   <---------ANAC58           --------->AHL20(1)                              <---------MYB55(2)   <---------ANAC58           <---------AHL20(1)                           <---------WRKY38(1) <-----------GT1--------->ATHB51 <---------AHL20(2)         <-----------HVH21 <---------MYB111(2)   gttttacgagccttgaaataattgggccttaatattttaagggcccaacccaaacgctgaatcgtcgctcgtcttagtcaacaaccccgacaaagaaacg  2102300                               <------NtERF2                             --------->ANAC58                             --------->ANAC58                             <---------DEAR3(1)             ----------->GT1                      <-----------GT1                      ------------------------>ANAC81                    <---------AHL20(2)           --------->LBD16                <---------CCA1(1)               --------->ANAC58                <---------RVE1(1)               ----------->GT1               <---------ARR11(3) --------->ANAC58         --------->DAG2      ----------------------               --------->ARR11(3) --------->ANAC58       ---------->DOF2      --------->DAG2            <------NtERF2   --------->SPL7   --------->ARR14(2)     ----------->GT1           --------->LBD16----------->HVH21  <---------ARR14(2)     <----------ID1      ----------->GT1          --------->DEAR3(1)--------->RAP2.6(3) --------->ANAC58  ---------->DOF2     ----------->GT1         <---------LBD16--------->ANAC46     ------------------------>ANAC81 ---------->DOF2   ------   atgagcgtttcgccggagatatttaaacgggacggcatggaagtgaagacccgaaaaaaaaaaggcaaaaaagaaaaaaaaaagggaagagagaaaatca  2102400                                                                                                   <<                                                                                                <<<<<                                                                                             <<<<<<<<                                                                                           <xxxxxxxxx                                                                                          <<<<<<<<<TBF1                                                            --------->ARR14(2)          <xxxxxxxxxxxx                 <---------GLK1(2)                   ---------->DOF2                   <<<<<<<<<TBF1<        *TSS     --------->ARR11(3)           <-----------HVH21                      <xxxxxxxxxxxxxxx        <------ZmHOX2a(1)                    --------->ANAC46                       <<<<<<<<<TBF1<xxx -->ANAC81       <---------ARR11(3)       <---------At5g28300   ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxx --->YAB1    ---------->DOF2             <-----------GT1    <---------ARR14(2)   <<<<<<<<<TBF1<xxxxxx   gaaaaatggaggagataaagattttgggacatctcttccacatttacccttcacttaaagccaatcctctctcgagagacttcttcttcttcttcttctt  2102500              <<<<<<<<<TBF1           <<<<<<<<<TBF1        <<<<<<<<<TBF1     <<<<<<<<<TBF1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <<<<<<<<<TBF1  <<<<<<<<<TBF1 <<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  -- <<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <-- <TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       --- xxxxxxxxxxxxxxsmallRNA(se3)                                                                      --- xxxxxxxxxxxsmallRNA(se3) <<<<<<<<<TBF1                                                          ---- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            ---- xxxxxxxxsmallRNA(se3) <<<<<<<<<TBF1                                                            ----- xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <<<<<<<<<TBF1           ------ xxxxxsmallRNA(se3) <<<<<<<<<TBF1                                  ------>ZmHOX2a(1)           <----- xxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------MYB52(1) <-----------GT1           <----------DOF2-   cttcttcttcttcttcttcttcttcttcttcttctcaactccattatctaattctagggtttttctctccttcttcttcgcacttctctttctctctccc  2102600 <---------MYB52(1) ------->DEAR3(1) ----NtERF2 ------>RAP2.3(1) ------>DEAR4(2)                                                                                    < -->NtERF2                                                                                       <--- ----->LBD16                               --------->GLK1(2)               --------->ARR14(2)    <--- ---->ANAC46          <<<<<<<<<<<<<<<<<LFY<---------GLK1(2)           --------->MYB52(1)    <-------- --->MYB46(3)      --------->ANAC46 <---------ZAT6                 --------->TOE2(3)       --------->ICU4 ----LBD16  <----------DOF2   <---------ZAT6                    <---------GLK1(1)     --------->ANAC58 ----->NtERF2     --------->LBD16 <---------At5g28300           --------->GLK1(1)     --------->ANAC58   gccgcttgtttcttctttccctcgaaacactggtgttactgtgagattctcgtttgaatttaggggatttcttaacgaattcactgagaagcactaattg  2102700                                                       <---------YAB1                                                     <---------GLK1(1)                                                    <---------ARR11(3)   --------->ALFIN1   <---------ANAC46              --------->ARR11(3)                    <----------DOF2 ---------AtMYB61<------MYB46(1)                   <<<<<<<<<RAP2.2                       <---------ANAC58 ------ANAC58    <------MYB83               <---------TOE2(3)              <---------ANAC58 ------ANAC58  --------->ALFIN1          <----------DOF2                   <---------ANAC58 -ICU4<---------MYB46(3)              <---------MYB52(1)           <---------ANAC46      <---------ANAC58   cgaaggtgttgttagaggtgggtttagtgtatgcttattcgttctttaggtttagatatcattctacttgagtagatgcttgatggttttggcttctctg  2102800                                                                                  <---------AtLEC2                                                                                 <-------TEIL          <---------ANAC46                                                   --------->DAG2        <-  --------->TOE2(3)                                       <---------YAB1    ---------->DOF2    ------   gtttcattagttttgtgtcaattttgagaatgctatgtctaattcaattttgagaatgctatgactaattcaatttgagaaagtgcatgtagttcaattt  2102900  Previous    Next  AGI:  At3g06660.1    Description:  PAPA-1-like family protein / zinc finger (HIT type) family protein. similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT2G47350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44904.1); contains InterPro domain Zinc finger, HIT-type (InterPro:IPR007529); contains InterPro domain PAPA-1-like conserved region (InterPro:IPR006880) Range:  from: 2102408    to: 2104912    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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