Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <-------TEIL        ---------                          --------------->AGL15                   <-----------RAV1(2)     <---------ARR11(3)                      <---------WOX13(1)                       --------->ANAC58  <---------AHL20(2)                   <---------AHL20(2)                          --------->ANAC46 --------->AHL20(1)                   <---------YAB1                              --------->ANAC58 <---------AHL20(2)                  --------->AHL20(2)                         --------->CCA1(2)  <---------AHL20(1)                  <---------AHL20(2)            --------->At4g35610  <------ZmHOX2a(1)    --------->ARR11(3)             <---------ATHB12         --------->YAB1        --------->ARR11(1)  --------->AHL20(2)  -   cagtgtttagaatcactcattttaattgccatgttcagaatcacaatctcatcagaaaaaatgatacgccaggatgcataaataaaatttgaaatcttat  2044000                                                                --------->YAB1                                                       --------->YAB1   <-----------GT1                                                       <---------ICU4   <---------YAB1       --------    ------------------------>ANAC81                 --------->YAB1    --------->YAB1    <---------ATHB12  ----------->GT1       <------ZmHOX2a(2)          <---------YAB1    <---------YAB1   --------->WOX13(1) >TOE2(3)   --------->MYB52(1)    <-------TEIL   --------->YAB1 <---------ICU4      <---------ATHB12 --------->DOF2         <---------YAB1 <---------AHL20(2)    --------->YAB1     ------>ZmHOX2a(2) ---   tcgaaagaaaaaaaaaacagaaaacgatcattcacatacattttttttgttttataatcagtataatcagtattatacttgatcgaatcaatgaagaaag  2044100                                                           ------>ZmHOX2a(1)                                                        ------>MYB83                                             --------->HSFB2a(2)                      <---------ZAT6         <---------HSFB2a(2)                              <------                    --------->MYB52(2) --------------->AtSPL8                               <-------- -->DOF2--------->AHL20(2)        <---------AHL20(2)    ------>MYB46(1)           <---------AHL20(2) -------->GT1   <---------ZAT6  <---------YAB1     <-----------GT1               --------->AHL20(2)<-   tcgttaaaaaaaaaatcagtgttagtggaagattatttttttttgttccataaaaaccatcctttgaaaacagaaattttcgataaaatttcaatttatc  2044200                                                                                                  <--                                                                                                  <--                                                                                        --------->ATHB51                                                                                        <---------AHL20(2)                                                                                        <---------ICU4                                                                                        <--------ATHB1                                                                                        --------->AHL20(2)                                                                                       <---------ATHB12                                                                                       <---------ATHB51                                                                                   ------------>CBF                                                                                 --------->bZIP60(2)                                                                        <---------ANAC55(2)       ---                              <---------ICU4                            --------->ANAC55(2)    ------                             --------->ICU4                      ----------->GT1 --------->ANAC46 ---                           --------->YAB1 ---------->DOF2       --------->DAG2   --------->ANAC58<---                          <---------YAB1  =================================================bZIP_DOF                          <---------AHL20(2)                   ---------->DOF2   --------->O2<------MYB46(1)       <---------GLK1(2) --------->AHL20(1)             --------->AHL20(2)       <---------O2<------MYB83 -----GT1                <---------AHL20(1)             <---------AHL20(2)       --------->TGA1a<---- -AHL20(2)               --------->AHL20(2)--------->DAG2      ============================bZIP_DOF-- ---------DOF2   ----------->GT1    ----------->GT1    --------->AHL20(2)        --------->ANAC58<---   tctttttcagattataaactagaaaaatataataagtagagaaataaagctatactattaaaaaaaaaagtaatacatattccacgtcaataatttggtg  2044300        <------------CBF    <---------ARR11(1) -------PCF5 -------PCF2                ------------>CBF ------>TCP15(1)          <---------TOE1(3) --->ALFIN1               <---------TOE2(3) ------>TCP20         <----------DOF2                                                            <--- ------TCP15(2) --------->At4g35610                                      ----------->ARR10   <------- -----MYB46(3)--------->ZAT18                                --------->ATERF1(1)            <-------- ---->NtERF2  <---------ZAT14                             *TSS       --------->At4g35610    <-------- ---NtERF2<-----------RAV1(1)   --------->ICU4        ---------->DOF2<---------At4g35610  <----------   gggccaaatctattgctgcgctggatttaaggcaatttttagttcgaagttcaaaacaaaggcgaaggcgaagcggagagactccaccaattttgctttc  2044400                                                           --------->ALFIN1                                                         <------MYB83                     <------NtERF2                                                         --------->ZAT2                  ------>NtERF2                                                         <---------ZAT2                  --------->LBD16                                                        --------->MYB111(2)             --------->ANAC46                         ---------->DOF2                --------->ALFIN1         ------>ZmHOX2a(1)                  --------->HSFB2a(2)              --------->DAG2                <---------DAG2                  <---------HSFB2a(2)          --------->YAB1          <---------TOE1(3)--------->LBD16 -------DOF2     <---------LBD16              <---------ATHB12         <---------TOE2(3)<---------LBD16 ---DOF2        <---------LBD16         --------->LBD16 <---------DEAR3(1)       <----------DOF2 -ANAC58  <---------GLK1(2)             ------>ZmHOX2a(1)<------MYB46(1)      ---------->ID1  <------ -ANAC58  <---------ARR11(3)           <---------LBD16  <---------AtMYB61 <--------P    <---------ETT(1) -GT1     --------->ARR11(3)   ----------->HVH21  ---------->DOF2    ---------->DOF2   <---------LBD16   tttttcttcaaagattttctcgggaaacaaagtctgacattcctggcaatgaaaaagggaggtgggagaaataaaggttagtcctttttcccggcaaatt  2044500                                                                  <---------ANAC58                                                                  <---------ANAC58                                                           <------NtERF2                                                           <---------MYB52(1)                                                          <-----------TGA1                                                          <-----------HVH21                                                          ------>NtERF2                                                         --------->bZIP60(1)                                                         --------->RAP2.6(2)                                                         <---------bZIP60(1)                                                         --------->DEAR3(1)                                                         --------->RAP2.3(3)                                                        --------->RAP2.3(1)            --------->LBD16         <------NtERF2     --------->DEAR3(1)           <---------ANAC58       <---------ANAC46    --------->ANAC46           <---------ANAC58  --------->MYB52(1)    <---------WRKY12           <---------ANAC55(1)   <---------LBD16   <---------WRKY45           --------->ANAC55(2)  ------->GAMYB      <---------WRKY38(1)       <----------DOF2  <---------ANAC46    <---------YAB1<---------RAP2.6(3) <-------MYC3       <--- <----------DOF2     <---------MYB52(1)  <---------YAB1------->GAMYB          ------->MYC3       ==== ---GLK1(2)<---------ANAC46 ----------->HVH21    <-----------HVH21<---------ANAC46          <--------   cttctttctctttccgtgttttcgttttgtgtaacggcggattatgctaattgtcaacgccgtcactgccttggattccacgttttatttcgataaaccc  2044600                                  <---------ARR14(2)                            ----------->HVH21                           <-----------HVH21                          <---------ANAC55(2)                          --------->ANAC58                          --------->TGA1a                          <---------TGA1a                          <---------O2                          --------->O2                          --------->ANAC55(2)                                                     ---                          --------->ANAC55(1)                                                     <--                          --------->ANAC46                                                        <--              ------>ZmHOX2a(2)   --------->ARR14(2)                                              ---              ================HOX2a_HOX2a                                                         ---             =================HOX2a_HOX2a                                                   <--------             <------ZmHOX2a(2) <---------ANAC55(2)                                          <--------            <---------ARR11(3) <---------RAP2.6(2)                                          ---------            --------->ARR14(2) --------->ANAC55(2)                                          ---------            <---------ARR14(2)--------->RAP2.6(3)                ----------->TGA1         <----------          --------->LBD16 --------->ANAC58           <---------GLK1(1)                   <---------MYB52(1) -------DOF2<---------GLK1(2)--------->MYB52(1)   <---------TOE2(2)                     <-----------HVH21 ===================================bZIP_DOF      <---------TOE1(2)             ------>ZmHOX2a(2) <-- ---GT1 <---------LBD16------>ZmHOX2a(1)         --------->STY1(1)    ---------->DOF2   <-----------TGA1   tttctcccttgccggatccttgttcctcacgttacggctctggtcttgtccctaggtttccctcaagatgacgaaagctcgatctcgcttcgtcaggtaa  2044700    <---------TOE1(3)    <---------TOE2(3) ------>AHL20(2) -------AHL20(1)                                                                     <---------TOE2(3) -------AHL20(2)                                                                 <-------GAMYB ------>AHL20(1)                                                                <---------MYB46(3) ------>ARR11(3)                                              --------->YAB1----------->HVH21 -At4g35610                                                <----------DOF2<---------ZAT2 -ANAC55(2)                                            <----------DOF2    --------->At4g35610 -->GT1                                             <-----------GT1       <---------At4g35610 >ANAC55(2)                   <------ZmHOX2a(1)  <---------GLK1(1)    <---------ANAC58 -RAV1(2)  <-----------GT1  <---------TOE2(3)   <---------ARR11(3)    <---------ANAC58 -------ARR11(3)   --------->TOE2(3)            --------->ARR11(3)    <---------ANAC46     <------ZmHOX2a(1)   tatattagggtttttactcattctcaatttaaggacttaaaaaaaaccaagatttcactttctttcaaaatttcgtagctgatggttaatgaaggactca  2044800                                                       <-------TEIL                                                    ----------->GT1                                                 ---------->DOF2                                               --------->ANAC58                                               --------->ANAC58                                           <---------At4g35610                --------->MYB111(1)                                           --------->At4g35610                <---------MYB46(3)                --------->At4g35610        --------->ZAT2              <---------ANAC58                ----------->GT1         <---------ATHB12               <---------ANAC46                <---------ANAC46      --------->WOX13(1)       <---------MYB52(1)     ----------->GT1  <---------CCA1(2)                 <---------YAB1 --------->DAG2      <---------ANAC58    <---------YAB1   ttccatctcttgaagatgaggtgaaacgaagaggtgttatcaatcagctacgaaaggtacattcagttttgtttcttgagtagttggacagtgattactg  2044900  Previous    Next  AGI:  At3g06560.1    Description:  polynucleotide adenylyltransferase/ protein binding. similar to nPAP (NUCLEAR POLY(A) POLYMERASE) [Arabidopsis thaliana] (TAIR:AT4G32850.9); similar to nPAP (NUCLEAR POLY(A) POLYMERASE) [Arabidopsis thaliana] (TAIR:AT4G32850.10); similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to hypothetical protein [Vitis vinifera] (GB:CAN79659.1); contains InterPro domain Poly(A) polymerase (InterPro:IPR014492); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contai Range:  from: 2044358    to: 2047215    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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