Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ANAC58                                 <---------ANAC55(2)                                -----------------                                 <---------ANAC58                                   <----------------                                 <---------ANAC46                                   <----------------                                <-------TEIL                                  --------->DAG2                               <---------ANAC46                          --------->HSFB2a(2)                             <------MYB46(1)                        --------->MYB52(2)                             <---------MYB46(3)                  <-----------HVH21  -----------------                         <---------MYB46(3)                 <---------ALFIN1---------->DOF2                         --------->MYB111(2)            <-----------HVH21<---------HSFB2a(2)   <-----                    ---------->DOF2             --------->DEAR3(1)<---------MYB52(1)-----------------        --------->MYB52(1)   <------MYB83     --------->MYB52(1)--------->ANAC46    <----------------   acagagcatgaaacggactctgcaaagttgttggtgcgtaaacaaactcaccggcttcagtcacacccgttagttctaaaaaggtgtccaaaattggatc  1898400 <---------ANAC46 >AGL3                                  <---------CCA1(2) -AGL3                                 ------->TEIL                                                -- -AGL2                              --------->ANAC46                                               -- >AGL2   ----------->GT1            --------->ANAC58                       ---------->DOF2     ------ -ZmHOX2a(2) ---------->DOF2        --------->ANAC58     --------->HSFB2a(2)             <---------TOE2(2) >AGL1  --------->DAG2            <---------ALFIN1       <---------HSFB2a(2)     <----------DOF2 <XXX -AGL1 ---------->DOF2        --------->MYB46(3)       ------>ZmHOX2a(1)   --------->MYB52(1)  <-----   atcgagtggaaaagttaaagaaaatgttctaaacgaccacgcatgtctctctgcatcctccagaacccatagtgaaataaaggctttcacataggttgca  1898500                                                       --------->LBD16         --------->At4g35610                         <---------LBD16            --------->YAB1        --------->GLK1(2)                            ----------->RAV1(2)       <-------TEIL ------->ANAC58                                  <----------DOF2<------ZmHOX2a(2)         --------->ARR14(2) ------->ANAC58                                 <---------HSFC1(2)           --------->ARR14(2) --->HSFB2a(2)           <---------TOE1(2)      --------->HSFB2a(1)          <---------GLK1(2)   <--- XXXXXXXXXXXXXXXXXMIR413 <---------TOE2(2)      <---------HSFB2a(1)          <---------ARR14(2) <---- ----HSFB2a(2) <----------DOF2                  --------->HSFC1(2)     <-----------GT1    <---------ARR14(2)   gaagcaagagaagctaactttccctcgtaagttaagaggtaaccttgggaactttccctgagcacgatcaaattcaccagattcataatacagaaccccg  1898600                                                                                                    <                                                                                                   <-            --------->ANAC46               --------------------->WRI1      >>>>>>>>>>>>>>>>>LFY   <--            --------->O2                   --------->TOE2(3)         <---------At4g35610         <---    ------->TEIL                         -------->P                 <-----------GT1              <--- ------MYB52(1)                    ---------->DOF2                 <-----------GT1               <--- ---GAMYB   <---------O2      --------->ICU4                 <---------ARR11(3)            --------->LBD16   ttgatgcatcgtccacgagggtagtaagggcaatgttcaaagctaccttggataaatctccatgattttttagctcttcccaatgtaagaacccgaggct  1898700      <----------DOF2      <---------DAG2 <---------At4g35610 --------->At4g35610 ---------MYB46(3)                                                                                  - -------P                                                                                           - -----GAMYB                                                                  ------>ZmHOX2a(1)    <-- ---MYB83                                                                <-----------GT1          <-- ---MYB46(1)  <----------DOF2                                   <---------CCA1(2)         <---------MYB52(1) ------MYB46(3)   ---------->ID1     <<<<<<<<<TBF1    --------->YAB1<----------DOF2 ------>ZmHOX2a(1)   ggttgctgctttttgtctttgtcttctcttcacatcttcttcttcttgtttctccatcatcaaaccctatctttttctccttcttcctctctgttagatt  1898800                                                                    --------->ATHB12                                                                   --------->ICU4                                                                 <---------ICU4                                                                 --------->YAB1   --------->ARR14(2)                                          <---------AHL20(2)   --------->GLK1(2)                                          --------->YAB1   ------->TEIL                                              ----------->TBP   <---------ARR14(2)                                        <---------YAB1   <---------ARR11(1)                                      --------->YAB1  <---------CCA1(2)                                        --------->AHL20(2)  <---------ARR14(1)                                      <---------YAB1 -------->ANAC55(2)                                       --------->ICU4       --------->ANAC58 -------->ANAC46                                        <---------ICU4         --------->ANAC58 -------ANAC55(2)<---------TOE1(3)                     --------->ICU4       ----------->HVH21      <- -------ANAC46   <---------TOE2(3)                   ----------->GT1-------->HAHB4           <------NtERF2   acgcgtatctatagggtttagggttttagacaagaagtttttcatgttaacttggtagtaattataaaaatgatgggtctcacgcgctcgctggaggcat  1898900                                                    ------>NtERF2                                                   --------->DEAR3(1)                                                  <------NtERF2                                                 ------>NtERF2                                                --------->ANAC46                                              --------->ANAC58                                              --------->ANAC58                                              --------->ANAC46                                            <---------DOF5.7(2)                                    --                                          --------->DOF5.7(2)  <---------ZAT6              <---------ICU4                --------->YAB1          <---------ANAC58       --------->ALFIN1           --------->ICU4                --------->ANAC55(2)     <---------ANAC46   <---------ANAC58             --------->YAB1    <-----------GT1    <---------ANAC55(2)<-----------HVH21<---------ANAC58          ----------->GT1 ---------DOF2  --------->ANAC46        <---------ANAC58 --------->ALFIN1     --------->ZAT6      ---   gctttatttcttctctatacataatacataagtgtatgggtttcgttcacgcgccgagagtgcgagtgttggaacatataagactagtagtaataatgta  1899000                                            ------->MYC4                                            ------->MYC2                                            <-------MYC3                                            <-------MYC4                                            ------->MYC3                                           <--------ABF1                                           <---------ANAC46                                           <---------TGA1a                                           --------->TGA1a                                           <---------O2                                           --------->ANAC55(2)                                      --------->bZIP60(1)                                      <---------bZIP60(1)                                    --------->YAB1            --------->ARR11(3)                                    <---------ICU4    --------->ANAC58                          <----                             ------>MYB83  --------->O2      <-----------GT1                    -----                             --------->MYB52(1) <---------ANAC46                              -------           ----------->GT1   ------>MYB46(1)<-------MYC2     --------->RVE1(1)            --------->REM1(1)          --------------->AtSPL3   <---------YAB1     ----------->GT1                     --------->MYB46(3)          <---------------AtSPL8   --------->ICU4     --------->ANAC58               --------->ANAC58         <---------ZAT14   <---------MYB111(1) --------->ALFIN1                      --------->ANAC46         --------->ZAT14   <---------MYB46(2)--------->ALFIN1--------->CCA1(1)       --------->AtLEC2   <-----------HVH21       <---------MYB111(2)--------->REM1(2)     <----------DOF2  --------->ANAC58 ------->MYB52(1)          <---------MYB59 <---------ANAC55(2)<---------ARR11(3)----------->HVH21---- ------>ICU4              --------->ANAC46 ====================================bZIP_DOF ----------->RAV1(1)   ctaatggtcagtgaagtacaaaacttctaccaaactgatgatgacacgtgtaggggaagcaaaataccttctttgacaaaaactgacatgcaacaacaac  1899100         ---------->DOF2 --------->TOE1(3) --------->TOE2(3)            ----------->GT1 -----MYB52(2)  ----------->TGA1--------->AHL20(2) ---->MYB46(3)  ----------->HVH21                                       <-----------GT1 ---->RAV1(1) --------->At4g35610                            --------------->AtSPL8         <-------- --->GAMYB--------->DAG2  --------->YAB1    <----------DOF2--------->GLK1(2)         <---------ATHB12   aaacattaacaaaaagggctgacgaaaatcagaagtaaatacagagcttctcggctatgctattctgtaccatgttacatttttccaacaattcatctaa  1899200                                                                                                    <                                                                                                   --                                                                                                  ---                                                                                             --------                                                <----------DOF2                             <--------                                     ------>NtERF2                     <---------MYB46(2) --------->YAB1                                     <---------At4g35610        ============================HOX2a_HOX2a                                  ------>NtERF2--------->TOE2(3)------>ZmHOX2a(2)    ------>ZmHOX2a(1)                                  <---------At4g35610         --------->ARR11(3)     ================ -At4g35610                      <-----------RAV1(1)          <---------ARR11(3)    --------->TOE2(3)   tctctcactctctctcttctctatcgtcttcttctctgccgcttctctacctttacttctccatgatctctcgcctaactcatcatcctcagttatcatc  1899300  Previous    Next  AGI:  At3g06280.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47730.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187) Range:  from: 1898161    to: 1898757    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06290.1    Description:  similar to SAC3/GANP family protein [Arabidopsis thaliana] (TAIR:AT3G54380.1); similar to hypothetical protein OsJ_024356 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40873.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71065.1); similar to hypothetical protein OsI_026146 [Oryza sativa (indica cultivar-group)] (GB:EAZ04914.1); contains InterPro domain SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062) Range:  from: 1899048    to: 1907303    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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