Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->LBD16                                                                           <---------HSFB2a(2)                                                                           <---------LBD16                                                                           --------->HSFB2a(2)                                                                       --------->GLK1(1)                                                                       <---------GLK1(1)                                                                      <---------ARR14(2)    <------NtERF2           ---------->DOF2                  ------>ZmHOX2a(2)  <---------YAB1              --------->LBD16        ------->TEIL                      <---------ARR14(2)--------->ARR11(3)             ------>NtERF2      <-------TEIL    <---------AtMYB61   --------->ARR14(2)<---------ARR11(3) ----------->GT1    <-- --------->DOF2  <------MYB46(1)         <------ZmHOX2a(1) --------->YAB1 <---------LBD16<---------LBD16 ---ZmHOX2a(2)   <------MYB83 <---------ALFIN1  --------->At4g35610   --------->ARR14(2)--------->MYB52(1) -----ARR11(3)  --------->MYB59      ---------->DOF2      <---------YAB1<---------ARR14(2)--------->LBD16   tcaaaagatgcaccaaagtaggttttggtctaccacttgtaaaggatcggagatgaagtgatgatattagtggatttccgggagtaaaactcccggcgag  1886600                                                           <---------MYB52(1)                                                         <---------ANAC58                     ------>ZmHOX2a(2)                   --------->HSFB2a(2)                    --------->At4g35610                  <---------ANAC55(2)                    --------->CCA1(2)                    <---------ANAC58                    <------ZmHOX2a(2)                    <---------HSFB2a(2)                   <---------ARR11(3)                 <---------ARR14(2)                   --------->ARR11(3)                 --------->ARR14(2)                   <---------ARR14(3)              <---------ANAC58                   --------->ARR14(2)              <---------ANAC58                              <---                   <---------ARR14(2)              --------->ANAC55(2)                           ====                   <---------AGP1                 <---------TOE2(3)  ------>ZmHOX2a(2)          <----                   --------->AGP1         <---------ANAC46--------->LBD16                       -----                  <---------GLK1(1)    <---------MYB52(1)--------->ANAC55(2)                ---------         <---------ALFIN1             ----------------------->TaNAC69(2)                  --------->ANAC58     --------->GLK1(1)      ----------->GT1   <----------DOF2      <---------ARR11(3)     --------->ANAC58 -------REM1(1)   --------->GLK1(1) <-------TEIL <-----------GT1   --------->ARR11(3)   --------->MYB52(1)   atgtagggtctccacattggagatctgaactcgttaaattcgttgtgtcttttacgtttccgtaagcttgatcttgatcatatatatcacaaacgaaaga  1886700                                                                                                    -                                                                                                    -             <---------ANAC58       ---------->DOF2                                               <--             <---------ANAC58   --------->ZAT18                                                   <--           --------->CCA1(2)    <---------ZAT18                                 ----------->GT1  ----      <------ZmHOX2a(1)         --------->ZAT14                               ---------->DOF2  <----- ---ZmHOX2a(2)                  <---------ZAT14                           ---------->DOF2  --------->AHL20(2) ============HOX2a_HOX2a       ----------->GT1    <---------LBD16<---------ANAC58         <---------YAB1 -----ARR11(3)          --------->TOE1(2)      ----------------------->TaNAC69(2)       --------->YAB1 ---->ARR11(3)         --------->YAB1 ---------->DOF2            <---------ANAC46       <---------ICU4 ->DOF2  <---------HSFB2a(1)  <---------------AtSPL8             <---------ANAC58      <---------ATHB12   tcgagacaggaagatgcgaggctaaacatgagagtgtacaaagagcgaatttctcggctactacgtttcttggattcaaagaaagtttaatcataatata  1886800                                                                                           --------->TOE2(3)                                                                                         --------->MYB52(1)                      --------->AHL20(2)                                               <---------MYB111(1)                      <---------AHL20(2)                                               <------------MYB.PH3(2) ----->MYB83         <---------AHL20(2)                   <---------ARR11(3)           <---------MYB52(2) ----->MYB46(1)      --------->AHL20(2)                   --------->ARR11(3)           <---------MYB111(2) -------MYB46(2)     <---------AHL20(1)                  --------->CCA1(1)  <---------TOE1(2) -------MYB59        --------->AHL20(1)         <----------DOF2 --------->ZAT14        <---------MYB59 ----->ANAC46       --------->AHL20(2)  <---------At5g28300     <---------ZAT14        <---------MYB46(2) ------GT1    ----------->GT1          <-----------GT1   --------->RVE1(1) ------>ZmHOX2a(1)   ccaaactagtttaggcctgaaaattaatttagaatatgaagttacagtctctttgagaaatatctgtatagtatttcctatgtgttctaactaacttaaa  1886900                                                     <---------YAB1                                                 <---------WOX13(1)                                               --------->ATHB12                                               <---------ICU4                                              --------->ICU4                     <---------ANAC58         <---------YAB1                     <---------ANAC58       --------->YAB1          <---------TOE1(3)             --------->ICU4                                 <---------YAB1          <---------TOE2(3)          --------->ICU4 <---------TOE2(3)         <---------MYB52(1) ----         <-----------RAV1(2)<----------DOF2<---------YAB1             --------->HSFB2a(2)  <-------TEIL       <-----------HVH21<---------LBD16 <---------YAB1             <----------DOF2  <------ZmHOX2a(2)   <-----------------AGL1 --------->LBD16--------->YAB1           <---------DAG2  <------ZmHOX2a(1)   ctcatacccgttcaggttatgttccttccgcattaacacatgatgatgataattgatgtttgtgatcacctttgggaaccattaggatcaagattcatca  1887000                    <xxxxxxxxxxxxxxxxsmallRNA(s)                   --------->YAB1                                                --------->ARR11(3)        ----------->GT1                                                          <---------ARR11(3)       --------->DAG2  -------->P                *TSS                           <---------CCA1(2)      ---------->DOF2------>ZmHOX2a(1) <------------CBF     --------->YAB1  <---------ANAC46 ------>DOF2 --------->YAB1   --------->AHL20(2)<-----------GT1         <---------GLK1(2)        ----   aaagttggaaaagtaaaataatcctaaccagataaattttggattgaatttttcaaatcaaatcagaatacattgattctgtatatcttattgaaaaatc  1887100                                     <---------AHL20(2)                                     --------->AHL20(2)                                 <---------AHL20(2)                                 --------->AHL20(2)                                --------->AHL20(2)                                <---------AHL20(2)                                <---------AHL20(1)                             --------->YAB1                             --------->ATHB51                             <---------ICU4                             <--------ATHB1                             <--------HAHB4                             -------->HAHB4                            <---------YAB1                            <---------ATHB12        <---------YAB1                            <---------ATHB51     <---------AHL20(2)                                <-                            --------->AHL20(2)   --------->AHL20(2)                               <--                  <---------AHL20(2)<---------AHL20(2)                                   <---------AHL20(2)        --------->TOE2(3)   --------->ICU4----------->GT1                             <---------ARR14(2)     <-----------GT1 <---------CCA1(2)---------->DOF2 ---------->DOF2                 --------->ARR14(2) ----->WOX13(1)  --------->AHL20(2)<---------------AGL15      <---------YAB1      <---------LBD16 ---   catcaatttacatcaacaattttatatctaataattaatttaaagagaaaatttataaaagtttattagagcaaataactcaaactcggattttatagtc  1887200                                                                                        ------>NtERF2                                                                                       <---------ZAT18                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                     --------->At4g35610                                                                                 <-----------HVH21                                                                                <---------ZAT6                                                                            ------>ZmHOX2a(2)     <---------LBD16                                                       <------ZmHOX2a(2) ----------->HVH21                                         ------->GAMYB  --------->ARR14(2)      <-- --------ICU4          ----------->GT1                  --------->MYB52(1)<---------ARR14(2)      <-- -------MYB52(1)    <-----------GT1               --------->YAB1        --------->LBD16--------->ZAT18 ------>ICU4  <---------YAB1   ------->GAMYB      <---------ICU4      <---------LBD16<---------At4g35610   gttatgacccggtttgactattgaaccgtttaaccgagaaattgggactcaattaagacaaccgaaactagacccggatccagtgttagcgggctagatt  1887300              <---------ANAC46                                                  <------NtERF2       <-----------HVH21                                                       ------>NtERF2     <---------MYB46(3)        ------>NtERF2                                  <---------DEAR3(1)    <---------ANAC46          --------->ANAC46                                ----------->HVH21    <---------ANAC58          --------->ANAC58                                --------->DEAR3(1)    <---------ANAC58          --------->ANAC58                                <----------ID1    --------->ETT(1)         --------->SPL7                          <---------ATHB51   <------NtERF2        -------->P------>NtERF2 <------ZmHOX2a(2)    --------->ICU4           <------  <-----------HVH21 --------->ANAC58     ---------->DOF2   --------->ALFIN1  <------NtERF2---------->DOF2 --------->ALFIN1   --------->ANAC58    --------->YAB1     <---------ANAC46  --------->RAP2.3(1) -------TOE2(3)   ---------->DOF2 ----------->RAV1(1)    <-----------RAV1(1) --------->ATERF1(1) -------TOE1(3)--------->LBD16--------->RAP2.6(2)   <---------At4g35610     <---------ATERF1(1)   aaggtgtcgggtcatagcggagaagcaaccagacgccaacaatgaaagcgatccagttgctgtgggaagcgataatggaggcgacgaagagagaaagacg  1887400                    --------->DAG2                   ---------->DOF2              <------NtERF2                                <---------YAB1             ------>NtERF2                               <---------ICU4                         -----            <---------DEAR3(1)                          <------ZmHOX2a(2)            ------>MYB46(1)           --------->ATERF1(1)                          <---------YAB1               ------>MYB83         --------->ETT(2)       --------->ARR14(2)      --------->ICU4              --------->ANAC58      ----------->TGA1        --------->LBD16          --------->ARR11(3)           --------->ANAC46    --------->At4g35610 <-----------HVH21              <---------ARR11(3)           --------->ANAC58 -----------------TaNAC69(2)<---------LBD16           --------->GLK1(1)            --------->MYB46(3)   gagagaagatgacgacggcgaaaaagcttcaccggaatcactcgttcttccaccagagatcattacagaaattcttctccgattaccagccaaatcgatc  1887500  Previous    Next  AGI:  At3g06240.1    Description:  F-box family protein. Identical to F-box/Kelch-repeat protein At3g06240 [Arabidopsis Thaliana] (GB:Q8GXC7;GB:Q9M8J4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45298.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 1887049    to: 1888756    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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