Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->AHL20(2)                                    <---------AHL20(2)                                   --------->YAB1                               <---------AHL20(2)                              <---------AHL20(2)             <---------ICU4       --------->YAB1     <---------AHL20(2)          ----------->GT1      <---------AHL20(2)    <----------DOF2      --------->AHL20(2)         ---------->DOF2        --------->AHL20(2) ----------GT1           <---------AHL20(2)<---------------AGL15        --------->YAB1 -->TEIL              <---------GLK1(2)    --------------->AGL15       <---------YAB1               - ->ANAC55(2)          <---------ARR11(3)  <---------YAB1    <---------ATHB12              --------->YAB1 --ANAC55(2)   ------->TEIL   --------->AHL20(2)---------->DOF2      --------->YAB1      <---------YAB1   tttactctttcataatgtactctagattttaattttataaaaatactatagaaagaaagtaaatcattttcttataattaaacaagaagttatcatacat  1871300                        <<<<<<<ZML2                                           <---------YAB1                     ------>ZmHOX2a(1)                                        <---------AHL20(2)                     <---------HSFB2a(2)                   <---------------AtSPL8                     --------->HSFB2a(2)                   <---------------AtSPL3    --------->AtLEC2            --------->AHL20(2)                             --------------->AtSPL8<---------YAB1         <---------ARR11(3)                       --------->ANAC46           <---------AHL20(1)         <---------GLK1(2)<----------ID1  <---------AHL20(2)              --------->YAB1       <-----         --------->ARR11(3)----------->RAV1(1)  <-----------GT1        <----------DOF2    --------->ICU4 ---------->GT1 <---------CCA1(2)         --------->AHL20(2)           --------->TOE2(3)------->TEIL   aaatgtaattagatttttatatcctagaacaacaaaatgttgatataaatatacaccatagattgtacataaactttaatattattcatgcacttattaa  1871400                                                               <---------AHL20(2)                                                             <---------CCA1(1)                                                             <---------RVE1(1)                                                            <---------GLK1(2)                                                            --------->ARR11(3)                                                      --------->AtLEC2                             <-                                                      --------->ANAC58             --------->AHL20(2)                                                 ------>ZmHOX2a(1)                 <---------AHL20(2)       <---------TOE2(3)                      <---------YAB1<---------ARR11(3)   --------->YAB1   --- ------GT1                          --------->MYB46(3)--------->ANAC58  --------->AHL20(2)     <-----   ctattttctatggtttcaaacaaaactagtctatttcaacaatctcttatcctagcatgcaagattttttttaaaaaaatcaaaaataaatatgtataaa  1871500           --------->AHL20(2)                       <---------AHL20(2)         --------->TOE2(3)                         --------->AHL20(1)         --------->TOE1(3)                  --------->AHL20(2)         <----------DOF2     --------->AHL20(2)    <---------AHL20(1)                               <      <-----------GT1        <---------AHL20(2) <---------AHL20(2)    --------->GLK1(2)        <-----     --------->AHL20(2)      <---------AHL20(1) --------->AHL20(2)   <---------GLK1(1)         <----- --------AHL20(2)        <---------ICU4     <---------AHL20(2)       --------->GLK1(1)         ------ ------>AHL20(2)        --------->ICU4 <---------AHL20(1)       <---------YAB1            <---------MYB52(1) ----AHL20(2)           <---------YAB1 <---------ARR11(3)    <---------MYB52(1)       <---------At5g28300   tttaaaattaactttaaatctaagtgatcattttatttcagtatatttatttatatattttcagttatgagaaatctgtctcccaaattacagttatttt  1871600          --------->LBD16        <---------LBD16    <----------DOF2                                                                           -------   <---------ANAC58                             <-------TEIL                                  *TSS  -   <---------ANAC58                            --------->CCA1(2)                              <------NtERF2 -----------GT1                     <---------AHL20(2)                                   --------->DEAR3(1) ----AHL20(2)                   <---------AHL20(2)               <---------ICU4       <---------ALFIN1 ----AHL20(1)                   --------->AHL20(2)              --------->ICU4    <------NtERF2 <---- --->AHL20(2)     ----------->GT1--------->AHL20(2)   ---------->DOF2      ---------->DOF2  <--------   atttagctttccctgagaaatggttaatgagcaaataaataatgtatagatacatataaagacataataagtatatgtaaaggaggcatcaccgtcgtcg  1871700                                                                                      ------>ZmHOX2a(2)                                                                                      ===============                                                                                      ===============                                                                                      ===============                                                                                     --------->ARR14(1)                                                                                     --------->CCA1(2)                                                                                     ================                                                                                     <------ZmHOX2a(2)                                                                                     ================                                                                                     ================                                                                                    --------->AGP1                                                                                    <---------GLK1(2)                                                                                    --------->ARR14(2)                                                                                    <---------ARR11(3)                                                                                    <---------ARR14(2)                                                                                  ----------->ARR10                                                                                 --------->HSFB2a(2)                                                                                 <---------HSFB2a(2)                                                                            ------>NtERF2                                         --------->KAN4(2)                 --------->DEAR3(1)                                        <---------HSFC1(2)               ====================HOX2a_HOX2a                                        --------->KAN4(1)                <---------ATERF1(1)     ----                                        <---------HSFB2a(1)    ------>NtERF2--------->LBD16     <----                                        <---------KAN4(1)<---------ANAC58===================HOX2a_HOX2a                                        --------->HSFB2a(1)--------->ANAC58<---------ALFIN1   -------                                        --------->HSFC1(2) --------->ANAC58--------->ANAC46------>NtERF2   ------>ZmHOX2a(1)           ------>NtERF2       --------->AtMYB61    <---------ALFIN1<---------ATERF1(1) -->ATERF1(1)                 --------->DEAR3(1)<---------ALFIN1      ======================HOX2a_HOX2a ----->ZmHOX2a(1)   ------>ZmHOX2a(1)  <---------KAN4(2) <---------ANAC58------>ZmHOX2a(1)--------->DEAR3(1) -----SPL7         --------------------->WRI1   --------->AtMYB61     =======================HOX2a_HOX2a -DEAR3(1)   <---------ALFIN1 ----------->HVH21--------->MYB46(3)     ------>ZmHOX2a(1) ------>NtERF2   tcctcctaacatgctccatctccttcttctctccgacgaagaacattccaccaccaatagcatgcccccttcctcctccgcctctagatccgcctccaat  1871800                  ------>ZmHOX2a(1)      ------>ZmHOX2a(1)     <---------ALFIN1  <---------ALFIN1 <---------At4g35610 ------>ZmHOX2a(1) --------->ZAT2  <---------ALFIN1 <---------ZAT2------>ZmHOX2a(1)                                                                   -- --------->At4g35610<---------ALFIN1                                                               -- ============HOX2a_HOX2a   ------>ZmHOX2a(1)                                                       <- ==================HOX2a_HOX2a                                       --------->AtMYB61            --- =====================HOX2a_HOX2a                         --------->ANAC46                        <-- =====================HOX2a_HOX2a                        --------->LBD16                ---------->ID1 ============HOX2a_HOX2a------>ZmHOX2a(1)  --------->ANAC58      <---------ETT(2)     --------->TOE1(1) ==================HOX2a_HOX2a             --------->ANAC58------>NtERF2              --------->TOE2(1) ----->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(se3)            --------->ANAC46             ------>ZmHOX2a(1) -----ATHB12  <---------ALFIN1      --------->AtMYB61  <---------LBD16         ------>ZmHOX2a(1) <--- -->WOX13(1)------>ZmHOX2a(1)    <---------ALFIN1    ------>ZmHOX2a(1)   ------>ZmHOX2a(1) ------>ZmHOX2a(1)   cacagctcctcttcctcctcctcctcctcctctctccacctctgcaagcactctccttccgcgactctcgacctcctcatcctaatcctcgtcctcttct  1871900                                                                                               ------           <---------ALFIN1                                                                   -------         ------>ZmHOX2a(1)                                                                    -------    <----------DOF2                                                                     ------>ZmHOX2a(2)  ------>NtERF2                                                                         =============  --------->ABI4(2)                                                                   <---------ARR11(3) ---->NtERF2                                                                          --------->ARR11(3) ------->LBD16                              <----------DOF2                     ===============HOX2a_HOX2a --------ATERF1(1)             <---------CCA1(2)           ------>ZmHOX2a(1)    ===================== ------>ANAC46               ------>ZmHOX2a(1)             ====================================HOX2a_HOX2a -------DEAR3(1) ------>ZmHOX2a(1)    <---------ALFIN1------>ZmHOX2a(1)         ===================== ------LBD16------>ZmHOX2a(1)<---------CCA1(2)  <-----------GT1                 ------>ZmHOX2a(1)   ccggcgctttcctcctctcctcttacttctcctatctcttccactccttttctctcctctcctctcacttcccttccctctcctccttgatcttctccga  1872000                 =====================HOX2a_HOX2a       ------>ZmHOX2a(2)       ===============================HOX2a_HOX2a       =============HOX2a_HOX2a      --------->GLK1(1)      <---------GLK1(1)      ================================HOX2a_HOX2a      <------ZmHOX2a(2)      ==============HOX2a_HOX2a     <---------ARR11(3)     --------->ARR14(2)     --------->ARR11(3)                                                                             <     <---------ARR14(3)                                                                      --------     <-----------ARR10                                                                       --------     --------->ARR14(3)                                                      --------->HSFB2a(2)   <-     <---------ARR14(2)                                                <---------ANAC46      --------     <---------AGP1                                          ------>NtERF2   <---------HSFB2a(2)   -- >NtERF2         <------ZmHOX2a(2)                           --------->At4g35610             -------- -->DEAR3(1) ------>ZmHOX2a(1)                              --------->DEAR3(1)       <-----------RAV1(1) ---->HVH21  --------->HSFB2a(2)                         --------->ANAC46 <---------ARR14(2)<-------- ===================HOX2a_HOX2a                  ------>NtERF2         <---------ANAC58    <---------ZAT18 =============HOX2a_HOX2a                  <---------ATERF1(1) <----------DOF2     <----------DOF2 -- ============HOX2a_HOX2a       ------>ZmHOX2a(1)--------->DEAR3(1)     <---------ANAC58 <---------ANAC46   cgatgaagatctctcctcgatccctcccgcttcctacttcttcgccttcgccgtcttcttcgccgcttcaattgcgtttctcgacctttgttgtggaccc  1872100         --------->ALFIN1     <------ZmHOX2a(1) ------ZmHOX2a(2) ->TCP11(2)     --------->GLK1(1) ->PCF5 <---------HSFC1(2) --------ARR14(2) ->TCP20--------->HSFC1(2) ------->ARR14(2)       <---------ZAT6 ->TCP16(1) <---------ANAC46 <---------TOE2(3) -TCP16(2)  --------->ETT(1) <---------TOE1(3)                                  ----------->GT1     < ------->AGP1  <---------GLK1(2)       ---------->DOF2--------->ATHB12     <------ZmHOX2a(1) <-------   agatcgaggaagtgtcggaatcccaagtgtaaaggtttgaagaaagcgatggagtttgatttgcaattgcagacggaggaatgtgttaaatctggagcta  1872200  Previous    Next  AGI:  At3g06180.1    Description:  structural constituent of ribosome. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G19020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71088.1); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) Range:  from: 1871694    to: 1873777    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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