Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <-----------GT1                                   <------MYB46(1)                     --------->WRKY38(1) -------YAB1                                      <---------MYB46(3)                 --------->YAB1<- ----YAB1                                   ------------>AtMYB77               ----------->RAV1(1)<-- --ICU4              <-------TEIL         --------->AtLEC2                   <---------At4g35610  <-- >ICU4              <-----------GT1 --------->MYB59<------MYB83              --------->At4g35610  <-- -YAB1   ---------->DOF2          <---------MYB52(1)                  <---------ARR11(3) >>>>>>>>>WRKY6   atttttctaactaaagctctatatacattatgcacagttagttcatgcacagttggtgaaagactacggcttgatattcagcgacaatgttgactatatt  1867000                 ------->GAMYB                --------->MYB46(3)               -------->P            <---------MYB52(2)           XXXXXXXXXXXXXXXXXXXX>MIR420     --------->MYB52(1)   --------->GLK1(1)                      <---------WRKY12   --------->CCA1(2)                     <------ZmHOX2a(2)  <---------ARR14(2)                    --------->ARR14(2)  --------->ARR14(2)                    <---------ARR14(2) --------ANAC46<---------At5g28300     --------->At4g35610 ---------------AG--------->LBD16 --------->ZAT18                        --------->CCA1(2) -------LBD16 --------->MYB52(1) --------->ALFIN1    <---------AtLEC2   <---------ARR14(2) --------->ZAT14 ---------------AGL1     <----------ID1<---------At4g35610              --------->ARR14(2) <---------ZAT14   gacggatatggaaaactaaccgcgaaaacgaccaagtgggcagatcaacgggtttgcataaacaaatggcagaaaatatgcgagagaaaccagttcacag  1867100                                                              <-----------GT1                                                             <-------TEIL             --------->ANAC58                                      ---------->DOF2       --------->CCA1(2)      --------->At4g35610                                   <------ZmHOX2a(1)       <---------GLK1(2)    --------->At4g35610                           --------->LBD16                 --------->ARR14(2)   <---------ZAT2                          --------->ANAC46                 <---------ARR14(2)   <---------At4g35610                          --------->ANAC58               <---------YAB1         --------->ZAT2                          --------->ANAC58             --------->YAB1          ----------->RAV1(1)  -                         <---------LBD16              <---------ATHB12  --------->LBD16       <------            ------>ZmHOX2a(1)     <----------ID1    --------->WOX13(1)<---------LBD16 --------->ANAC58   agaatgactccatcctatgtgaaattctccgcaacgaggacaaagtggtttatgcaatcaagattcacatcttccgcgatgcagcagcaagcacttgatt  1867200        --------->ARR14(2)        <---------ARR14(2)                  <----------DOF2 --------->At4g35610             <---------ANAC58           --------->YAB1 ---------->HVH21                <---------ANAC58    --------->ZAT14 ---GLK1(2)                   <----------DOF2        <---------ZAT14                        <--------   ctctgatgcagttctgcaattgtgtttcttctctttcgagtctagtcttttgtagtaaactattagaatgtctaatttcaaaacatgtttaagacttttg  1867300                                                         <---------ATHB12              <---------ANAC55(2)                                   --------->ATERF1(1) --------->WOX13(1)              ----------->GT1                                  --------->At4g35610<---------MYB52(1)              --------->YAB1                                  --------->ZAT2-------->P                          <---------ATHB12                                <------ZmHOX2a(1)  --------->ANAC46             ------------>CBF                        ------------>CBF    --------->At4g35610             --------->ANAC46                       --------->ANAC46     <---------At4g35610      <---------------AGL15 --DOF2     <----------DOF2  --------->YAB1<---------TOE1(3)         --------------->AGL15   agttctcttgtagactttgaagtaaacacaatgaggagcaggcttaagcttacccgttaatcactctgtttctcttacaagttacaatcatgtaaaatgg  1867400                                  <---------ANAC55(2)                                  <---------ANAC46                                  <---------ANAC58                                  ----------->GT1                                  <---------ANAC58                       <------MYB83                       <------MYB46(1)                      --------->MYB111(1)                      <---------------AtSPL8            --------->ARR11(3)                      --------->MYB59                   <---------ARR11(3)                      --------->MYB52(2)   --------->HSFC1(1)                      --------->MYB46(2)   --------->HSFB2a(2)                  <---------YAB1  --------->ANAC55(2)  <---------GLK1(1)           <---------YAB1            --------->AHL20(2) --------->GLK1(1)       --------->GLK1(1)          <---------GLK1(2)        ------>ZmHOX2a(2)     <---------GLK1(2)   ----------->GT1       ------->GAMYB     --------->YAB1  *TSS <-------TEIL     <---------HSFC1(1)        ----------->RAV1(1)   ----------   <---------KAN4(2)<---------MYB52(1)     <---------HSFB2a(2)      --------->ANAC46     <---------YAB1   gttagaatgatcgttttaatatgttaggtacagatttcgtaatttctcgaaaatgtgatatctcttcttcacaacagaagaacagattattgtgaaagtc  1867500                                                        --------->DEAR3(1)                                                       <------NtERF2                                                       --------->ATERF1(1)                                                      <---------RAP2.3(1)                                                      <---------ATERF1(1)                                                      ------>NtERF2                                         <---------ANAC58                                         <---------ANAC46  <---------ANAC46                                         <---------ANAC58------>NtERF2                                        <-------TEIL  <---------DEAR3(2)                    <--------                          <---------ANAC58           --------->DEAR3(1)                    --------->ARR14(2)                          <---------ANAC46           <---------At1g77200                   <---------ARR14(2)           --------->RVE1(1)     <---------ANAC58    <---------DEAR3(1)                 --------->LBD16          --------->ARR11(3)     <---------ANAC46   --------->ATERF1(1)               <---------LBD16          <---------ARR11(3)     <---------ANAC58  <-----------HVH21           <-------GAMYB---------          --------->GLK1(2) --------->ALFIN1      <---------ANAC58            <---------MYB46(3)         --------->CCA1(1)<---------ANAC55(1)     <---------ANAC58            <---------DEAR3(2)   <-         --------->RVE1(1)<---------bZIP60(2)   --------->ALFIN1             <---------DEAR3(1)    == >DOF2 --------->AHL20(2) <---------ANAC58    <---------ANAC46        <---------YAB1  <---------ANAC46   aaaacaaaaaaaaatctctgaaacaatggcgtgttgcttagcttcgtgctgtgcgtcggcgacttgtggattatgctcgtcggtagcatcggggatatcg  1867600                                                           <---------HSFC1(2)                                                           <---------HSFB2a(1)                                                         <---------ARR14(2)                                                         --------->ARR14(2)                 ---------                                                         <---------GLK1(2)                  <--------              ------>ZmHOX2a(2)                <---------ANAC58                             ---------            --------->ARR14(2)                 <---------ANAC58                        <---------HSFB2a(2) <---------GLK1(1)                            ---------->ID1                         ------>ZmHOX2a(1) --------->GLK1(1)                  ------>NtERF2     --------->LBD16           <---------At4g35610 -GLK1(1)   <---------ARR14(2)      --------->ABI4(2) ------>ZmHOX2a(1)         --------->At4g35610 >GLK1(1)  <------ZmHOX2a(1)     <---------ANAC58    <---------LBD16           <---------ALFIN1  ---- -----ZmHOX2a(1) <----------DOF2 <---------ANAC58   ===============================RAV --------->HSFB2a(2) ====================HOX2a_HOX2a<---------DEAR3(1)  ----------->RAV1(2)<-----------RAV1(1)  <--------   aggaaatcagcgaggatcgcttattgtggtctcttcggtgcctctcttgtcgtctcctggattcttcgtgagactggtgctccgctcctcgagaaactcc  1867700                                               --------->ARR14(2)                                               <---------ARR14(2)     <---------WOX13(1)      --------->GLK1(2)                      <---------HSFB2a(1)    --------->ATHB12     <---------GLK1(2)                       --------->HSFB2a(1)   --------->ICU4 >HSFC1(2)                                   <---------HSFC1(2)    <---------YAB1 -HSFB2a(1)            <---------ZAT14       --------->HSFC1(2)  --------->YAB1 >HSFB2a(1)      ------>ZmHOX2a(1)      --------->DAG2         <---------WOX13(1) ----------------->WRI1--------->ZAT14 ---------->DOF2  <---------At4g35610    ---------->DOF2 -HSFC1(2)       <----------DOF2 ----------->GT1   <----------DOF2<---------TOE2(3)   cttgtacgattctctcatccttttctgaactgggtttgtgaaaaaggaggttccttttagccgagattgatgattggaattgaaagagaccatcaaattt  1867800                                                <---------TOE2(3)                                                <---------TOE1(3)                                               --------->MYB52(1)                                               <---------DOF5.7(2)                                             --------->DOF5.7(2)                                            <-------GAMYB                                           --------->MYB55(2)       <---------ANAC58                                           <---------MYB46(3)       <---------ANAC46                                         <---------MYB52(1)         <---------ANAC58                  ------>ZmHOX2a(2)     --------->LBD16     <---------ANAC58   ------->TEIL                --------->ARR11(3)    <---------LBD16       <---------ANAC58  <---------CCA1(2)                <---------ARR11(3)  --------->ARR14(2)  --------->CCA1(2) <---------ANAC58            <----------DOF2         <---------ARR14(2) --------->ARR11(1) <---------ANAC58          <   cgaaattgggttttctttgatcttgtcaattggaattgaatccggtggttaacgatagatttgggtgatgtcttgtgcttgaatcttactaagcgtttaa  1867900  Previous    Next  AGI:  At3g06160.1    Description:  transcriptional factor B3 family protein. similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G06220.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82365.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76392.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 1864332    to: 1867198    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g06170.1    Description:  TMS membrane family protein / tumour differentially expressed (TDE) family protein. similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT1G16180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71089.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) Range:  from: 1867421    to: 1869954    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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