Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                              -------            --------->LBD16                   <---------AHL20(2)                          --------->AHL20(1)            ------>NtERF2             --------->ARR14(2)                                  --------->AHL20(2)           --------->ANAC46           --------->ARR11(3)                                  <---------AHL20(2)          <---------LBD16         --------->LBD16                                        --------->AHL20(2)        <---------ARR14(2)      <---------LBD16                                 <---------ICU4<------     --------->AtMYB61   <---------ICU4      --------->AHL20(2)                 --------->ARR11(3)   ------>NtERF2    --------->TOE2(3) <---------ARR11(3)    <-----------GT1     <---------ARR11(3)  <---------ALFIN1  <---------MYB59 ----------->ARR10   <---------AHL20(1)      <---------AHL20(1)  --------->ANAC46  --------->TOE1(3)--------->GLK1(1)  <---------AHL20(2)      --------->AHL20(1) --------->MYB46(3)<---------ANAC55(2)<---------ARR14(2)--------->AHL20(2) --------->AHL20(2) ------- ->TEIL --------->ARR14(2)--------->TOE2(3)  <---------AHL20(2)            <---------AHL20(2)<-------   gtccccaccaattccgccattacctaaacattagtccggagatactattaattagcattttatttctatacaaacattttaatattttcaaaaaaattat  1842700    -------->HAHB4    <---------ICU4   --------->ICU4   <---------YAB1   <---------ATHB51                                                                                 < -->ATHB51                                                                    <---------ANAC46      < -->ATHB12                                        <---------RVE1(1)         <---------ANAC46        < ---AHL20(2)                        ---------->DOF2                     --------->ARR11(3)<---------At4g35610 -->AHL20(2)                    --------->ZAT6   --------->ARR11(3)    --------->YAB1     --------->At4g35610 --AHL20(2)           <----------DOF2            <---------ARR11(3)   <---------YAB1     ------->TEIL   ttgtaattatggacatagccaattctttagtttaacacaaaagtattgtgagatattaatcttgttgattctatgattttgtgtatatatgaagcttaca  1842800                          --------->DAG2               <------ZmHOX2a(2)                                           ---------->DOF2              <---------ARR11(3)                                     <---------At4g35610          <--              --------->ARR11(3)                                     <---------CCA1(2)           <---              --------->AGP1                                    ------>ZmHOX2a(2)               ----- ---------ANAC46      --------->YAB1          <----------DOF2 <---------ARR11(3)                <---- ---------ANAC58     <---------YAB1     ---------->DOF2       --------->ARR11(3)                <---- ---------ANAC58------>ZmHOX2a(2)     --------->LBD16       ----------->ARR10                   -----   atgcgtaggggattgagatctatatcataagggagacatccgaaaagcctttgtctcgagggatgatcttcatctctcaaagtagatggagttgagccag  1842900                                                                                                    <                                                                                                    -                                                                                        --------->YAB1                                                                               --------->ANAC58   --- --------DOF2                                                                  --------->ANAC58 <---- ------GLK1(2)      <---------ANAC58                                 <---------ARR11(3)<---------ATHB12 ---->ZAT2          <---------ANAC58                         <---------ZAT6  ---------->DOF2    <---- -----ZAT2         -------->ZAP1                        --------->CCA1(2)   ========================= -----At4g35610  <---------WRKY18(1)                   <---------ARR11(3)   <------ZmHOX2a(1)   <---- ---->At4g35610 ----------->HVH21 --------->YAB1       --------->ARR11(3) <---------TOE2(3)    <-----   cttcttggtcgactactcttgaccgtgcctcaccattcatcttcttaattccttcaagatatagtgatcaagaactgaggaaagtcacaatcaaggtggc  1843000                                                                                      <---------AHL20(1)                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)      <---------DAG2                                                               --------->AHL20(1)      <----------DOF2                                                             --------->AHL20(2)  ------>ZmHOX2a(2)                                                               <---------AHL20(2) ---------ARR14(2)                                                                --------->ATHB51 -------->ARR14(2)                                                                <---------ICU4 -------->ARR10                 ---------->DOF2         ---------->DOF2          --------->ICU4 -----ANAC58      ------>ZmHOX2a(2)                  --------->ANAC58       ----------->GT1 -----ANAC46    --------->ARR11(3)                   --------->ANAC58   ---------->DOF2            *TSS ========HOX2a_HOX2a--------->MYB52(1)               --------->ANAC46  --------->AHL20(2)    <------- -----ANAC58    <---------ARR11(3)            ----------->GT1    ----------->GT1 <---------YAB1   --- -NtERF2  <---------YAB1<----------ID1       <---------------------WRI1<---------AHL20(2)    --------   ttgatccgctttatgaatgatctaatggaacaaaaaaagagagatagagagaaaaacgcaaagaagatggaaattaaagagtaattattttatttcaaca  1843100                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                       <----------DOF2            ---                                                                       <---------DAG2             ---                                                                    <---------ALFIN1             ----                 <---------At4g35610                          --------->At4g35610         <----------            <---------ZAT14            <---------At4g35610    --------->ZAT18           <-----------GT1 --------AGL15  --------->ALFIN1 <---------MYB46(3)         <---------ZAT18<---------ANAC58     <---- ------->DOF2 <---------ANAC58 <---------MYB52(1)           --------->ZAT18<---------ANAC58     <---- ------->AGL15<---------ANAC58<----------DOF2  ---------->DOF2<---------At4g35610 ------------>CBF---   aaaagaagaattagtagagtgctgctatattcctttggttaagcagtctgaaaggagaagagggtgctcaacacttttcttgtgttcaattttcacttcc  1843200  ------>MYB46(1)  -------->P  ------>MYB83 --------->MYB55(1) ---------MYB111(1) -------->MYB46(3) ---------MYB59 ---------MYB111(2)                                      <---------ICU4 ---------MYB55(2)                                       --------->YAB1 ---------MYB46(2)        <------MYB83                  <---------ATHB12 --->MYB83                <------MYB46(1)           --------->AHL20(2) --->MYB46(1)             ----------->GT1           <---------AHL20(2)                         <----- -->ZmHOX2a(1)    --------->TOE2(3)             --------->AHL20(2)                 --------->WRKY12 -GT1             --------->YAB1               --------->AHL20(2)                  --------->WRKY38(1) -----MYB111(2)  ----------->GT1     XXXXXXXXXXXXXXXXXXXX>MIR776               <---------TOE2(3) -----MYB59     <---------TOE2(3)    --------->ANAC46 <-----------GT1          --------->DAG2  ------ ----->P    --------->TOE2(3)  --------->GLK1(1)<---------AHL20(2)      ----------->GT1       <------   tacctaccaatatttcttaatgttaatttggtgatttctaagtcatctatttattttaatcatcttcatttcatgtgtaaaaaggttgactctcttaaat  1843300                                                                                                    *TSS                                                                                                 <---                                                                                     <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                                     <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                         ------->TEIL               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <xxxxxxxxxxxxxxxxsmallRNA(le3)         <----                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <---------ZAT14              <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <---------DEAR3(2)           <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ZAT6  <----                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <------NtERF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AtMYB61                                    <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                    --------->LBD16<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(si3)                                   <---------LBD16 <---------ARR14(2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <---------LBD16  --------->ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxsmallRNA(le3)                                 ------>MYB46(1)  <xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <---------ZAT2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 ------>MYB83<xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 --------->ZAT2<---------LBD16               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                --------->MYB55(1)<xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <-----------RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <---------MYB55(2)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <xxxxxxxxxxxxxxxxxsmallRNA(le3)                               <---------ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               --------->MYB46(3)--------->LBD16            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                               <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <---------At4g35610<xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<------NtERF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <xxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----ARR11(3)          <-----------RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ARR11(3)          ====================RAV<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---CCA1(2)<----------ID1     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   cttttcacttaaaaaaacaaacaaattgttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggttctattctaccactagaccactggtgc  1843400                                           --------->GLK1(2)                                           ------->TEIL                                           <---------ARR14(2)                                           --------->ARR14(2)                                           <-----------ARR10                                        <---------ANAC55(2)                                        <---------YAB1                                        --------->ANAC55(2)                                      <-----------GT1                                   <---------ICU4           <----------DOF2     <-------TEIL                 <---------AHL20(2)     <-----------GT1 ------YAB1                       --------->AHL20(2)    <-----------GT1        ------------------>SPL14 -----ANAC58                    --------->TOE2(3)<---------ZAT6               <---------ANAC58 --RAV1(1)                  <---------AHL20(2)   ----------->GT1<---------YAB1*TSS -----ANAC58               --------->AHL20(2)   <---------TOE1(3)             <---------ANAC58    ---   ttattgattcatctatccgaactaaactattaaatattaattacgaatctagggttatttatctttctgattaagagttttcgtctgtacaagtggaatt  1843500                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                          <---------GLK1(1)                                                                                =====================                                                                                =================HOX2a_HOX2a                                                                                <------ZmHOX2a(1)   -                                     ------>ZmHOX2a(2)                    <---------HSFB2a(2)       <                                   <---------ARR11(3)                --------->HSFC1(2)  <---------AGP1                                   --------->ARR11(3)                <---------HSFC1(2)  <---------ARR11(3)                                <--------P                          --------->ANAC58     <-----------ARR10                                <---------WOX13(1)                  --------->ANAC58     --------->ARR11(3)                              <---------MYB46(3)                <---------HSFB2a(2)  ---------->DOF2-         --------->At4g35610 --------->ALFIN1         --------->GLK1(2)   --------->HSFB2a(2)       <   ---------->DOF2        --------->DAG2          <------NtERF2 --------->HSFB2a(2)<------NtERF2   -- -------->GT1            ---------->DOF2 <---------LBD16       <---------LBD16  ==================HOX2a_HOX2a   ttgaaaaaagaagcagagagcgatggagaaagtggttgatctcttcggagtcggagaagctaattcccagaagctactcgaaggaggcaaagatctcagc  1843600  Previous    Next  AGI:  At3g06100.1    Description:  NIP7;1/NLM6/NLM8 (NOD26-like intrinsic protein 7;1); water channel. Identical to Probable aquaporin NIP7-1 (NIP7-1) [Arabidopsis Thaliana] (GB:Q8LAI1;GB:A0MEU4;GB:Q1PES9;GB:Q9M8K8); similar to NIP4,1/NLM4 (NOD26-LIKE INTRINSIC PROTEIN 4,1), water channel [Arabidopsis thaliana] (TAIR:AT5G37810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71103.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 1841177    to: 1843099    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06105.1    Description:  pre-tRNA. tRNA-Gly (anticodon: GCC) Range:  from: 1843330    to: 1843400    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06110.1    Description:  MKP2; protein tyrosine/serine/threonine phosphatase. similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO71100.1); contains InterPro domain Protein-tyrosine phosphatase, dual specificity; (InterPro:IPR000340); contains InterPro domain Protein-tyrosine phosphatase; (InterPro:IPR000387) Range:  from: 1843478    to: 1844781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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