Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                  <---------GLK1(1)       <---------ARR11(1)                        <---------AGP1                                   ---       ------->TEIL                              --------->ARR11(3)                               <--       <---------ARR14(2)                        <---------ARR11(3)                              <---       <-----------ARR10                         <---------ARR14(3)                              ----       --------->ARR14(2)                        --------->ARR14(2)                 <---------ANAC58       --------->GLK1(2)                         <---------ARR14(2)                 <---------ANAC58      <---------ARR14(1)                         --------->ARR14(3)        <---------ARR11(3)  ------ --------At4g35610                          <------ZmHOX2a(2)              --------->AHL20(2)-------- ------->STY1(2)        --------->YAB1     --------->ARR11(3)            --------->ANAC58 --------->TOE2(3) -----DOF2           --------->YAB1  ---------->DOF2                     --------->ANAC58--------->YAB1   tagctagcgaatctactaaacattgataatattccaatgcaaagagatcaagatctcagaataagactgattatcaagaaattagtgcttaacataaaaa  1825300     --------->ANAC58     --------->ANAC58     --------->ANAC46 ------>AHL20(2) -------ICU4                            <---------TOE2(3)                    <------ZmHOX2a(2) ------AHL20(2)                     <-------TEIL          <------ZmHOX2a(2)  ======================== ----->AHL20(2)                 <---------TOE2(3)       <---------At4g35610 --------->ARR11(3) --->YAB1                       <---------TOE1(3)       --------->At4g35610 <---------ARR11(3) ->AHL20(2)                     --------->MYB59   <----------DOF2 ------->TEIL ----------->GT1<------   taatttcaagaaacatgtttctattgtataggtttaggttcaaaggtttcttctttgcagatcaaatgaacatatcaagatcagtgaaacaaaatggtga  1825400                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                   <---------ARR14(2)                   --------->ARR11(3)                   <---------ARR11(3)             --------->YAB1        <---------YAB1      <------ZmHOX2a(1)                                                                            --      =====================HOX2a_HOX2a         <---------AHL20(2)                                  <-      ======================HOX2a_HOX2a        --------->AHL20(2)                        <---------At4g35610  ---------->DOF2  --------->ARR14(2)        --------->YAB1      <---------ARR14(2)      --------->At4g35610 ============HOX2a_HOX2a     --------->At4g35610                 --------->ARR14(2)   <---------At4g35610 ---ANAC46  <-------TEIL     <---------At4g35610            ------->TEIL              --------->At4g35610   gtaagaaaggatgattcataagatcggtttcagcgtcaatagcccaaatataaattccaatgtatcagatttgatagtctaggttattagctgctaacac  1825500                                   <---------ATHB12                                  --------->GLK1(2)                             --------->RAP2.6(2)                             --------->DREB2C(2)                             ------->GAMYB                             --------->DEAR3(1)                            --------->MYB46(3)                            --------->DEAR3(2)                           ------->TEIL                                                          ----                     <-------TEIL--------->WOX13(1)                                     <---------ANAC58                     ------>ZmHOX2a(2)                                           --------->CCA1(2) --   --------->LBD16  <------ZmHOX2a(2)                               --------->At4g35610 <---------ANAC58 ------->ARR14(2)  <---------ARR14(2)                             <------ZmHOX2a(1)--------->CCA1(2)- --------ARR14(2)  --------->ARR14(2)                  <---------GLK1(1)  ---------->DOF2  -------->P   agttccgaaatcaaacaatgggatccatgaaccgccaatctattatctgagagttggaaatcggagaaggagatgagaaagagagataaggcttacctcc  1825600                      ------>NtERF2                      --------->LBD16                      <---------ATERF1(1)                      <---------DEAR3(2)              --------->HSFC1(2)              <---------HSFC1(2)              --------->ZAT2              <---------ZAT2              <---------HSFB2a(1)             ----------->ARR10             --------->ANAC58         <---------YAB1        --------->ANAC58           --------->ICU4        --------->ANAC58      <---------ANAC58      --------->MYB52(1)   ----------->HVH21     <---------ARR14(2) --------->ARR14(2)     --------->ARR14(2)<------NtERF2<---------ICU4                                                  <    <------NtERF2    <---------ATERF1(2)                        --------->ANAC58                    -   --------->LBD16   <---------DEAR3(1)                         <---------ANAC55(2)              ----  <---------ANAC46   --------->ATERF1(2)               --------->At4g35610                    <------ <---------LBD16     --------->DEAR3(1)   <---------ZAT6        --------->ANAC58            ------>ZmHOX2a(1) ----->MYB52(1)     --------->ATERF1(1) <---------At5g28300 <-----------HVH21          <---------GLK1(2) ------->MYB46(3)   <---------LBD16<---------YAB1      <---------At4g35610            --------->HSFB2a(1) ------>GAMYB--------->ANAC58 <---------ANAC58   --------->CCA1(2)   *TSS             <---------HSFB2a(1)   aacggcggaaacggcaagcttcgccggctctgacttgattattactgtgagagacggagatgagtcacgcatagggtttagagtggaaagattcctcttt  1825700                                          ====================================HOX2a_HOX2a           -                                          ------>ZmHOX2a(2)                                         <                                         <------ZmHOX2a(2)                                          -                                         =====================================HOX2a_HOX2a           <                                        <---------ARR11(3)                                     ------                                        <-----------ARR10                                      ------                                        --------->ARR14(2)                                   ------->GAMYB                                        <---------ARR14(2)                                 --------->ANAC58                                        --------->ARR11(3)                                 -------->P            <----------DOF2            <------ZmHOX2a(1)                                   --------->ANAC58           <---------YAB1           --------->YAB1                                         --------->ANAC46      <---------ICU4               <---------ATHB12                                       ------->GAMYB ---------At4g35610            ------------>CBF                                          --------->MYB46(3) -------->At4g35610         --------->ANAC58                                             <---------MYB55(2) ----->RAP2.6(3)       <----------ID1<---------TOE2(3)                           <----------DOF2----- ----DOF2<-----------GT1    --------->ANAC58                           ------>ZmHOX2a(1) <---------MYB111(2)   tcggctcaaaattacttttgtctatgggccaagcccaataaggatcttatcaacaaatttgacatactacgtccttgtaaggcctttcacaacaacccac  1825800                                                                     <---------------AGL15                                                                     <----------DOF2  <----------DOF2                                                   <-----------------AGL3 -------->ZAT2                                                      <---------ANAC58 ---------ZAT2                                                      <---------ANAC58              --- -------->At4g35610       <---------ALFIN1                  --------->ANAC46                     <--- ---------At4g35610      --------->At4g35610                --------->ANAC58       <---------ANAC58 >MYB46(1)               <---------At4g35610         --------->ANAC46--------------->AGL15    ------- >MYB83               --------->At4g35610     --------->TOE2(3)     <-----------------AGL2    ------- ---->ANAC46------>ZmHOX2a(1)              <-----------GT1  --------->ANAC58       <---------ANAC58   tcagctttcatgtcctccctcaagagcagcacctagttcatctatataccttcatactccacaagcaatggctttatttggcattgggtttgaaatagct  1825900                                                        --------->ZAT18                                                       ------>NtERF2                                                <------ZmHOX2a(2)     <---------ARR14(2)                         --------->GLK1(1)     --------->ARR14(2)          --------->ATHB12------>ZmHOX2a(2)   --------->LBD16              <---------YAB1 --------->AGP1 <------NtERF2              <---------ANAC58   <---------AGP1 <---------LBD16            <---------ANAC46   <---------ARR11(3) ------>ATERF1(1)           <---------ANAC58   <---------ARR14(2)                                 <-- ------ATERF1(1)           --------->ZAT2      --------->ARR14(2)                    <------ZmHOX2a(1) -->At4g35610              <---------ZAT2      --------->ARR11(3) ----------->ARR10 ----------->GT1 -->ZAT2           ---------->DOF2 <---------WOX13(1) --------->ANAC46    <<<<<<<<<<<<<<<<<LFY<------   ggctccggattttagtcaaatgaaagagcagcttgtgattgcagaaacagatctcgaggccacaaggttagagactcaacaatggaaggagaaacaccag  1826000            --------->At4g35610                            <------ZmHOX2a(1)      ---------->DOF2                          <------ZmHOX2a(1)                           --------->ANAC58     <------ZmHOX2a(1)                        <---------YAB1         --------->TOE1(3)     --------->ANAC46 <---------ANAC46                            <---------TOE2(2)       --------->TOE2(3)     --------->ANAC58 ------P    ----------->GT1                  <---------TOE2(3)<---------ZAT6               ---------- -----RAV1(2)                      --------->ALFIN1  <---------At4g35610      <<<<<<<<<<<<<<<<<LFY --   gtagcgaggaaagaagctaaattgctcaagaacacgagtgggagacttaggattaagcagaggagtcttaaccttcatgttgacaatggggacacgaaaa  1826100            ------->GAMYB            <---------ALFIN1                                 --------->MYB52(1)            ----------->RAV1(1)                           ----------->ARR10  --------->ARR14(2)                           <-----------GT1      --------->ANAC58  <---------ARR14(2)                        <---------ARR14(2) --------->ANAC58 <---------CCA1(2)      <---------YAB1 ------->TEIL   <------MYB46(1) ->GT1     --------->MYB46(3)--------->YAB1 --------->ARR14(2) --------->ANAC58       <---------AHL20(2) ------->YAB1     <---------MYB46(3)<---------YAB1    <------MYB83  --------->ANAC58  --------->AHL20(2)   atcatatccctcaaccacattggtttcttattcatattatgaaccagatttacatttggtgagaaacggcaagacacataagttttatttaaactgaaac  1826200  Previous    Next  AGI:  At3g06040.1    Description:  ribosomal protein L12 family protein. similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT4G36420.1); similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT1G70190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64322.1); contains InterPro domain Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); contains InterPro domain Ribosomal protein L7/L12, C-terminal; (InterPro:IPR013823); contains InterPro domain Ribosomal protein L12, chloroplast (InterPro:IPR015608) Range:  from: 1824382    to: 1825669    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06050.1    Description:  ATPRXIIF/PRXIIF (PEROXIREDOXIN IIF); antioxidant/ peroxidase. Identical to Peroxiredoxin-2F, mitochondrial precursor (PRXIIF) [Arabidopsis Thaliana] (GB:Q9M7T0;GB:Q8LEJ1;GB:Q8LPM1;GB:Q941C2); similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os01g0266600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042680.1); similar to hypothetical protein OsJ_001178 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11353.1); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin Range:  from: 1826079    to: 1827867    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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