Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         ---------->TaMYB80                                                       --------->GLK1(2)                                                       --------->ARR14(2)                  ----------                                                   --------->LBD16                       --------->CCA1(2)                                                 ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                                               <---------ARR14(2)                       --------->ARR11(3)                                               --------->ARR11(3)                       <---------ARR11(3)                                               <---------ARR11(3)                       <---------ARR14(2)      <-------TEIL                         =============HOX2a_HOX2a                     <---------AGP1  <---------YAB1                           <------ZmHOX2a(1)         <----------DOF2    --------->AGP1 ------->GLK1(2)                          --------->ICU4      --------->MYB52(1)        --------->ARR14(2) -->LBD16                                >>>>>>>GRF7  <---------GLK1(1)<---------WRKY18(1)------>ZmHOX2a(2) ->HSFB2a(2)                            <-----------RAV1(2)--------->At4g35610         <---------CCA1(2) --HSFB2a(2)                          <-----------HVH21<---------ARR14(2)      <---------ARR11(3) -ANAC46            <-----------HVH21<---------bZIP60(1)   <---------At4g35610 --------->ARR11(3) -LBD16--------->YAB1<---------YAB1  --------->bZIP60(1)<---------At4g35610  ----------->ARR10   gactctgattcatactcaaaattgtcatggagagtagcgatgtcaggatgatctgggaatctgctaacgagcttgaacggagattttgcagatctgaaaa  1791400                                                                                        ------->GAMYB                                                                     --------->ARR14(2)<------------AtMYB77                                                                     <---------ARR14(2)<---------MYB55(2)                                                                    <------ZmHOX2a(1)  --------->MYB46(3)                                                                  --------->ANAC58    --------->ZAT2                                                                  --------->ANAC58    --------->At4g35610                                      <----------ID1             --------->SPL7       <---------At4g35610 ->GT1                              ----------->GT1       <------ZmHOX2a(1) <---------ETT(2)   attgaattcaaaacaaaaacaaatattaagagagggaatggagacaaggagagaagaagaggaagcgtaaggaacctgtagacgttccaactgccagtat  1791500                                                             <---------ZAT2                                                             --------->At4g35610                                                     --------->ANAC55(1)  <---------At4g35610                                                     --------->ANAC55(2)  <---------HSFC1(2)                                                     --------->ANAC58     --------->HSFC1(2)                                              --------->At4g35610      <------ZmHOX2a(1)                ----------->RAV1(1)         --------->YAB1   <---------At4g35610        <------ZmHOX2a(2)       --------->HSFB2a(2)         --------->ATHB12  <---------ANAC55(2) --------->ANAC58       <---------HSFB2a(2)   --------->ICU4<------ZmHOX2a(2) --------->ZAT2             =============      <---------LBD16 ---------->DOF2      ===================================HOX2a_HOX2a     <---------LBD16  --------->ZAT14<---------WOX13(1)    --------->YAB1--------->ANAC58          -- <---------GLK1(2)--------->ZAT6  <---------YAB1     --------->ANAC58  ========================HOX2a_HOX2a   tcagtttctcgggaagaacaacactatagccattatctgattgcgatcagaagacaagtaatcagcagcgagaggaagctactagtatagatcagagaga  1791600                                     --------->ALFIN1                                    <-------GAMYB                                    <------NtERF2                                   <---------DEAR3(2)                                   <---------DEAR4(2)                                   --------->MYB55(2)                                   <---------MYB46(3)                                  --------->ALFIN1                                 --------->ATERF1(1)                                 <---------ABI4(1)                                 <------NtERF2                                ------>NtERF2                                --------->LBD16                                <---------DEAR4(2)                                <---------RAP2.3(1)                                <---------ATERF1(1)                  --------->ANAC58<---------DREB2C(2)           --------->ANAC46     <---------ERF1 --------->At4g35610           <---------ANAC55(2) --------->DEAR3(1)           --------->ANAC55(2) <---------DEAR3(1)        --------->ARR14(2)     <---------ATERF1(2)                                  --------->ALFIN1        <---------ARR14(2)     --------->ATERF1(2)                             <---------bZIP60(2)       <---------GLK1(1)       <---------RAP2.3(2)                             <---------ANAC46     -     <------ZmHOX2a(1)        --------->ATERF1(1)       --------->ALFIN1       <---------O2      <---    ----------->GT1           <---------LBD16  <---------At4g35610            <---------------------- ===========HOX2a_HOX2a      <---------ATERF1(1)--------->ALFIN1            ----------->HVH21    <--- ------->CCA1(2)  --------->ANAC58<---------DEAR3(1) <------ZmHOX2a(1)      ----------->TGA1     <---   gagatgaggaaatacggaccaagacagaactcgccggcggtgggattggagcggaggagaggggaagagcgagaagaggtgacgaggtgagagtggatag  1791700                     <---------DEAR3(1)                     <---------ANAC46                     --------->ALFIN1                    <---------ABI4(1)                    <------NtERF2                    --------->ATERF1(1)                    --------->At4g35610                    <---------At4g35610                   <---------RAP2.6(1)                   <---------RRTF1(1)                   <---------DEAR4(2)                   <---------ATERF1(1)                   <---------RAP2.3(1)                   <---------ERF1                   <---------ORA47(2)                   ------>NtERF2                  <---------RRTF1(2)                  --------->ALFIN1                  <---------RAP2.3(3)                  <---------RRTF1(3)                  <---------ANAC46                  <---------DEAR3(1)                  <---------RAP2.3(2)                  --------->DEAR3(1)                  <---------ATERF1(2)                  <---------RAP2.6(2)                 <---------ABI4(1)                 <------NtERF2                 ------>NtERF2                <---------ATERF1(1)                <---------RAP2.3(1)                <---------ORA47(2)               <---------RAP2.3(2)               <---------DEAR3(1)              --------->SPL7           <---------ANAC58           <---------ANAC46           <---------ANAC58          <------NtERF2          --------->ATERF1(1)         <---------RRTF1(1)         <---------ORA47(2)         <------------------SPL14         <---------ERF1         <---------RAP2.6(1)                                  <---------ARR14(2)         <---------ATERF1(1)                                  --------->ARR14(2)         ------>NtERF2 <------NtERF2                       --------------->AGL15         <---------DEAR4(2)                               <-----------------AGL1         <---------RAP2.3(1)                              <-----------------AG        <---------RAP2.3(2)                               ----------------->AGL1        <---------RAP2.3(3)                               ----------------->AGL2        <---------DEAR3(1)                                ===========================================        --------->DEAR3(1)                               -------->P        <---------RRTF1(3)                              <-----------GT1       --------->ATERF1(1)                          --------->ATHB51       <---------ABI4(1)                            <---------ICU4                        ---------->DOF2      <---------RAP2.3(1)                           <--------ATHB1                       --------->LBD16    --------->SPL7--------->ATERF1(2)               <---------AHL20(2)                 ------>ZmHOX2a(2)  --------->ARR11(1)<---------LBD16                <---------YAB1                  <---------KAN4(1) ---------->ARR10--------->ATERF1(1)               --------->ICU4                  --------->KAN4(1) ------ANAC58 <---------ABI4(1)               --------->TOE2(3)             <------ZmHOX2a(1) -TaNAC69(2)<---------SPL7<------ZmHOX2a(1)--------->GLK1(2)  <---------GLK1(2)   <---------KAN4(2) ------ANAC58<---------ATERF1(1)       >>>>>>>>>TBF1--------->AHL20(2)      ==================HOX2a_HOX2a ------ANAC46--------->ALFIN1       >>>>>>>>>TBF1--------->YAB1          --------->At4g35610      ---   cgttgatacggcggcgtgcggcggcggaggaagacgaagaagaagaatccataataatttacccgattcggaatcagaggagagaatgatccgaaagaga  1791800                            <---------DAG2                            <----------DOF2                         --------->ANAC58                         --------->ANAC58                                                          --                      --------->ATERF1(1)                                                   ---------                      <------NtERF2                     --------->ARR14(2)                  <--------          <---------------AGL15                  <---------REM1(1)     <XXXXXXXXXXXXXXXXXXXXXXXMIR163          --------------->AGL15                  <---------bZIP60(2)<---------ANAC46        ---------         ----------------->AGL3                  <---------bZIP60(1)<---------ANAC58        ---------        *TSS    --------->DAG2                   --------->bZIP60(1)<---------ANAC55(1)    <---------AHL20(2) =========================MADS_MADS            <---------ICU4       <---------ANAC58       <---------AHL20(1) ------->DOF2  ---------->DOF2              --------->YAB1   <---------MYB52(1)            --------->AHL20(2)   gaaagatagatactaaaaaaaggaggcacgcttttctaactctgtttcatgatgtcgctatccgttgatttcgtgttttcaagtcttctccaaattattt  1791900                   -------->HAHB4                   --------->YAB1                  <---------YAB1                --------->YAB1                <---------ICU4               --------->ICU4               <---------YAB1             <---------ICU4            <---------YAB1            --------->ICU4                                    --------->AHL20(2)       --------->YAB1                                         <---------ATHB51     --------->AHL20(2)                                       <---------AHL20(2)  --------->AHL20(2)                                         <---------AHL20(1) ------->YAB1--------->YAB1                               --------->AHL20(1)             <---------ICU4 >AHL20(2)<---------ICU4           <----------DOF2        <---------AHL20(2)             --------->ATHB51 -AHL20(2)--------->YAB1        ---------->ID1            --------->AHL20(2)         <-------TEIL >ATHB12 <---------YAB1         <-----------GT1        --------->YAB1 <---------GLK1(2) <---------YAB1 >ATHB51 --------->ICU4        <-----------GT1   ----------->GT1      --------->ARR11(3)--------->ICU4   gtcataaaataataataataataatacactatttttccttttttcaaatggaggtaaaaataaaataattcagatttttgaatcaaattcattatttcaa  1792000                                                                             <---------YAB1                                                                           --------->YAB1                                                                           <---------ICU4<------ZmHOX2a(1)                                                                      --------->ZAT14   --------->ANAC46                                                                 <---------ZAT18   <---------YAB1                                                                 --------->ZAT18 <---------ICU4              <---------AHL20(2)                                 <---------ZAT14 --------->YAB1              --------->AHL20(2)                           =====================================HOX2a_HOX2a             --------->AHL20(2)                            <------ZmHOX2a(2)<----------DOF2     ----- ---------->DOF2        <---------ARR11(3)     ---------->DOF2   --------->ZAT14<---------YAB1  <----   attcaaaggaatacatttaatttcaagaactcacaaaaatggagttgattaaagaacagcgatcaagagcactacaatctttattattacaggaaactag  1792100                                                                  ======================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)                                                                 --------->ARR11(3)      ------------          --------->ZAT14                                        <---------ARR11(3)      <-----------      <-----------GT1                            <---------At5g28300                    <---------YAB1    --------->AHL20(2)            --------->TOE2(3) <---------At4g35610          ------>ZmHOX2a(1)--- ---->STY1(2)                     --------->TOE1(3) --------->At4g35610<---------ALFIN1 ------------- -----STY1(2)         --------->TOE2(3)         <-----------GT1 <---------At4g35610<---------ALFIN1<-   ctagaattaaactgctctcttaagcctaaatgtttacctgaaaaaactatttacagcttagttttgagatcacacacttggtcctccactaccattgaag  1792200                                                        ----------->RAV1(1)         <---------TOE1(1)                              ===========================RAV         <---------TOE2(1)                        <---------GLK1(2)      --------->LBD16 --->AGL15                                        --------->ARR14(2)     ------>ZmHOX2a(1) ----AGL15                                    ---------->DOF2           <---------LBD16 ------->DOF2                              --------->TOE2(3)           ----------->RAV1(2) ---->AGL1                               <---------ARR11(3)          <-----------GT1      ---------->ID1 --------GLK1(1)                         --------->ARR11(3)---------->DOF2   <----------DOF2     ----   gaaagccgagtacgagattgcaatgcgatattgaatccaaaggtatcttaaagattcccaacaaagtgatttttcctggcatttttgctcttgtctccat  1792300  Previous    Next  AGI:  At3g05970.1    Description:  LACS6 (LONG-CHAIN ACYL-COA SYNTHETASE 6). similar to LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) [Arabidopsis thaliana] (TAIR:AT5G27600.1); similar to ACS2 [Ricinus communis] (GB:ABC02881.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71137.1); similar to AMP-binding protein [Brassica napus] (GB:CAA96522.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 1786324    to: 1791808    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05975.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63322.1); contains InterPro domain Harpin-induced 1 (InterPro:IPR010847) Range:  from: 1792151    to: 1792720    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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