Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------CCA1(1)                                    <---------RVE1(1)                                   --------->AHL20(1)                      --------->ANAC58                                   <---------AHL20(1)                  <---------At4g35610                                   --------->ARR11(3)                  --------->At4g35610                                   <---------ARR11(3)                  <---------ZAT2     <----------DOF2              --------->YAB1                --------->YAB1    ------->TEIL ---->YAB1                     ---------->DOF2                  <---------ICU4------->TEIL -GLK1(1)                  --------->WOX13(1)                  <-------TEIL--------->ANAC58 --------- >CCA1(2)              ----------->GT1          <---------CCA1(2)      --------->ZAT2      <---------YAB1   gtaatttctttgtggaaaacatatatagttaatcaaagatatttcatcttaaatctcgttctatattcatcacagctacgcatgtatgtttgtatgatta  1758100                                      --------->At4g35610                                      <---------At4g35610---------->DOF2                               ---------->DOF2          <------ZmHOX2a(1)                        ==============================HOX2a_HOX2a                        ------>ZmHOX2a(2)      <------ZmHOX2a(1)           <------ZmHOX2a(1)       >>>>>>>>>EIN3   <------ZmHOX2a(2)   <---------TOE2(1)              ----------->GT1      <-------TEIL     ===============================HOX2a_HOX2a        ----------->GT1 --------->AHL20(2)   <---------ARR11(3)   <---------TOE1(1)            --------->CCA1(2)         --- >ATHB12              --------->ARR11(3)   <---------ANAC46         <------ZmHOX2a(1)       <--------   gattaatatacattgagggggagagatcgtggagaaagagagcttacgaggagcaagaggaaagaacagaggagataggaaaaatcacttggtgatgata  1758200                       <---------ARR11(3)                 --------->HSFB2a(2)                 <---------HSFB2a(2)                 --------->LBD16                <---------HSFB2a(2)                <---------LBD16                <---------ANAC46                --------->HSFB2a(2)            <---------ARR14(2) ---------->DOF2            --------->ARR14(2)------>MYB46(1)           <------ZmHOX2a(1)  --------->MYB52(1)   <---------ARR14(2)                   <---------ARR11(3)         <---------TOE2(3)  <---------MYB59        --------->ARR14(2)           ----------->GT1 ------->DOF2  <---------LBD16------>MYB83        --------->GLK1(1)           ---------->DOF2 -YAB1 ---------->DOF2 --------->ARR11(3)       --------->YAB1           ---------->DOF2--------->GLK1(2)   taaagagcgtaaaggattccgggaagataaccaaacagcgtcaaaatcaaacatatccaaaactcaacctgcaaaaaaagaaaagtcaaaaatctgaaaa  1758300                                                                                    ------>MYB46(1)                                                                                  <---------MYB59                                                                                  ------->GAMYB                <---------AHL20(2)                                               --------->MYB46(3)              <---------CCA1(1)                                                 --------->ANAC58              <---------RVE1(1)                                                 --------->ANAC58             <---------ARR11(3)                                             --------->AtLEC2             --------->ARR11(3)                                           <---------ANAC58         <---------YAB1                                                   <---------ANAC58       --------->YAB1                                                 <---------ZAT14       -------->HAHB4                                --------->At5g28300------->TEIL------>MYB83       <---------ICU4                       ---------->DOF2           <---------ZAT18              <-      --------->ICU4        <---------GLK1(2)       ----------->GT1   --------->ZAT18             ---      <---------ATHB51  ---------->DOF2   --------->YAB1            <---------------AtSPL8  ---------   ttcgagtaattatgagatttttttaaaaaagaaactctttctaatgaaaagaagcagtaaaaatgcaaatagtgtaccttgcaaccaaatttgagaaaga  1758400                                                                                               <-----                                                                                         <---------YAB1                                                                                       <---------AHL20(2)                                      ---------->DOF2                                 --------->AHL20(2)                                    --------->ANAC58                                  --------->ICU4                                    --------->ANAC58                               --------->AHL20(2)                            --------->KAN4(2)  --------->ZAT14                    <---------AHL20(1)      <------ZmHOX2a(1)    --------->KAN4(1)   <---------ZAT14                    --------->AHL20(1) ------>NtERF2             <---------KAN4(1) --------------->AtSPL3            --------->AHL20(2) *TSS -----NtERF2              <---------KAN4(2)  --------------->AtSPL8        ---------->DOF2  <-------- --->NtERF2    <---------YAB1       --------->ANAC46          --------->ARR11(3)  --------->ARR11(3) ->DOF2  <------NtERF2   --------->YAB1   --------->ALFIN1    <---------ARR11(3)  <---------ARR11(3)-   cgccgagaggaggcaagatgatagcaagaataatctctacgaaagtggctgtactcattttcaagctcttcaaatttcaaagaaaatatttattatgctt  1758500                                                                                            <--------                                                                                            ---------                                                                                           <-------GAMYB                                                                                          --------->MYB55(2)                                                                                          <---------MYB46(3)                                                                                      --------->ALFIN1                                                                                     ------->MYC2                                                                                     ------->PIF5                                                                                     <-------PIF5                                                                                     ------->MYC4                                                                                     <-------MYC4                                                                                     <-------MYC2                                                                                     ------->MYC3                                                                                     <-------MYC3                                                                                    ===============MYC_MYB                                                           --------->GLK1(1)        =================                                            --------->AHL20(2)                      <---------PIF3(3)                                            <-----------TBP<------ZmHOX2a(2)        --------->ANAC46                                            <---------AHL20(2)                      --------->O2                      ------->TEIL        <-----------TBP <---------ARR11(3)        <---------O2                --------->ICU4            --------->AHL20(2)         <---------AHL20(2)  <---------AtMYB61                <---------YAB1            <---------AHL20(2)------>ZmHOX2a(2)       --------->TGA1a             <---------YAB1           ------>ZmHOX2a(1)   --------->ARR11(3)        --------->PIF3(3)      --------->ARR11(3)              =============================HOX2a_HOX2a      <---------TGA1a -----DOF2   --------->ICU4           ============================HOX2a_HOX2a  --------->ARR14(2) -YAB1<---------ARR11(3)<----------DOF2 <-----------TBP   <---------ARR14(3)   <---------ARR14(2) -------->ZAT6<---------ICU4   --------->ZAT14         --------->LBD16     ------->TEIL  <---------ANAC46   taacactaaatcttgatgattatggactttctctactctcctatatatatatagacccgagatctctatattttatgagcctatccacgtggtggttact  1758600                                                                                                   <-                                                                                                 <---                                                                                                -----                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(1)                                                                                        <---------AHL20(1)                                                                                       --------->YAB1                     <------ZmHOX2a(1)                                             --------->AHL20(2)               --------------->AGL15                                    --------->TOE2(3)    <-------               <---------------AGL15                                 <---------GLK1(1) <---------AHL20(2)              <---------ANAC58                        <---------ICU4 --------->GLK1(1) --------->AHL20(2)              <---------ANAC46                 <----------DOF2  <---------LBD16    <---------YAB1<--- -ARR14(2)    <---------ANAC58              ---------->ID1  <----------DOF2        <---------AHL20(2) >ARR14(2) <----------DOF2                 <-----------GT1 <---------ANAC58       <---------AHL20(2) =====================bZIP_DOF        <---------AHL20(2)   <---------ANAC58       --------->AHL20(2)<   ctgtaacttctccctttcttgtaggagtaataggttttatttttttttccttttaaaaattgcttttggggaaatctaaatgattttaattatattttcc  1758700   <----------DOF2                                          <---------AHL20(2) <---------YAB1                                            --------->AHL20(2) --------CCA1(2)                                           --------->AHL20(1) -------DOF2                                               <---------AHL20(2) ---->TOE2(3)                                          <---------AHL20(2) ----GT1       <---------LBD16                        --------->AHL20(2) ------DAG2--------->ICU4                   --------->WOX13(1)                               <------- ---------ARR11(3)                      ----------->GT1--------->AHL20(2)                    <-------   tttatctttgggcattatgcggtatgtagaacttaatcaaacaagttaatcaaagattaaatttaatattctctattactaatctagttttttcttatgt  1758800                                        --------->AHL20(2)                                       <---------AHL20(2)                                       --------->AHL20(2)                                   <---------YAB1                                 --------->YAB1                          --------->AHL20(2)                                <---------YAB1                      <---------TOE2(3)                              --------->YAB1                       --------->YAB1        --------->AHL20(2)                              <---------ICU4             --------->YAB1  <---------AHL20(2)                              -------->HAHB4   --------->ZAT6      --------->AHL20(2) <----------DOF2 --TOE1(2)                   --------->ICU4--------->AHL20(2)   --------->TOE2(3) <---------GLK1(1)<- --TOE2(2)<---------CCA1(2)  <---------ATHB12<-----------GT1  <-------TEIL <-----------GT1   --------   ttttagttactcttatcttgaatcaaactaaatgattataaataaataaacactatatatcatattcattaatatttaaactagatttctttaaaatatc  1758900                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 ----                                             --------->AHL20(2)                                  <---                                             <---------AHL20(2)                                 <----                                         --------->AHL20(2)                        --------------->AGL15                                   --------->ANAC58                               ----------------->AGL3               <---------AHL20(1)<---------ANAC46                   ---------->DOF2<---------------AGL15               --------->AHL20(1)<---------ANAC58     ----------->GT1             <-----------------AGL3 -----ZmHOX2a(1)<---------AHL20(2) --------->ANAC58  <---------TOE2(3)           ------>MYB46(1)<---- ->RVE1(1)  --------->AHL20(2)   <---------ANAC58    <---------TOE1(3)           ------>MYB83   <----   aggactgagtcacattatatatttcataaacagtggcatgaaataatataaattcaaggtaatttggaactaaagaaatgaccaactatatatagatggc  1759000  Previous    Next  AGI:  At3g05890.1    Description:  RCI2B (RARE-COLD-INDUCIBLE 2B). Identical to Hydrophobic protein RCI2B (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05880.1); similar to Protein of unknown function UPF0057; Bacterial extracellular solute-binding protein, family 3 [Medicago truncatula] (GB:ABD33189.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) Range:  from: 1757637    to: 1758498    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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