Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------ATHB12                                                             ------>MYB83                                                    <------MYB83                                                    <------MYB46(1)                                        ------>ZmHOX2a(2)    ------>MYB46(1)              <-----------GT1          --------->At4g35610 <---------MYB59                    <------     <---------MYB52(1)<-----------GT1<---------ARR11(3)   <---------MYB46(2)            --------->DAG2   <---------ANAC58------>MYB46(1)    --------->ARR11(3)<-----------GT1                 ---------->DOF2   <---------ANAC58------>MYB83   --------->YAB1   <---------AtMYB61                <---------ATHB12 -->YAB1  <----------DOF2       <-----------GT1 --------->ALFIN1   <---------AHL20(2)--------->YAB1   aattttcgtttgctttaaaccaaattatccgaattaacatgatctgaaatgtgtaggtttaccaaacatttacttaaactttcccaatgaaaaagcttca  1756100                                                                                                   <x                                                                                            --------- --------->ANAC46                           ---------->DOF2                        <---------YAB1 --- --------->ANAC58                        ----------->GT1                        --------->ICU4   <--- --------->ANAC58<---------ICU4      ---------->DOF2               <---------At4g35610     ---------- -TEIL           --------->YAB1 --------->ZAT18                    --------->At4g35610<---------WOX13(1)   tacaagaaaactatatcaaaaatgactctgagagtgagccaaagggtaaagagagagagagagagagagagcttacaaggagatgatgatagatggtaaa  1756200                                       --------->ARR14(2)                                       --------->KAN4(2)                                       <---------ARR14(2)                                      <---------KAN4(1)                                      <----------TaMYB80                                   <------ZmHOX2a(1)                                 --------->LBD16                                 <---------TOE1(2)                                <---------LBD16    <---------ANAC46         <------ZmHOX2a(1)    ------>ZmHOX2a(2)    <---------ANAC58   <------MYB46(1)     <---------ARR14(2)          ----------->GT1 <---------ARR14(2)            ----   <------MYB83        --------->ARR14(2) --------->ANAC46        --------->GLK1(1)              <--- xxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->TOE1(2)   <---------ANAC58--------->ARR14(2)         ------- >At5g28300         <---------ANAC58  --------->KAN4(1)         --------->YAB1               <-------TEIL ------>ATHB12      <---------ANAC58 <---------KAN4(2)        ------>MYB46(1)   =================RAV ------ATHB12       <---------ANAC46 ---------->TaMYB80       ------>MYB83      ----------->RAV1(2) ->GT1   ============================HOX2a_HOX2a  <-----------------------TaNAC69(2) ----------->RAV1(1)   tcatttggtgaggacataaatggcgtatatgatcccaggaatatacccaagtagcgtcaaaaccaaacatatccaaaactcaacctgcaacaaaattcat  1756300         --------->AHL20(2)                                               --------->TOE2(3)      <----------DOF2 ----------->GT1                             <---------AHL20(2) ----->ATHB51      <---------ZAT6                                 --------->AHL20(2) ------ICU4        <---------ANAC46 ---------->DOF2           <---------TOE2(3) -->YAB1 <---------AHL20(2)  ----------->GT1          ---------->DOF2  <-----------GT1           <---   aatttcaacttttaatttctagtgtggataaatgtaaaaaaagaaccatatttgactaaagtataagattaattaaccaaaataaaactcagtctaaata  1756400                           --------->ARR14(2)                           --------->GLK1(2)                           <---------ARR14(2)                          ------>MYB83                          ------>MYB46(1)                        --------->AtMYB61                        ------->GAMYB                   --------->LBD16                  --------->ANAC46                  --------->ANAC58                                    --------->AHL20(2) --------->ZAT14                  --------->ANAC58                                    <---------ICU4   --------------                 <---------LBD16                                      --------->YAB1   --------------       ----------->GT1 --------->MYB46(3)                   <---------DEAR3(1)  ---------->DOF2      ----------->GT1 --------->ANAC58                    <------ZmHOX2a(1)    ------->GAMYB   <------ZmHOX2a(1)  --------->ANAC58        --------->ALFIN1 ----------->GT1--------->ANAC46 ------YAB1    --------->ANAC46   ---------->DOF2  <------NtERF2   --------->YAB1     --------->At4g35610   tgagaggaaagataaataccccgcaaccaaatctgagaaagacaccgagtggaggcaagaggatggcgataataatatcaacgaaagtagctgtactcat  1756500                                  <---------YAB1                                --------->YAB1                               <---------YAB1                              --------->AHL20(1)                              --------->AHL20(2)                            <---------AHL20(1)                            <---------ARR11(3)                  --------->GLK1(2)                                 --------->ZAT6      <---------ARR11(3)    --------->AHL20(1)                    <-----------GT1      --------->ARR11(3)    --------->ICU4    *TSS        <-----------GT1                 <---------ARR11(3) ->AtSPL8--------------------->WRI1 ---------->DOF2      <-----------GT1                  --------->ARR11(3) ->AtSPL3<----------DOF2    --------->ARR11(3)<------------CBF  <----------DOF2          <---------CCA1(2)   ttttctaagctctttgaaagtttctgagaaaatattataaaagcttcaaattgtgttttttatcttctttactctatcttcttcttgtgatatatctctc  1756600                                        <------------CBF                        <---------CCA1(1)                                          --------->At4g35610                        <---------RVE1(1)       -------->P                         <---------At4g35610                       --------->ARR11(3)     <---------SPL7            <----------DOF2                       <---------ARR11(3)    <---------DAG2 <---------AHL20(2)    <---------TOE1(3)                <---------DAG2       --------->ANAC58       <---------AHL20(1)  ---------->DOF2                <----------DOF2      --------->ANAC55(2)    --------->AHL20(2)<----------DOF2              ------>MYB83           --------->O2   <----------DOF2    --------->TOE2(3)           <-              ------>MYB46(1)        <---------ANAC55(2)<---------AHL20(2)   --------->TOE2(3)  <---- --------->AHL20(2)   <<<<<<<<<RAP2.2--------->ANAC58   <------------------------ANAC81      <------ZmHOX2a(1)   acattatatagagaccaactttttagatatttttgagccacgtattgccttaccctttttattttatttgtttcctttacctttaagctaaatgaggact  1756700                                                            --------->ANAC55(2)                                                           <-------TEIL    --------->MYB46(3)                                                        <------MYB83  <---------ANAC55(2)                                                        <------MYB46(1)  --------->ARR14(2)                                          <---------AHL20(2)<---------ANAC55(2)                                       ==============================================================                                       <-----------------AGL3         <---------ANAC58                                      <---------CCA1(1)<---------------AtSPL8               <-----------GT1        <---------RVE1(1)--------->MYB59--------->ANAC55(2)          <-      <----------DOF2                <---------ARR11(3)--------------->AtSPL8      <---------ICU4  --   <-----------GT1                   --------->ARR11(3)--------------->AtSPL3     --------->ICU4   -- -----------------------ANAC81     ----------->GT1 --------->ANAC58   <---------ANAC58         <----- ------DOF2<----------DOF2     ---------->DOF2     --------->ANAC58   --------->YAB1    <---------YAB1   ttgtttttcttttcttttttctacatacaaggcgaaagggatatttttttggcaagataggtacttaatctttcgtaaccactactaattagcattagga  1756800                                                       <---------YAB1                                                     --------->YAB1                                                     <---------ICU4                                                    --------->ICU4       <---------ANAC55(1)                          <---------YAB1       --------->ANAC55(2)                        --------->YAB1       <---------ANAC46                           -------->ATHB1       <---------ANAC58                           -------->HAHB4       <---------ANAC55(2)                        <--------HAHB4       <---------bZIP60(2)                        <---------ICU4       <---------ANAC58                           --------->ATHB51    <---------MYB52(1)               --------------->AGL15<---------YAB1   <-----------HVH21           <---------AHL20(2) <---------AHL20(2)                                < ====================================================MADS_MADS               <---------CCA1(2)     <- --------ARR14(2)             --------->AHL20(2) <---------ATHB51         --------->LBD16          <- ------->ARR14(2)         <------ZmHOX2a(1)      <---------YAB1     <---------ANAC58         <------- ------->GLK1(2)         ----------->GT1       <---------ICU4       <---------ANAC58     <----------DOF2 -ZmHOX2a(1)----------->GT1   <---------AHL20(2) --------->ICU4<-----------RAV1(1)--------->YAB1   --   gcatccgttacgtgttgaaaaaatgtaaggaaataaatagcatttttagtaattattattatgctatgttgccttccccatatatcatcatctttctttg  1756900                                                                                            <--------                                                                                           <---------ANAC55(2)                                                                                           --------->ANAC55(2)                                                                                           --------->ANAC46             ------->TEIL                                                                  <---------ANAC46             --------->SPL7                                                                <---------ANAC58             <---------ARR14(2)                                                            <---------ANAC58             --------->ARR14(2)                                                            --------->ANAC58           <---------SPL7                                                                  <---------ANAC55(1)          <---------ANAC58                                                                 <---------TGA2(1)          <---------ANAC58                                                                 --------->ANAC58       --------->ARR14(2)                                                                  <---------bZIP60(1)       <---------ARR14(2)                                         --------->TOE2(3)        --------->bZIP60(1) ----------->HVH21                                               --------->ANAC58          --------->TGA2(1) -----------HVH21                                                --------->ANAC46          --------->ANAC55(1) --------ANAC58                                                  --------->ANAC58       <---------ARR14(2) --------ANAC58                               <-----------GT1 XXXXXXXXXXXXXXXXXXXX>MIR857  ---------- ---DOF2 <-------TEIL          <<<<<<<<<<GATA-1             <---------AHL20(2)        <---------MYB46(3) ------->ANAC46  --------->LBD16          ------->TEIL     --------->AHL20(2)  --------->YAB1      --   tgcgtcacaggtccgtacccgtgtgatatcgacgataatacatgtatttatcaatttcaaattttatacgtcaaaagtttatcgtaagtggttacgtaac  1757000  Previous    Next  AGI:  At3g05880.1    Description:  RCI2A (RARE-COLD-INDUCIBLE 2A). Identical to Hydrophobic protein RCI2A (RCI2A) [Arabidopsis Thaliana] (GB:Q9ZNQ7); similar to RCI2B (RARE-COLD-INDUCIBLE 2B) [Arabidopsis thaliana] (TAIR:AT3G05890.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABD33197.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) Range:  from: 1755503    to: 1756546    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version