Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------------------WRI1                                                    <---------ANAC55(2)                                               --------->ATHB12 ------WOX13(1)                             <---------ANAC58 -->ICU4                                    <---------ANAC46                     <---------YAB1 ---YAB1             --------->ICU4         <---------ANAC58                     <---------TOE2(3)   tggatgagctagttgacaatgacatgagtagttgtgaagggaaatggcttgattacatgagagagacttacgaagaaggaattgagattgaagaagagat  1707500                                        <-----------RAV1(1)                                       XXXXXXXXXXXXXXXXXXXX>MIR863-5P                                    --------->YAB1                               ------>ZmHOX2a(2)            <---------AtMYB61                               ==================================HOX2a_HOX2a                             <---------ARR11(3)           ------>ZmHOX2a(1)                             --------->ARR11(3)        <---------ATHB12                            --------->YAB1            ------>MYB46(1)                          <---------TOE2(3)           ------>MYB83                        <---------AHL20(2)          --------->AtMYB61               ----------->GT1                        --------->AHL20(2) <---------MYB46(3)               ----------->RAV1(1)   tgtgtccgaattagttgatgacttaattaatgatcttatcatgtgttgttgacaccaatcctttggtcttcttctctccaacatgagagtgaaattgttt  1707600                                                                                           <---------YAB1                                     ----------->HVH21                            ---------->DOF2   <    <------ZmHOX2a(1)               <-----------HVH21                         <---------ANAC55(2)   -    ----------->GT1             --------->GLK1(2)                     ----------->GT1    <---------At4g35610   tctataggataaaaacaagattaggctgaactaaattctgtcacaggctgaactaaatttttatctctgaaatcgaaaatacttaaaagtcttctgatag  1707700                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               ------                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <---------ATHB12                                                                                         <xxxxxxxxxxx                                                                                        <-----------ARR10                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                          <---------ALFIN1--------->YAB1                                                                         <---------ZAT18<xxxxxxxxxxxx                                                                         --------->ZAT18<xxxxxxxxxxxx                                                                        --------->ANAC58<xxxxxxxxxxxx                                                                        --------->ANAC46<xxxxxxxxxxxx                                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxx                                                      --------->GLK1(2) --------->ANAC58<xxxxxxxxxxxx                                                     <xxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxx                                                  --------->HSFB2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<x                                            --------->ALFIN1   <xxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxx                                          <---------ANAC46    <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxx                                          <---------ANAC58    <---------LBD16        <xxxxxxxxxxxxxxx         ---------->DOF2      --------->AHL20(2)  --------->LBD16  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------->TEIL             --------->AHL20(2)   <---------HSFB2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)<x -------MYC3               --------->YAB1 <---------ANAC58   <---------LBD16  --------->ANAC46<xxxxxx ------>MYC3    <---------ANAC46  ---------->DOF2<---------ANAC46<---------PCF5     <xxxxxxxxxxxxxxxx   cacatgaacataaaagtgtcttatactaaaaataaaaaaagatggggtgttccgagaatcgaactcgggacctcgcgcacccgaagcgcgaatcatacca  1707800               *TSS             --------->ARR14(2)             <---------ARR14(2)       <---------ALFIN1      --------->MYB46(3)     ------>MYB46(1)     ------>MYB83   --------->AtMYB61   <---------MYB59 xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(se3) --->ZAT6--------->ANAC46 xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(l2) xxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(l2) xxxxxxxxxxxxsmallRNA(se3) xxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(le3) xxsmallRNA(le3)----------->GT1 xxxxxxxxxxxxxxxsmallRNA(si3)                                        <----------DOF2 xxxxxxxxxxxxxxxsmallRNA(se3)                                    --------->DEAR3(1) xxxxxxxxxxxxxxxsmallRNA(i2)                  <---------LBD16 <---------ALFIN1 xxxxxxxxxxxsmallRNA(le3)                  <---------AHL20(2) --------->AtMYB61 xxxxxxxxxxxxxxxsmallRNA(fl3)            <-----------TBP      --------->DEAR3(1)              <------ xxxxxxxxxxxxxxxsmallRNA(fl3)        --------->YAB1          --------->MYB46(3)             <-------- xxxsmallRNA(fl3)             <---------TOE2(3)            <-----------GT1         --------->GLK1(2)<   ctagaccaaacacccgatttgttaaatcgatagaggtaaacatatttatacggataacatatcaccaccgtctttatagggagagactctagttgtttgt  1707900                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                               ------                                                                                            ---------               <---------HSFC1(2)                                                           ---------       --------->ANAC58   <---------YAB1                                                    ---------       --------->ANAC58 --------->YAB1            ---------->DOF2                          <---------HSFB2a(2)      *TSS     --------->HSFC1(2)           ------>ZmHOX2a(1)                              --------->HSFB2a(2) ---MYB46(3)   <---------HSFB2a(1)   <-----------GT1                                   <---------ANAC58 -ANAC46       --------->HSFB2a(1)--------->MYB52(2)                                   <---------ANAC58 ---------At4g35610    <---------ATHB12  ------>ZmHOX2a(1)                             <---------ANAC46   tcatcggagacggaagaaaattcgaatcatcagtgtttgtttcctcctctcttaaagcttagcccttctcaggtcattgttcttcaatggcttcgagcaa  1708000                                                               <---------ANAC58                                                    <---------ARR14(2)    --------->ANAC58                                --------->ARR14(2)    --------->ANAC58                                --------->GLK1(2) --------->At5g28300                                ------->TEIL ------->ANAC58                                  --------->ANAC58 ------->ANAC46                                  <---------ANAC55(2) ------->ANAC58                                  --------->ANAC58 ------ALFIN1 --------->MYB52(2)                 --------->ANAC55(2) ----->RAV1(1)<---------MYB46(3)               --------->CCA1(2)                            --------- >ANAC58    <---------MYB52(1)                --------->ARR14(2)                           <--------P >ANAC58  --------->ANAC46                    <---------ARR14(2)<----------DOF2           <-------GAMYB >ANAC46 --------->SPL7                --------->ATHB12        <---------ANAC58          <---------ANAC46   cacggtaagcatacggtagtttctctagttttacttagggtttattgggatacgaatctgagattgctttctgtgtttttgtagactactggggttgata  1708100                                                <---------DOF5.7(2)                                              --------->DOF5.7(2)                                         <---------ZAT2                                       --------->ZAT18                                       <---------ZAT18                                      <---------ANAC46                                      <---------ANAC58            <-----------GT1                     --------->ALFIN1 <---------ANAC58       <---------HSFB2a(1)               ------                   <---------ANAC46<------ZmHOX2a(1)         --------->HSFB2a(1)              ------>ZmHOX2a(2) -->GT1---------->DOF2           <---------TOE2(3)     ---------->DOF2           <-----------GT1 <---   atacgtttagaaagaagtttgatgtggaagagtttaaggagcgtgctcgtgaacgcgaaaagaaggtttcactctctccaatttcacaatctctgatctg  1708200                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                     <---------ARR14(2)                                               --------->ARR14(2)      <---------ZAT14                       --------->GLK1(2)       <---------ARR14(2)     <---------REM1(1)              ---------->DOF2                 ================HOX2a_HOX2a                         <--    <-----------GT1    --------->ARR11(3)     ===============HOX2a_HOX2a   ----------->GT1       <--- ----->GT1  <---------YAB1    <---------AHL20(2)     --------->ARR14(2)--------->ZAT14           <--- ------MYB52(1)  ----------->GT1              <------ZmHOX2a(1)       --------->ALFIN1          <----   ttaatttttcgattttgaaagctaaaatctgttttattccatgatgcaggaatcggatcggtctaaatctcggtgtagggtttctacttatctgatttta  1708300                                      ------>NtERF2 ------>ZmHOX2a(1)                          <-------GAMYB           ----------->RAV1(2)                               < -------At4g35610        --------->ALFIN1        ------>ZmHOX2a(1)                         <---------ETT(2) ------TOE2(3)         <---------ANAC58      <---------ARR11(3)                            --------->ETT(2) ------TOE1(3)         <---------ANAC58      --------->ARR11(3)    <----------DOF2   <---------YAB1 - -------GT1            <---------ANAC46  ---------->DOF2 ---------->DOF2         <---------GLK1(2) <-   agcttatctagatgaaatttaagtagggtgttgtttttgcagccaaaggtcctcctgtgcaaagagcccctttgaagcatagagattatcatgtagacct  1708400  Previous    Next  AGI:  At3g05750.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17458.1); contains InterPro domain Homeodomain-like (InterPro:IPR009057) Range:  from: 1704126    to: 1707684    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g05755.1    Description:  pre-tRNA. tRNA-Pro (anticodon: CGG) Range:  from: 1707744    to: 1707815    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05760.1    Description:  nucleic acid binding / zinc ion binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO17452.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604) Range:  from: 1707906    to: 1710044    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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