Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->At4g35610                                    ------->TEIL                             --------->ZAT2              ----------->HVH21                             <---------ZAT2            --------->ANAC55(2)                          --------->LBD16           ==============================HOX2a_HOX2a            <---------O2<---------LBD16             <------ZmHOX2a(2)        --------->GLK1(2)<------NtERF2       --------->CCA1(2)                         <----------DOF2   ---------->DOF2   <-----------HVH21   <---------TOE2(3)               <---------TOE2(3)        ---  --------->AHL20(2)--------->bZIP60(2) ---------->DOF2<---------ANAC55(2) <------ZmHOX2a(1)      <--   tcaataaaagaatcaagtggccatgtccccgagctacgaagctaaagttatgggatcaagtgacctctatagatttaggaaaatgacctcttttcagaat  1697700                                                                      --------->DAG2                                                              --------->AHL20(2)                                                             <---------ATHB12                                                         --------->LBD16  --------->AHL20(2)         --------->ZAT14            --------->ANAC46                          ---  <---------AHL20(2)   <-------TEIL                 <-----------GT1  ---------->DOF2  <----------DOF2 ------>AHL20(2)   --------->DAG2            <---------AHL20(2) ---------->DOF2    <---------ALFIN1 < -------AHL20(2) ---------->DOF2            --------->AHL20(2)--------->YAB1 <---------PCF5 ---------   ttaaataaatatcagaaataaaaggttcaagtttactcgttgaattttaaattttttcccccaataaaaagaaaagttgggaccccaactttcttcattt  1697800                                                <---------ANAC55(2)                                                --------->ANAC55(2)                                <---------CCA1(2)           --------->ANAC46                             --------->LBD16    <---------ANAC58                             ------>NtERF2      --------->ANAC55(1)--------->LBD16                            --------->ANAC46    --------->ANAC58  ------->GAMYB                  --------->ARR14(2)            --------->ANAC58 <---------LBD16                  <---------ARR11(3)            <---------ANAC58-------->P    --------->AHL20(2)   -------->P    --------->ARR11(3)   --------->ANAC58    <---------AHL20(2)  <-----------GT1<---------ARR11(3)   --------->ANAC58                        < ------->ID1      <---------ARR14(2)   --------->ARR14(2) ---------->DOF2                         --- ----------DOF2  <---------CCA1(2)    <---------CCA1(2)  --------->YAB1                         ----- >ATHB12    --------->PCF2 ------->GAMYB        --------->ANAC46--------->MYB52(1)       --------->GLK1(1)   gtctttttaatttggacccatatattcaacccgcctatctatatcttcttacgtaacaataaaagcaaccggattacattgtaagaaccagaaatcaaac  1697900                                         --------->ARR11(3)                                         <---------ARR11(3)                       <---------------AGL15                            --------->ANAC58                       --------------->AGL15                        --------->YAB1       <---------WOX13(1)  ---------->DOF2                       <---------GLK1(2)     --------->ATHB12    <---------AHL20(2)----------------->AGL2                   ------->GAMYB ------>ZmHOX2a(2)    --------->AHL20(2)<-----------------AG<---------YAB1     --------->At4g35610      <---------YAB1 ---------ANAC46      <-----------------AGL1            <---------MYB46(3) <---------ARR14(2)       < ------>LBD16<---------ATHB12           --------->GLK1(1)  --------->ETT(2)--------->ARR14(2)       - ---->DEAR3(2)        ----------------->AGL1          <---------MYB52(1)--------->ANAC58          ---   cggcgtttaattgaaatcaattgaaccagaaaaggaaaaccgatatcatggaaaccggttgtcaacagaatcacaaggatcggagaagattattgaatcg  1698000                                                                      <------NtERF2                                                                     --------->LBD16       --------->ANAC58                                                                    <---------ANAC46       --------->ANAC46                                                                   <---------LBD16         --------->ANAC58                                                         <---------ANAC58                 --------->LBD16                                                         <---------ANAC58                 <---------LBD16                                                         <---------ANAC46                <---------ANAC58                                                         ----------->GT1                 <---------ANAC58     --------->At4g35610                                 <---------ANAC55(2)             <---------ANAC46     <---------At4g35610                            <---------ANAC58<---------ANAC58    <---------LBD16 ---------DAG2                                      <---------ANAC58>>>>>>>>>>E2Fa <---------YAB1 -------->TOE1(3)                                   <---------ANAC46<---------ANAC58 <------------CBF ---->TEIL           ---------->DOF2        --------->MYB52(1) <------------CBF<------------CBF   ---   caccttaagctggacttgagcctgaaagcccatatgtaagaaaatgaaacggtagcgtttcgtaaaattggcgggaaaatgaattgttattgcgcggaag  1698100                                                                  --------->ZAT14                                                                  <---------ZAT18                 ---                                                              --------->ALFIN1                   ----                                                        <---------LBD16                         <----                                                       --------->MYB52(1)                      <-----                                                       <---------DOF5.7(2)                     ------                                                     <---------MYB52(1)                        <-----                                                     --------->DOF5.7(2)                       ------                                                    <-------GAMYB --------->ZAT18              <-----                                                    <-----------HVH21                          ------                             <---------DEAR3(1)    <---------ANAC55(2)                         <-----                  --------->AHL20(2)               <---------ANAC58                      --------->ARR11(3)                  *TSS<---------AHL20(2)           <---------ANAC58                     =============            <---------At4g35610  ----------->GT1   --------->ANAC55(2)                  =============            --------->At4g35610<------NtERF2    ------------>MYB.PH3(1)                 <------ZmHOX2a(1)    ---------->DOF2  <---------YAB1           <---------ICU4<---------ANAC46       <---------REM1(1) ------>ZAT18   <---------ARR14(2)        ----------->GT1 --------->LBD16  <----------DOF2<------ZmHOX2a(2)   ggctctaaaagttcagcagatttattaatcgtcgtcggaaaaaatcgataattccgttaccggagtggagcactcgtctttgaagatgaaggatcaagat  1698200                                                                       <---------ANAC46           <---------HSFC1(2)                                          <---------ANAC58           --------->HSFC1(2)                                          <---------ANAC58           <---------HSFB2a(1)                            --------->TOE1(2)           --------->HSFB2a(1)                          --------->GLK1(2) ------>HSFB2a(2)                                      <---------GLK1(2) -->ZmHOX2a(2)                                         --------->ARR11(3)                        <--- --ZmHOX2a(2)                                          <---------ARR14(2)                      ------ ----AGP1---------->DOF2                               --------->ARR14(2)                    <------- --->ARR14(3)                                         <---------HSFC1(2)                   <--------- ----ARR14(3)                               <---------ARR14(2)    <---------ARR14(2)      ------>ZmHOX2a(2) --->ARR14(2)                               <---------GLK1(2)     --------->ARR14(2)      <---------ICU4 ----ARR11(3)                               --------->ARR14(2)  ----------->ARR10       <---------ARR11(3) --->ARR11(3)                         --------->ZAT2  --------->HSFC1(2)--------------------->WRI1 ----ARR14(2)                 --------->STY1(2)       --------->HSFB2a(1)         <-------TEIL ------ ==HOX2a_HOX2a      --------->YAB1 ---------->DOF2    <---------HSFB2a(1)     ------>ZmHOX2a(2)------ ===HOX2a_HOX2a    --------->AHL20(2) <---------ZAT2 ----------->ARR10--------->ATHB12  --------->ARR11(3)   ctcgaattggagaaagttcgattaataagcctagctacaaagctcggattcgacgaagattctgcgaagaaatgcttggatcgattcgtcgatctttacg  1698300                                                       --------->ICU4                                                     >>>>>>>>>GT-2 <---------MYB59                                  --------->LBD16 ------SPL7                                       ----------->GT1                            -------- --------->AtSPL3                                <---------ANAC46                          ---------- ----GT1                                    --------->ATHB12                        <------MYB46(1) -DOF2           --------->ARR11(3)  --------->YAB1--------->At5g28300              <------MYB83   -- --->ANAC46 <---------ATHB12--------->TOE2(2)   <---------LBD16                    <---------AtMYB61 --------->AtSPL8<---------ARR11(3)  --------->ANAC55(2)   <---------ZAT6          --------->MYB59 <-   gtaccaaaattcaaatcaagattttagaaacctatgctctcgtaatcgattgcggtaattagtgtttttttttttgtctgtgtgtttggtcttaaaaggt  1698400                                                         <---------At4g35610                                                         --------->At4g35610                                                         <---------ZAT2                                                      <---------MYB52(1)                                                      --------->DOF5.7(2)                                                     <-----------HVH21                                                    <---------ANAC46                                                   <------NtERF2                                                   ------>NtERF2                                                  <---------RAP2.3(1)           <---------GLK1(1)                      --------->LBD16           --------->GLK1(1)                     <---------RAP2.3(2)      <---------LBD16                            <---------DEAR3(1)   <---------MYB46(3)                            <---------RRTF1(2)  <---------AtMYB61                          <---------ANAC58 ->DAG2 <------NtERF2                        <---------ANAC58                    <------ZmHOX2a(1)--- >DOF2--------->ETT(1)              <---------At4g35610 --------->MYB52(2)     <---------TOE2(3)  --- ------->ICU4                   --------->ALFIN1 <---------RAP2.3(3) <------ZmHOX2a(1)            --- --------YAB1                 <---------ANAC46  <---------LBD16    <---------TOE2(3)        ---------   gatgatggtcgggatttcatcactgttgagttatgtggagatgattttcttgcggcgttagctgattttgaggaaggaactgaggaatgggatgatatac  1698500                                                                                            ---------                                                                                           <---------YAB1                                                                                           --------->ICU4                                                                                      --------->YAB1                                                                                     --------->ICU4                                                                                     <---------YAB1                                                                                  <---------YAB1                                                                      <---------GLK1(2)  --------->YAB1                         >>>>>>>>>SARD1                               --------->ARR14(2)<---------YAB1                         >>>>>>>>>CBP60g                              <---------ARR14(2)--------->ICU4 ------>ANAC46     --------->ANAC58                              --------->MYB52(1)--------->YAB1 ------>ANAC58     --------->ANAC58                           --------->YAB1      --------->ICU4 ------>ANAC58--------->At4g35610                            <---------ZAT6     --------->YAB1------- >CCA1(2)     <---------At4g35610   --------->ICU4        ------>ZmHOX2a(1)    --------->ICU4 <------   aggctatagagtctgaagctcaaggaaatttggctgaaatgtttgataaatctactaatcctagtgataacggattcgatactgatgatgatgatgatga  1698600  Previous    Next  AGI:  At3g05740.1    Description:  RECQI1 (Arabidopsis RecQ helicase l1); ATP-dependent helicase. similar to ATRECQ4A/ATSGS1/RECQL4A, ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G10930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73069.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17459.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96790.1); contains InterPro domain DNA helicase, ATP-dependent, RecQ type; (InterPro:IPR004589); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro Range:  from: 1698118    to: 1701405    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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