Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <------------CBF     <---------AHL20(2)     --------->AHL20(2)                                           ----------->GT1     --------->AHL20(1)                                    <---------AHL20(2)     <---------AHL20(1)                                    --------->AHL20(2)    --------->AHL20(2)                                    <---------AHL20(2) ---------ANAC46                                       --------->AHL20(1) ----ANAC58                                            --------->AHL20(2) ----ANAC46                                            <---------AHL20(1) ----ANAC55(1)              <---------AHL20(2)       --------->AHL20(1) ----ANAC58  ------------>CBF        --------->DAG2  <---------AHL20(2)                  --------->ICU4 --->ANAC55(2)            <---------YAB1          --------->AHL20(2)                     <---------YAB1 ----ANAC55(2)       <----------DOF2---------->DOF2  <---------AHL20(1)             ------>ZmHOX2a(1)   tgtcgaataaattgggccaatagcttttattattttgaaaaagttcacattataaaatattttaaatattgtatatatacacattcctgtgattatggtg  1692100                 <---------ANAC55(2)          <---------ANAC46                                                     <---------AHL20(2)   <          <---------ANAC58                                          <---------ANAC58          -------          ----------->GT1                 --------->TOE2(3)         ----------->GT1          <<<<<<<<          <---------ANAC55(2)             --------->TOE1(3)         <---------ANAC58         <-------          <---------ANAC58                --------->YAB1            <---------ANAC46         <<<<<<<<          --------->ANAC55(2)          <-----------GT1       <---------------AGL15         --------->WOX13(1)     --------->ATHB12                  <<<<<<<<<GT-1    <----------DOF2      ----------->GT1 <-------     <---------ICU4              ----------->GT1      <---------ANAC58       --------->ANAC55(2)    -    <---------YAB1             ---------->DOF2        <---------ANAC58       <---------ANAC55(2)   <-   agtttgatgatttcgtaatacataaaacagaagaaaagtattaaccataacaaattgcctttgctaaattgtgtgaattatgtaattttaagacaatcat  1692200                                                       <---------LBD16                                                   <---------GLK1(2)                                                   --------->KAN4(2)  --------->ZAT18                                  <---------ARR14(2)  <---------ZAT14                                  --------->ARR14(2)  --------->ZAT14                                 <---------HSFB2a(1)  <---------ZAT18                                 --------->HSFC1(2) ---------ZAT18                                   <---------HSFC1(2)--------->ANAC58 -->YAB1                                          --------->HSFB2a(1) <ARR2                                           ----------->ARR10  ----------->GT1<---------ARR11(3) --ATHB12                                --------->MYB52(1)         --------->ANAC58 <ARR1                                  ----------->HVH21          --------->DAG2  <-----------ARR10 --YAB1    ------>ZmHOX2a(1)           --------->LBD16 ----------->RAV1(2)         <---------ARR11(1) -------->ZAT18                       --------->ANAC55(2)         ---------->DOF2  --------->ARR14(2) --------ANAC46   --------->AtLEC2    <---------ANAC55(2)--------->LBD16          <---------CCA1(2)   agtgtgcacagtccttgatcatgcattatctgagcatagtccgtaacagagaagattccctgagctagaaaagcaaaatagaccatatctatctataagt  1692300                                                                        --------------->AGL15                                                                        <<<<<<<<<<<<<AGL25                                                                        <---------------AGL15                                                                       ----------------->AGL3                                         ----------->GT1               <-----------------AGL1                                        --------->DAG2                 <-----------------AGL2                                       ---------->DOF2                 <-----------------AGL3                              --------->TOE2(3)                     <----------DOF2                            --------->ARR11(3)                   <-----------GT1       --------->ALFIN1     <---------ARR11(3)                  <<<<<<<<<<GT-3b    --------->DAG2          <-----------ARR10          ---------->DOF2 ----------------->AGL2   ---------->DOF2         <---------CCA1(2)  <---------YAB1  <---------YAB1              <---------REM1(1)   caagataaagtgttgtattttgtatagacatatcttagttgaaaagttattcttcgtaaaagttatttttctttctatttttggtcattttgttgtaacg  1692400                                                          <---------YAB1                         ----                     --------->LBD16                    --------->YAB1               ----------->TBP                    --------->DEAR3(1)            <----------DOF2     <---------ANAC46           <---                   --------->ANAC46            --------->ARR11(3)     <---------ANAC55(2)        ----                 <---------ALFIN1              <---------ARR11(3)     <---------ANAC58           <---             <----------DOF2         --------->LBD16  <-----------GT1 --------->ANAC55(2)     -------          <-----------GT1  <-----------GT1   --------->ANAC58         <---------ANAC58 ---------->DOF2    <---------AHL20(2)  <----------TaMYB80   --------->ANAC58         <---------ANAC55(1)  --------->YAB1   aagtttttattttgactttccaccgcatattacctcttccgaaatacaagctctttaaacatcatagagattacgtttttttggaatataaaagcataat  1692500                                                                                 ====================                                                                                 ------>ZmHOX2a(2)                                                                                 ====================                                                                                <------ZmHOX2a(2)                                                                                =====================                                                                      ------>ZmHOX2a(1)                                                                      ==================HOX2a_HOX2a                                                                      <---------HSFB2a(2)                                                                      =================HOX2a_HOX2a                                                                      --------->HSFC1(1)                                ----------->GT1                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               ----------->GT1            --------->GLK1(1)     ===================== ----->AHL20(2)             --------->DAG2                <---------GLK1(1)    <---------ARR11(3) ------AHL20(2)    <------ZmHOX2a(1)                    ================================HOX2a_HOX2a ----->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <------ZmHOX2a(1)      --------->ARR11(3) ------AHL20(1) *TSS       --------->DAG2               ===============================HOX2a_HOX2a <- -->YAB1 ---------->DOF2  ---------->DOF2          --------->ALFIN1   --------->HSFB2a(2)      <xxxxx   aaaatgaaaacaaaagagttaggagagaaaaagggggaaaaaaaaaaaacgagatggaggaattccaatctcctagaatacgatcttacaaatcgtatga  1692600               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxsmallRNA(s)         --------->MYB46(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->CCA1(2)                                                             <---------ATHB12   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <------NtERF2 ============HOX2a_HOX2a   ------>ZmHOX2a(1) <---------WRKY12               --------->ANAC58 =====HOX2a_HOX2a      <xxxxxxxxxxxxxxxxsmallRNA(i)                  --------->GLK1(2)------>ZmHOX2a(2) ============HOX2a_HOX2a   xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------RAV1(1)--------->ANAC58 =====HOX2a_HOX2a  <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->CCA1(2)     --------->RAP2.3(1)   xxxx -----ZmHOX2a(1)  ----------->GT1          <-----------HVH21        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(2)----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   aggagataggaacctccaactggttaatcctgcagatttaaaactggtcagagggatatatgttgttagagaatcgaggcgcaatcgatctccgataaaa  1692700                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                  --------->ARR11(3)                                                  --------->ARR14(2)                                                  <---------ARR14(2)                              ---               <---------ARR11(3)                 <---------ARR11(3)                              <--           <------NtERF2                          <---------ARR14(3)                              ---          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-----------ARR10                               ---         <---------ANAC46            <---------MYB52(1)                                   <---------AHL20(2)  --------->CCA1(2)                 <-----------HVH21      <---------YAB1                <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ----------->ARR10                        --------->AHL20(2) --------->ARR11(3)                 <-------GAMYB --------->ARR14(3)                   --------->YAB1 <---------ARR11(3)     ---------->DOF2     <---------HSFB2a(2)               ----------->GT1    <xxx xxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxsmallRNA(s)                <---------TOE2(3)-------   acagatatatggcgcaagatgtcttacaaagacatgcccgttagaccgagaagatcttcttctcattcgacattgttcaaaggtaactaaaataaatgaa  1692800             --------->ZAT18     <---------WOX13(1)  <---------AHL20(2)                      <---------WOX13(1)                            --------->ANAC58 ------>AHL20(2)                        --------->ATHB12     --------->ICU4             --------->ANAC58 -------AHL20(2)               <---------ANAC58              <---------YAB1             --------->ANAC46 ------>ATHB51                 <---------ANAC46   ----------->GT1     <---------ZAT6<-----------GT1 ------>ATHB12            <-----------RAV1(1)    ----------->GT1 --------->YAB1 --------->CCA1(2) xxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------YAB1      ----------->GT1     --------->ARR11(3) -->AHL20(2) <---------ZAT18   <---------ANAC58---------->DOF2  <---------YAB1 <---------ARR11(3)   ttatttgattaatagcgcacatctaaaattgttgcttgcatttgattgcaaaagttaaaaatagtgattatagtggtataagatataaacaagtcatttg  1692900                                          --------->YAB1                                          <--                                          --------->TOE2(3)                                       ---                                         ----------->GT1                                    <--------                                         <---------ZAT6                                     <--------                       <-----------GT1------>ZmHOX2a(1)                                     <--------           --------->YAB1           --------->YAB1                                          <--------           --------->AHL20(2)   --------->ICU4                <---------TOE2(3)             ---------       --------->AHL20(2)     --------->YAB1                 --------->YAB1             <---------ANAC58       --------->AHL20(1)  --------->ANAC58       --------->ALFIN1                <---------HSFB2a(1)       <---------AHL20(2)  --------->ANAC46       <---------ANAC46     <---------YAB1   <---------ANAC58      --------->AHL20(2)   --------->ANAC58 <---------YAB1--------->YAB1          --------->ICU4 ----   tgttcaaaattaattatacacatataaacaagtcataatcctaatgttaattgtggggatttataatgtttttaatattgtggaatgtttgtttgcgtaa  1693000  Previous    Next  AGI:  At3g05725.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G47480.1); similar to unknown [Populus trichocarpa] (GB:ABK95751.1) Range:  from: 1692516    to: 1693336    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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