Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------ZAT2                                   --------->ZAT2                                   <---------At4g35610                   ------>ZmHOX2a(1)                                --------->At4g35610                     <---------ALFIN1                             --------->ZAT2                           ------>ZmHOX2a(1)                             <---------At4g35610               ==============HOX2a_HOX2a                             <---------ZAT2                    ====================HOX2a_HOX2a        <-----------RAV1(2)  --------->At4g35610               =================HOX2a_HOX2a     --------->ANAC58       <-----------RAV1(1)                ------>ZmHOX2a(2)     --------->ANAC58       ------>ZmHOX2a(1)                 =====================HOX2a_HOX2a  <----------CDC5         ----------->RAV1(2)                 ==================HOX2a_HOX2a -------->ANAC58          ====================RAV             ===============HOX2a_HOX2a -------->ANAC58         ------>NtERF2--------->At4g35610     <------ZmHOX2a(2) -----NtERF2           <---------ANAC58                      <---------AGP1 ------->ZAT18         <---------ANAC58                      --------->AGP1 ------>ZmHOX2a(1) ---->NtERF2     <---------TOE1(3) --------->At4g35610       <---------ARR11(3) ------DEAR3(1)  <---------TOE2(3)----------->RAV1(1)        --------->ARR11(3) ------RAP2.3(2) <---------YAB1 <---------At4g35610       --------->HSFB2a(2)                <------- -ICU4  ================================RAV               <---------HSFB2a(2)                --------   ccgcgctaagccaggttttaagattgcctcctgctgcagcagcatcgtgagagccatcgtctagatctattcctcctcctccatggagtttgttcatctc  1631400                                       <---------ARR11(3)                   <-----------HVH21   --------->ARR11(3)                                         <--         --------->AtLEC2            --------->ANAC58                                            <---   --------->MYB46(3)                --------->ANAC58                     --------->MYB52(1)   <-----   --------->DEAR3(1) <---------At5g28300 <----------DOF2             --------->ANAC58        <------ --At4g35610   <---------AGP1      ---------->DOF2                    --------->ANAC58    <---------ICU4 ->At4g35610  <---------ZAT2      <---------REM1(2) ------>ZmHOX2a(1) --------->ANAC46   <---------YAB1   cagcatcgaccatgctagctctgttaccgagaagcctacaagctctttgcaatcctctatggcaacttgctcacgcgaacggatagataacatcattacc  1631500                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                      --------->ANAC58                           <---                                                      --------->ANAC46           ----------->HVH21                                                      --------->ANAC55(1)       --------->LBD16  <---                                                      <---------ANAC55(2)       <-----------HVH21<---                                                      --------->ANAC58         --------->ANAC55(2)                                                      --------->ANAC55(2)      <---------ANAC55(2) --                                                      ----------->GT1          --------->ANAC46  ----    --------->GLK1(2)                        <---------At5g28300           <-----------GT1       <---   <---------GLK1(2)                      <----------DOF2            --------->LBD16             <--- -------MYB52(1)                  ------->MYC3      <---------ALFIN1<---------ANAC58          ------- ----GAMYB                        <-------MYC3     <---------ZAT2   <---------ANAC46        <-------- ----TOE2(3)                 <-----------HVH21  --------->LBD16     <---------ANAC58        <-------- ---At5g28300             <----------DOF2--------->TOE2(3)         <---------LBD16      <---------GLK1(2)   gttgggattctttccattgctaacttggctttgtcatgtgcttcctttaccgcagcacgtaaaaccgaatgcgggtttaacccgtgacccgattccttga  1631600     <---------HSFB2a(2) ------bZIP60(2) ------ANAC58 ----->O2 ------ANAC55(1) ------ANAC46 ------O2                                               <---------HSFB2a(2) ------->ALFIN1                                         --------->HSFB2a(2) ----->TGA1a                                        <----------DOF2 ------TGA1a                                       <---------ANAC58                      ----------->GT1 ------ANAC58                                  <---------ANAC58                   --------------->AGL15 ---->HVH21       --------->ANAC58             <---------ANAC58                   <----------DOF2 -ANAC58          --------->ANAC58      --------->AHL20(2)                  --------->ARR11(3)  <---- -ANAC58<---------ARR11(3)          ----------->GT1<---------ANAC58   ---------->DOF2 <---------AtLEC2   cgtgtgtccagatgttagagacgcacaactcgtgagcatcgataaattggcatgctttcgcgacaagagaccgaaagttatcttctttgtatggttttaa  1631700                       <---------ZAT14                <------ZmHOX2a(1)                        <---------MYB46(3)         <------MYB46(1)            <---------TOE1(1)                           --------->ALFIN1            <------MYB83 <---         --------->TOE1(2)                              <---------AtMYB61          --------->MYB59  <---------TOE2(3) --------->ALFIN1       --------->MYB52(1)             ------>ZmHOX2a(1)      <--- -----YAB1  <---------TOE2(1)       --------->YAB1   <---------DEAR3(1)   --------->LBD16        ----   aattgtggtttcatacgaggaagtgtgaacggacataagcataactaagagaagagcggtggtaatccccattttcctgataagtttggtttttttgttt  1631800                                                                                 <------MYB46(1)                                                                                 <------MYB83                                                                                 <---------MYB46(3)                                                                             <---------MYB46(3)                                     --------------->AGL15                   <-----------RAV1(1)                                     <---------------AGL15                  <---------WOX13(1)                                    ----------------->AGL2                 <------------CBF                                    <-----------------AGL2                --------->ATHB12                                    ----------------->AGL3               <---------YAB1                                    =================================================================                                    <-----------------AGL3               --------->ICU4                                  --------->ANAC58                     <------------CBF      ---------->DOF2   ---------->DOF2<-----------TBP              --------->ANAC55(2) ------TOE2(3)     --------->ICU4 --------->ANAC58                 --------->MYB59 ------TOE1(3)   ---------->DOF2---------->DOF2                    <---------TOE2(3)                - ----->MYB59---------->DOF2--------->DAG2   ----------->GT1        <---------TOE1(3)            <----   aggttagcaaaagaaaaagaaaagatgaaagagtgaaagccatatatagaaaaaaaaactagggaagtttaggtattgattgttggtgaagaaatgttct  1631900       --------->HSFB2a(2)                <-----------GT1    <----------DOF2                   --------->AHL20(2) --------------->AGL15            <---------AHL20(2)                --------->ANAC46 <---------------AGL15            --------->AHL20(2)                --------->ANAC58     <----------- ================MADS_MADS      <----------DOF2        <-----------GT1  ---------->DOF2  ------------ ---------------->AGL1          --------->TOE2(3)<----------DOF2    --------->ANAC58    --------->ATHB12 ------DOF2       <------ZmHOX2a(1)   <---------AHL20(2)    <----------DOF2    <---------YAB1    <---   ttgcctctttgagaactgtaggaacaaattcaaactttaattttttaccttcttttgttactcttttctcaagccaaagttattctttcttcattgttca  1632000                                                                                           <---------ZAT6                                                                                         <-------TEIL                                                                                         <---------ZAT14                                                                                         --------->ZAT14                                          >>>>>>>ZML2                                   ------------>AtMYB77                                 <----------DOF2                                    <---------LBD16 -CBF  ------------>CBF        <---------At4g35610      --------->ANAC46        <-----------HVH21 --------->WRI1            --------->GLK1(2)            <---------ALFIN1       <----------DOF2 <----- ------CCA1(2)            <---------GLK1(2)      <----------DOF2------>ZmHOX2a(1)----------->HVH21   aatctctcattcaatgctctctaaactagattctgcttctagttctagcgacttttacacaccctcctagcctccaaatagctttcaccggtacagttac  1632100                                   --------->ANAC46                                   --------->ANAC58                      -------->P                               --------->MYB46(3)                        --------->MYB52(1)                      <---------YAB1         --------->ANAC58          --------->MYB46(3)                    <-------TEIL   --------->ANAC58            <---------ANAC46                 --------->LBD16--------->DEAR3(1)          ----------->TGA1             -------->P  <---------WOX13(1)  --------->ANAC58--------->MYB52(1) ----At5g28300 <---------LBD16 --------->DEAR3(2)           ----------->HVH21       <----------DOF2   agtattatctaatcttacccggttcagattgaaaccgacgcaatctcaagtaaaccgatagaatgacgggagaacaaccggttgagcttttggagtttac  1632200                                                                         <-----------ARR10                                                                         --------->ARR14(2)                                                                   <-----------GT1                                                                 ---------->TaMYB80                                                             --------->LBD16              <---------ANAC58                                      <-------TEIL  <---------AHL20(2)   <---------ARR14(2)                        --------->TOE2(3)          --------->AHL20(2)  --------->LBD16    *TSS             <---------ANAC58      <---------MYB46(3)       <---------LBD16   <---------At5g28300             <---------ANAC58   <------------CBF----------->GT1  <---------KAN4(2)<---------MYB52(1)          <----------DOF2    >>>>>>>>>>>>>>>>>LFY  <---------AHL20(2)<---------LBD16      <---------ANAC58       <-----------GT1<---------AHL20(2)   ---------->DOF2 <---------LBD16   <-----------GT1   atcggtttattactttcttgttattttcttaacccattggttcatcaaagtgattaaataaaccgggattatccggattttaccgctacgttccttccct  1632300  Previous    Next  AGI:  At3g05620.1    Description:  pectinesterase family protein. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G43270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17503.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 1629664    to: 1631772    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05625.1    Description:  binding. similar to TPR repeat [Medicago truncatula] (GB:ABD28339.2); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 1632290    to: 1634145    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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