Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ---------->DOF2                                 --------->YAB1                                --------->ICU4                                                   ----                         <---------ANAC46                                              ----------->GT1                         <---------ANAC58                                             <---------ZAT6                   ---------->ID1<---------ICU4                       --------------->AGL15     -----  <----------DOF2<-----------RAV1(1)--------->YAB1                   ------>MYB46(1) <---------WOX13(1) ----------GT1<----------DOF2 --------->YAB1                         ------>MYB83   <---------ANAC58 ---DOF2    ------->TEIL <---------ANAC58  ----------->GT1         <---------ALFIN1 <---------ANAC58   ttttctttgtcatgaacttttgttgtttcgtttaataatcaaaagttgtataatctaagtttgggattaccaccctattgagtattgagtgataaaaaaa  1595000          --------->ATHB51          <---------ICU4    --------->LBD16   <---------ANAC55(2)   <---------ANAC46                                    --------->TOE2(3)   --------->ANAC55(2)                              <---------ARR14(2)   <---------ANAC58                                <---------CCA1(2)   <---------ANAC55(1)           --------->YAB1  --------->AHL20(2)   ----------->GT1      <---------WOX13(1)       <---------AHL20(2)                             <----   <---------ANAC58    <---------ANAC58    --------->ANAC55(2)                                 <-----  <-----------------------TaNAC69(2)  <---------ZAT6--------->ARR14(2)                      ------->TEIL ----->DAG2            <---------ANAC58    <---------ANAC55(2)     ------->TEIL        --------->CCA1(2) ----->DOF2<-----------GT1   <-------TEIL<-----------GT1------>ZmHOX2a(1) --------->GLK1(2) <--------   aagttgcgtgaattatcgccctattgagtgatacatcatagtattacatatttatatcctcagaaaatggaccgagaatttttatcaagagatgaatatt  1595100                <---------ICU4            --------->AHL20(2)            <---------AHL20(2)        <------ZmHOX2a(1)       <------MYB46(1)     <--------P --------->YAB1                                                         --------->YAB1    <-------GAMYB<-----------GT1                                                 --------->ARR11(3)    <---------MYB52(1)                                                <---------ARR14(2)   <---------DEAR3(2)                                                 --------->ARR14(2)  --------->ETT(1)<---------YAB1          --------->ANAC58     --------->CCA1(2) <---------ARR11(3)  <---------At1g77200                     --------->ANAC46  <---------YAB1      --------->GLK1(1) -------RAV1(1)--------->ICU4             --------->ANAC58----------->GT1       <---------CCA1(2) ----YAB1  --------->AHL20(2)<---------ARR14(2)     <---------TOE2(2) --------->ARR11(3) -YAB1 <------MYB83          --------->ARR14(2)     <---------TOE1(2) <---------ARR11(3)            -   gttgtcggtaggatttaattatcagtttgtatatatgcagacatatgcaactcgtatgtattgtgatatgcagatattactgatatctataacaagtttg  1595200                                                                                             --------                                                                                             --------                                                                                      ---------------                                                                                      <----------DOF2                                                         --------->At4g35610          ===============                                              <---------ZAT6<-----------HVH21         <---------DAG2                                             <---------TOE1(3)                        <--------------       <---------YAB1                     <---------MYB52(1)--------->At5g28300      <---------ANAC58       <---------AHL20(2)         --------->YAB1      <---------At5g28300            <---------ANAC58   <----------DOF2           <---------YAB1 <---------DOF5.7(2)                  --------->CCA1(2)  <---------DAG2           <---------ICU4 --------->DOF5.7(2)        --------->At4g35610     -------- ------>TEIL              --------->ICU4 --------->TOE2(3)<---------DEAR3(1)    --------->ARR14(2)   tgaaccttttttattgacgaggtatgtcatcatgtttgataatcgttagcgttattaacagcggtgagagaagcagacttgagatttgctttttcaagaa  1595300                                                                       --------->ANAC58                                                                       --------->ANAC46                                                                   --------->DOF5.7(2)                                                                 --------->DEAR3(1)                                                               --------->ABI4(1)                                                               ------>NtERF2                       --------->LBD16                        --------->DEAR3(1)                 ----------->ARR10                            --------->ANAC46                <----------CDC5                              --------->MYB46(3)               <---------At4g35610                           --------->ATERF1(1)          <-----------HVH21                                  --------->DEAR3(2)         --------->O2 --------->ANAC46                      <---------ATERF1(1)    --------->PCF2 --------->ARR14(2)                       <---------At5g28300    <---------PCF2 <---------ARR14(2)                    <-----------HVH21 ->ANAC58--------->TGA1a                                --------->ANAC46       --------->ANAC58     *TSS ->ANAC58<-----------RAV1(1)<----------DOF2             --------->ANAC58       --------->ANAC58------ >AGL15  <---------O2------>ZmHOX2a(2)                  --------->ANAC58     --------->ZAT6    ------ ==================bZIP_DOF --------->TOE2(3)       --------->ANAC58   --------->ANAC58        <----- -AGL15  ==============================bZIP_DOF     --------->ANAC46  <---------TOE1(3)        ------ ->ANAC46==================MYC_MYB ------------>CBF --------->ANAC58 <---------DOF5.7(2)       ------   actatgggcccatgtcgcgctgatccgaaactttaatcccaatagctattatgcacacaagtcaccgccgttcacgttagcactccaaacccttggcacg  1595400         <---------ALFIN1       ------>NtERF2      --------->ANAC46      <---------ETT(1)      --------->LBD16                  ------>ZmHOX2a(2)      ----------->HVH21               <------ZmHOX2a(2)                  <--------ZAP1    ------>MYB46(1)                  <---------ARR14(3)                  <-----------HVH21    ------>MYB83                     <-----------ARR10                  --------->LBD16  --------->AtMYB61                  <---------ARR14(2)                --------->LBD16            <-- --->ANAC55(1)                       --------->ARR14(2)               <---------LBD16             <-- --->ANAC55(2)                       <---------ARR11(3)           <----------DOF2             <------ ----ANAC55(2)                       --------->ARR14(3)     <---------DAG2--------->WRKY18(1) ------- --->ANAC58                  --------->At4g35610            <----------DOF2                   <------ --->ANAC58         <----------DOF2  --------->ARR11(3)   <---------At4g35610                 -------   taaacctcccgacacttgctctctttctctcatctccacgatcttctcactctcttggtgagctttttctttcccggtcaaaatttcgactatagaagtt  1595500                                                  <---------ATERF1(1)                                                 <---------DEAR3(1)          <----------DOF2                       --------->LBD16      <---------DEAR3(2)                       --------->ANAC46    <---------MYB52(1)                        <---------LBD16 --------->SPL7                              <---------ANAC58 -------ANAC58                               <---------ANAC58 -------ANAC58                            <----------DOF2 ---HSFB2a(1)                      --------->ANAC46          --------->HSFB2a(2)                    - -->HSFB2a(1)                      --------->ANAC58<---------ZAT2                   --------->GLK1(1) ---HSFC1(2)                       --------->ANAC55(1)       <---------HSFB2a(2)    <---------GLK1(1) -->HSFC1(2)                       --------->ANAC58<------NtERF2          --------->YAB1            -   tcgtccgtcggtctttctaactgaatcaaattttcacaagtaatctttcgcgcggctcgttttatagaaacacgattcagaatgggaattcattttgttg  1595600        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      --------->AGP1<---------ZAT14      <---------AGP1--------->ZAT18      --------->ARR14(2)      <---------ARR14(2)      <-----------ARR10                                                    <---------At5g28300      --------->ARR11(3)                                          <------NtERF2      <---------ARR11(3)           --------->TOE2(3)             ------>NtERF2  <---------MYB46(3)     <---------CCA1(2)     <---------MYB46(3)                    <-----------HVH21     --------->At4g35610<-----------RAV1(1)                     --------->DEAR3(1)    <---------ZAT2 -------->ANAC58    --------->ZAT14--------->TOE1(3)       --------->ARR14(2)  --------->ALFIN1 -------->ANAC58    <---------ZAT18--------->YAB1 ------>ZmHOX2a(2)    --------->YAB1 --------->ZAT2   acaaggcagatctatggaagagtgcactgttgttcaatcttaaacttcgtgatcgatttcgaatcgccgtcgatgatcaccgtggtcgagctacggtttt  1595700                                                              ------>NtERF2                                                              --------->LBD16                                                             <---------LBD16                                                            <---------LBD16                                                      <---------HSFC1(2)                                                      --------->HSFB2a(1)                                                    --------->ARR14(2)                                                  --------->LBD16                                                 --------->ANAC55(2)                                                 --------->HSFB2a(2)                                      ----------->HVH21<----------DOF2                                    ----------------------->TaNAC69(2)            <---------ANAC58       --------->MYB55(2) --------->HSFC1(2)            <---------ANAC58       <---------MYB46(3) <---------HSFB2a(1)         <--------P              <---------MYB52(1) <---------ARR14(2)        <-------GAMYB          --------->DEAR3(1)--------->ANAC46       <------MYB46(1)        --------->MYB46(3) <---------ANAC55(2)       <---------MYB46(3)   --------->ANAC46     <---------HSFB2a(2)                   <----------DOF2       <------MYB83         <---------ALFIN1    <---------LBD16<------NtERF2       --------->DEAR3(1)      <---------AtMYB61    --------->MYB46(3) <---------ARR14(2)                   --------->DREB2C(2) <---------LBD16         --------->ARR14(2)   --------->ARR14(2)                <---------ALFIN1 ----   ctcaccggatggttgcttctcttccactatccaccgctgggtgactcgattccggaactttcgccgggagtctctcccttctccaccggctttttatcgc  1595800                       <----------DOF2                      <---------DAG2                   <-----------GT1                <---------ICU4              --------->ARR14(2)                <--------HAHB4              --------->ARR11(3)                -------->ATHB1              <---------ARR11(3)                --------->ATHB12            <---------ARR14(2)                --------->YAB1      --------->YAB1                            <---------ZAT2              ------->TEIL    <-----------GT1                                 --------->At4g35610         <---------AtLEC2--------->AHL20(2) <---------AGP1  <----------DOF2   <---------At4g35610 ----->DEAR3(1)<---------ATHB12 --------->ZAT6------>ZmHOX2a(2)             <-----------RAV1(2)   agacgaggtttgaatgaatcattaccttttattaactctaatagtggatctgtgtaattgagctttgtgatttgaacttcagctgtttctctgagagatg  1595900  Previous    Next  AGI:  At3g05500.1    Description:  rubber elongation factor (REF) family protein. Identical to REF/SRPP-like protein At3g05500 [Arabidopsis Thaliana] (GB:Q9MA63); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to unknown [Populus trichocarpa] (GB:ABK93466.1); contains InterPro domain Rubber elongation factor (InterPro:IPR008802) Range:  from: 1593440    to: 1595021    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g05510.1    Description:  phospholipid/glycerol acyltransferase family protein. similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G78690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17523.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain Tafazzin (InterPro:IPR000872) Range:  from: 1595400    to: 1598277    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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