Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ----------->HVH21                  <-------MYC3                  ------->MYC3                 <---------TGA1a                 --------->bZIP60(1)                 --------->O2                 <---------bZIP60(1)                 <---------O2                 --------->TGA1a                 --------->ANAC46                 <---------ANAC55(2)                 <---------bZIP60(2)                 --------->ANAC55(2)             --------->ARR11(3)            --------->YAB1            <---------ICU4           <---------YAB1           --------->ICU4         --------->YAB1                                                    --------->REM1(1) ------>ICU4-------->HAHB4                                           <---------ZAT18 ->YAB1 --------->ICU4                                               --------->ZAT18               -- ->ANAC46<---------ICU4                              --------->ANAC55(2) <----------DOF2           <-   atattgggccataatgatcacgtgacttagttttgttttgtttttgtttgtgttcatgtaattttaagtagtgggcttcaacttgttttgagcccatagc  1593000         <----------DOF2         <---------DAG2                                                       --------->TOE2(3)       --------------->AGL15                                                 --------->ATHB12   --------->GLK1(1)                                                         <---------ICU4   <---------GLK1(1)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->YAB1       --- --------->ATHB12            <---------DAG2                                 <---------ATHB12     <--- ----->MYC3                  <----------DOF2                                --------->ICU4    ------- ------MYC3       --------->ATHB12                 <---------ANAC46 <----------DOF2    ----------->GT1   acatgatttccctttattgtttattggtctactttttttttttttttttttttgtgtgaacattggtctacttttaaaatcattaaactatgtaaattag  1593100                                                                              --------->YAB1                                                                           <---------ICU4                                                                          --------->ICU4                                                                   <---------AHL20(1)                                                                   --------->AHL20(1)                                                                  --------->YAB1                                                                 <---------YAB1       <---------AHL20(2)                                     --------->AHL20(2)           ----------       <---------AHL20(1)                           --------->KAN4(2)    --------->ANAC55(2)       --------->AHL20(2)                          <---------HSFB2a(1)   <---------ANAC55(2)<--------       --------->AHL20(1)                        --------->YAB1<---------AHL20(2)         -----------      <---------AHL20(2)             <---------ICU4--------->HSFB2a(1)  <---------ICU4    <----------      --------->AHL20(2)             <--------HAHB4<---------KAN4(1) --------->YAB1       -----------    --------->YAB1                   --------->ATHB12<---------YAB1<---------AHL20(2)     <---------- ------>GLK1(2)    --------->WRKY38(1)--------->TOE2(3)       --------->ICU4 <---------YAB1<--------- ------GLK1(2)     --------->WRKY12 <---------YAB1 --------->KAN4(1)<---------YAB1<-----------GT1 -->YAB1      ------>ZmHOX2a(1)     --------->ICU4<---------KAN4(2)--------->AHL20(2)     <----------   aatctaaaataaattcctccattgactcccaagtcttcatcattagaacaagaatattcttgtatttattataatacttattataaacaatttccttttc  1593200                                                                            ------->GAMYB                                                                           --------->MYB46(3)                                                                         <---------DOF5.7(2)                                                                         --------->MYB52(1)  ----------->GT1                                                       <---------WRKY12 ----->AGL15                                           <---------ANAC55(2) --------->ANAC46 --DOF2                      <-----------GT1           --------->ANAC55(2)--------->At4g35610      <- ------>AGL1             <---------AHL20(1)    <---------ALFIN1         <---------WRKY45       <----- -------AGL2             <---------AHL20(2)    --------->ANAC58         <---------WRKY38(1)   <------ ------>AG               --------->AHL20(2)    --------->ANAC58       <-----------HVH21       ------- -------AGL3          --------->AHL20(2)     <---------ALFIN1------->GAMYB<---------At4g35610 <------MYB46(1) ------AGL15         --------->AHL20(2)    ----------->RAV1(1)--------->ANAC46        --------->GLK1(2) -------AGL1    --------->YAB1   <----------DOF2     <---------AHL20(2)--------->DOF5.7(2)    <------MYB83   tggtgagaaaaaacaaaatcaaaataaaaaatttccttttcttagcgacacacatttacttaacccacaagtcgtcaacggcccaaagaatatggatggt  1593300                                                                                      ------->MYC3                                                                                      <-------PIF4                                                                                      ------->PIF5                                                                                      <-------MYC4                                                                                      ------->MYC4                                                                                      <-------PIF5                                                                                      ------->MYC2                                                                                      ------->PIF4                                                                   --------->ANAC55(2)<-------MYC3                                    --------------->AGL15          --------->ANAC46  ================                                    <---------------AGL15          --------->ANAC58  --------->ANAC55(2)                                   ----------------->AGL3          ----------->GT1   --------->O2                                   ==================================================================                                   ----------------->AGL2          --------->ANAC58  --------->ANAC46                                   <---------MYB59                 <---------ANAC55(2)<-------MYC2                                 ------>MYB83                    --------->ANAC46    <---------O2                                 ------>MYB46(1)              <---------REM1(2)      --------->TGA1a                               ------->GAMYB               <---------ANAC58          <---------TGA1a   ---------->DOF2             --------->DEAR3(1)          <---------ANAC46        <------------OsbHLH66 --------ANAC55(2)            --------->DEAR3(2)           <---------ANAC58   <-------TEIL --GAMYB                    --------->MYB52(1)       --------->ANAC46     <---------TOE2(3) ---MYB46(3)               ------>ZmHOX2a(1)         --------->ANAC58     <---------TOE1(3) ---->GT1     ---------->DOF2 --------->MYB46(3)     --------->ANAC58     --------->DAG2   tacgagagagcgcatacaaagacgcgctcctaaccgacccaattagagaaaacacacgcttgcttacacgcgtaataaggttcttacacgtgccaaaaac  1593400                        ==================================bZIP_DOF                        --------->ANAC55(2)                        <---------bZIP60(1)                        --------->bZIP60(1)                        <---------TGA1a                        --------->O2                        <---------O2                        --------->TGA1a                        --------->bZIP60(2)                        <---------ANAC55(2)                        --------->ANAC46                --------->TOE1(2)                --------->TOE2(2)                                             <---------AHL20(2)        ==========================bZIP_DOF     --------------------->WRI1    --------->AHL20(2)        ---------->DOF2 --------->ANAC58       <----------DOF2             --------->YAB1       <---------AHL20(2) ------------>CBF    <---------ANAC58     <---------AHL20(2)     ----------->TBP<-----------HVH21    --------->ATHB12         <---------AHL20(1)   <---------------AGL15--------->ANAC58 <---------ICU4           --------->AHL20(1) ==================bZIP_DOF             <---------YAB1            --------->AHL20(2) ==================MADS_MADS            *TSS  <---------ANAC58   --------->YAB1                ------   ccttgttatataaagaaacctaggtcacgtcaatttctcatcaccattgctttgttttgttcgtcaaatataatcaattttaaatttcttctcttctctt  1593500                                                                    <---------At4g35610                                                                    --------->At4g35610      --------                                                                  ---------->CDC5           <--------                                                            ------>ZmHOX2a(2)               ---------                                                           <---------GLK1(1)                <--------                                                           --------->GLK1(1)                <--------                                                           <------ZmHOX2a(2)                <--------                                                          <---------ARR14(2)        --------->At5g28300          <---------DAG2                                  --------->ARR14(2)       ----------->GT1          <----------DOF2                                 <-----------ARR10 --------------->AGL15         <---------DAG2                                   --------->ARR11(3)<---------------AGL15    ------->TEIL    --------->GLK1(2)    <---------ICU4   <---------AGP1   <-----------------AG <----    --------->ARR14(2)       <---------AtLEC2        --------->MYB52(1)   --------->ZAT2    <-------- --------------->WRI1    <----------DOF2<---------YAB1    ------->TEIL    <---------ZAT2    ---------   caaacgaatcgcctttttcgataatctctttgcatcgatttcatcatggctactcaaacggatctcgctcagcccaagcttgatatggtaaattacgtaa  1593600 ->TOE2(3) -ANAC58                                   <---------ANAC58 >ANAC55(2)                                --------->ANAC55(2)       --------->ARR14(2) -ANAC55(2)            <---------ANAC58    <---------ANAC58          --------->ARR11(3) -ANAC58               <---------ANAC58   <---------TOE2(3)          <---------ARR14(2) -ANAC46   <---------ANAC58    --------->ARR11(3)                    <---------ARR11(3) -----CCA1(2)        <-----------GT1     <-----------GT1    --------->ICU4 -ANAC55(1)<---------ANAC58    <---------ARR14(2)      ----------->GT1 -->GT1  <---------ARR11(3)   <---------CCA1(2)    <---------YAB1   <------ZmHOX2a(1)   atctctctcaatttcttatcgtttttcgtctcaaatcttgattttacgtttctgtgattgtaattttggaggatttttggttcaattttgttcacatgtc  1593700                                            <---------ARR14(2)                 ------->TEIL               --------->ARR14(2)                 --------->ARR14(2)      ------>ZmHOX2a(2)                 <---------ARR14(2)     <------ZmHOX2a(2)           <-------TEIL                <---------ARR14(2)    <---------TOE1(3)    ------>MYB83 <---------AGP1  <----------DOF2      <---------AtLEC2                      <--------    ------>MYB46(1)------>ZmHOX2a(2)   --------->ARR14(2)    <---------TOE2(3)            <---------TOE2(3)   tctacctatcgcattcatggatctgtagttcaattctttcagatcgtattcgtagtgcatgttaatgttttgtttatgtagaagattagattaatgaatt  1593800                                           <---------ICU4                                           --------->ATHB12                                           --------->ATHB51                                          <---------YAB1                                          --------->ICU4                                          <---------ATHB51                         <---------AHL20(2)-------->HAHB4                         --------->AHL20(2)<---------AHL20(2)                 <---------ZAT18        <---------ICU4                 --------->ZAT18        --------->YAB1              <---------ANAC46         --------->ICU4         <---------RVE1(1)      <---------ANAC58         <---------CCA1(1)      <---------ANAC58                                               <-----        <---------ARR11(3)      <---------AtLEC2    <-----------HVH21                          <-----        --------->ARR11(3)<---------AHL20(2)   <---------AHL20(2)                       <-----------GT1       --------->YAB1    <---------AHL20(1)-------->ATHB1            ---------->DOF2 --------->ARR14(2) -AHL20(2)    <-----------RAV1(1)      <---------YAB1             <------ZmHOX2a(1)  <---------ARR14(2)   gaaaacaaatgatattttgtgggctaattaatttgcatgttataattattgaattgtcagaccaaggaggagaaagagaggttgaagtatttgcaattcg  1593900  Previous    Next  AGI:  At3g05500.1    Description:  rubber elongation factor (REF) family protein. Identical to REF/SRPP-like protein At3g05500 [Arabidopsis Thaliana] (GB:Q9MA63); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to unknown [Populus trichocarpa] (GB:ABK93466.1); contains InterPro domain Rubber elongation factor (InterPro:IPR008802) Range:  from: 1593440    to: 1595021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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