Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------AHL20(2)                                                        --------->AHL20(2)                                                     <---------ICU4                                                    --------->ICU4                                                  --------->YAB1          --------->ANAC58                     --------->YAB1          --------->ANAC58                    <---------ATHB12          --------->ANAC46              --------->GLK1(1)      <---------AHL20(2)                <---------GLK1(1)<---------AHL20(2) -------->ANAC58                      <------ZmHOX2a(1) <---------AHL20(1) -------->ANAC58                    --------->MYB59 <---------YAB1 -------->ANAC46         --------->TOE2(3)  --------->WOX13(1) ->GT1--------->AHL20(2) --------->TOE1(3)<---------ATHB12              ---------->DOF2          <---   acacacaattaaacgaaactcgtggaacattaacatgttaggaaatcaatcaacataattaattttctcggtcgtaaagaaatagtattcaagactcaag  1590900                                                                                         --------->ARR14(2)                                                                          <---------AHL20(2)                                                                         --------->AHL20(2)                                     --------->AHL20(2)                  <---------AHL20(2)      ----                                     <---------AHL20(2)            ----------->GT1       <---------ARR14(2)                                    <---------AHL20(2)             --------->YAB1<---------AHL20(1)                                    --------->AHL20(2)          ------>MYB46(1)  <---------AHL20(2)                                 --------->YAB1               <---------MYB59    --------->AHL20(2)                                 --------->AHL20(2)           --------->TOE2(3)  --------->AHL20(1) ------GLK1(2)<---------ICU4  --------->YAB1    ----------->GT1 ------>MYB83    --------->AHL20(2)   attatgctcttcttaaatattgcaatttggattaataaaaaaattttgctatgtaaaactaaaacctaattgtaatttaaaattttatttgaatccgtcc  1591000                                                                                                -----             <---------ANAC46                                                               ---------             <---------ANAC58   --------->ARR14(2)       --------->MYB46(3)                <---------YAB1             <---------ANAC58   <---------ARR14(2)     --------->MYB52(1)                  --------->ICU4        ---------->DOF2        --------->GLK1(1)       ------>MYB46(1)                   <---------ANAC58     --------->MYB52(1)--------->ANAC58                ------>MYB83                      <---------ANAC58   <---------MYB52(2)  --------->ANAC46             --------->ANAC46            ----------->GT1 <---- -->ZmHOX2a(1)         --------->ANAC58           <-----------GT1  ---------->DOF2       <---------AtLEC2   taataactaacaaagtcgtggatgcacgaaaacatatccaaaacttcaaaataaacccaacgaatatttcaaagcttagacattgtaatttgcatgatta  1591100                       --------->YAB1                  <---------ANAC58             <---------ARR14(2)                                              <-----------RAV1(1)             --------->ARR14(2)                                              <---------MYB46(3)             <---------KAN4(2)                                    ------->TEIL             ---------->TaMYB80                                  <---------CCA1(2)          --------->MYB46(3)               --------->WOX13(1)  <---------ANAC55(2)                  - ---------->DOF2  <---------ANAC46        --------->AHL20(2)  --------------->AtSPL8                < ---->AHL20(2)    <---------ANAC58     <---------ICU4         --------------->AtSPL3           ------ >ATHB12--------->MYB52(1)          --------->YAB1            <---------------AtSPL3      ----------- -----AHL20(2)<----------TaMYB80  --------->AHL20(2) --------->AHL20(2)   <----------DOF2<<<<<<<<<<<<   aaataaagagcaacgaatatgcgtataataagtcaatttcataatcaattaacaaaaaaataaacgcgtacctattcttttgttggagaaaatacaatgg  1591200            <-----------GT1          --------->ARR11(3)     <---------MYB52(1)                                             ------>MYB83    --------->TOE2(3)                                               ------>MYB46(1)   <---------ANAC46             <---------YAB1                    --------->DEAR3(1)          -------   ----------->GT1     --------->ANAC58                        --------->ANAC58               <------ -------->ARR14(2)     --------->ANAC58                  --------->At4g35610                  ------- ---------ARR14(2) --------->ANAC46                 --------->YAB1--------->AtMYB61      --------->At4g35610 ------>AtMYB77  --------->AtLEC2         --------->TOE2(3)    --------->ANAC46          <---------ZAT2 ->CBF    <---------ARR11(3)  --------->YAB1  ----------->GT1<---------ALFIN1            --------->ZAT2 <<<<<LFY <---------AHL20(1)  <---------ICU4<-----------RAV1(2)--------->ANAC58    *TSS  <---------At4g35610   cagtttcgttaatatatccatacacaagcccattataacaaaaacctcaggttataagaagctacacaccaacgcttaacctgttgtcttcagctgtgta  1591300                                                                                           <---------ALFIN1                                                                            <---------ANAC58                               --------->ANAC58                <---------HSFB2a(2)         --------->ZAT6 --------->GLK1(2)             --------->ANAC58                --------->HSFB2a(2)<---------ICU4 -->ZAT14                    ---------->DOF2          <---------YAB1        <---------ANAC58      --- ---ZAT14                ----------->GT1           --------->GLK1(2)        <---------ANAC46      <-- -->REM1(2)        ---------->DOF2        ---------->DOF2   <---------At5g28300---------->DOF2  <----   cagaatcaagtttccaagagagaaagagagtaaaagcaaattaacaaaggaagactctgattcaccgagaaggttttggcttaaagatgacgaacactcg  1591400                                                                                               ------                                                                                               ======                                                                                              <------ZmHOX2a(2)          <-----------HVH21                                                                   =======          <-----------TGA1                                                       <---------ANAC46          <---------RAP2.6(3)                                                    <---------ANAC58          ------>NtERF2                                              --------->ARR14(1)       -------         --------->RRTF1(3)                                          --------->CCA1(2)       --------         --------->RAP2.3(2)                                        <---------GLK1(2)        <-------         --------->RAP2.3(3)                                        --------->ARR11(1)       <-------         --------->RAP2.6(2)                         <---------LBD16--------->ARR14(2)       <-------         --------->DEAR3(1)                         --------->MYB52(1)           <---------ANAC58       ------>NtERF2                       --------->LBD16          <---------ARR14(2)       --------      --------->ANAC46                    <---------ANAC46         <----------TaMYB80        <-------  ============================HOX2a_HOX2a <---------ANAC58         --------->HSFB2a(1)       --------  <------ZmHOX2a(2)    ------>ZmHOX2a(1)  <---------ANAC58         --------->GLK1(1)         <------- --------->ARR14(2)  ----------->RAV1(2)<---------At4g35610        <---------GLK1(1)        <-------- <---------ARR11(3) <------ZmHOX2a(2)   --------->ZAT2 --------->LBD16<-------TEIL          <-------- ------>LBD16      <---------ARR14(2)   <---------ZAT2------->GAMYB<---------HSFB2a(1)     --------->LBD16 -------TOE1(2)    --------->ARR14(2)   --------->At4g35610       ----------->ARR10      <---------LBD16 -----LBD16<------NtERF2      --------->YAB1        -------->P<---------LBD16    <---------ANAC55(2)   cgcgatctacgccgtcatcgcgatcctggcgatagtaatctcagccgtggaatcaaccggagacttcggagattcgctagatttcgtgagagccggatct  1591500 >ZmHOX2a(2) ============================HOX2a_HOX2a                                               <-----------ARR10 ============================HOX2a_HOX2a                                               <---------ARR14(2) -->GLK1(1)                                                                            --------->ARR14(2) ->ARR14(3)                                                                         <---------ANAC46 --ARR11(1)                                                                        <------NtERF2 ----ARR10                                                                        ------>NtERF2 --ARR14(3)                                                                       <---------ORA47(2) ->ARR11(3)                       <---------ANAC46                                --------->LBD16 --ARR14(2)                  ------>ZmHOX2a(2)                                   --------->DEAR3(1) ->ARR14(2)            --------->ARR14(2)                                        --------->ATERF1(2) --ARR11(3)           <------ZmHOX2a(1)                 --------->CCA1(2)        <---------ATERF1(2) -ARR14(1)            ==============HOX2a_HOX2a  >>>>>>>>>TBF1                   <---------DEAR3(1) -CCA1(2) <---------LBD16------>ZmHOX2a(2)<---------LBD16                       <---------LBD16   tcatcgctcttctctggatgcacaggatcgatcgcagagtgtatagcggaagaagaagagatggagttcgattcagacataagccggcgtatattagcac  1591600                                                              --------------->AtSPL8                                                            <---------ANAC58          <---------GLK1(1)                                                            <---------ANAC58          --------->ZAT2                                                       --------->ALFIN1               <---------ZAT2                                                       <------NtERF2                  --------->At4g35610                                                       <---------DEAR3(1)             <---------At4g35610                                                     <---------ANAC46             --------->ALFIN1                                                  --------->ANAC46       <------------AtMYB77                                                 <---------LBD16  --------->SPL7<---------ANAC46    -                                          <---------ANAC58  <---------ANAC46   <------NtERF2      <--                                          <---------ANAC46 <-------TEIL  --------->MYB46(3)     <----                                          <---------ANAC58<---------ANAC46------->GAMYB         -----                            <------ZmHOX2a(1)  <---------REM1(2)<---------SPL7------>NtERF2     <----                <---------DEAR3(1)    <---------ZAT18<---------ANAC58   --------->At4g35610     -----            --------->At4g35610<------ZmHOX2a(1) <---------At5g28300    <---------At4g35610    <-----      <-------TEIL    <----------DOF2--------->ALFIN1<---------ANAC58 --------->REM1(1)  <-----------RAV1(2)   agaagaagtacattagctacggtgctatgaggaggaacagtgtgccttgttcacggcgtggtgcgtcgtactacaactgccagcgtggagctcaggcgaa  1591700          <---------MYB46(3)         --------->ALFIN1        --------->LBD16       <---------ANAC46       <---------ANAC58       <---------ANAC58  ---------->DOF2                <-----------RAV1(2) ----->ZmHOX2a(1)                --------->ATERF1(1) -------ICU4                    <-------TEIL -----ARR14(2)                 --------->ALFIN1                                   <----------DOF2 ---->ARR14(2)          --------->ZAT6                                    ---------->ID1 -----ARR11(1)       --------->AtMYB61                             ------>ZmHOX2a(1) ---->GLK1(2)    --------->At4g35610                <-----------HVH21   <-----------GT1 ----ARR14(1)    <---------At4g35610 <---------ANAC46   <---------ANAC55(2)   <----------DOF2   tccttacagccgtggatgcagcaccatcactaggtgcaggcgttgaagaagatgagtcacttgaatttcctattttgcccctttctttttgtgtctctgt  1591800  Previous    Next  AGI:  At3g05490.1    Description:  RALFL22 (RALF-LIKE 22). similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to rapid alkalinization factor preproprotein [Nicotiana attenuata] (GB:AAS13437.1); similar to RALF precursor [Nicotiana tabacum] (GB:AAL26478.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 1591283    to: 1591989    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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