Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <----------DOF2             <---------At4g35610                                               --    <---------ANAC58         ------>ZmHOX2a(2)                                                     <-    <---------ANAC58       --------->ARR11(3)                    --------->MYB52(1)       <-------TEIL ----TOE2(3)               <---------ARR11(3)              --------->YAB1 <---------REM1(1) --------- -->MYB52(1)   --------->AtLEC2  --------->At4g35610  <-------TEIL      <------ZmHOX2a(1)--------->CCA1(2)   gatggtgcttttgagccatggaacatagtgatctcatcagccctgtttacatgagattcaaatataagaacggaggatgtagaaactatagatacaaaga  1518200                                          <---------ANAC58                                          <---------ANAC46                                          <---------ANAC58                   --------->HSFB2a(2)  --------->TOE2(3)                   <---------ANAC58         <---------At4g35610 ------->GLK1(1)                      <---------ANAC58         --------->At4g35610 --------GLK1(1)                      <---------ANAC46     ---------->ID1    <---------HSFB2a(2) ->DOF2           <---------TOE2(3)<---------ANAC46<---------AHL20(2) --------->YAB1             ----   gaaatctcaattcagacattaagaaactaaacttgttgtgtcttgtgtggaatttttttttgttcttctgaatcatcttctcgagggtagaagcgagaag  1518300                                                       --------->MYB52(1)                                                       ------>MYB46(1)                                                     --------->AtMYB61                                                     <---------MYB46(2)                                                     <---------MYB59                                                   <---------ARR11(3)                                             --------->HSFB2a(2)                                             <---------HSFB2a(2)                         <---------HSFB2a(2)                                        --------->HSFC1(2)                               <---------HSFC1(1)                                        <---------HSFB2a(1)                              --------->HSFB2a(2)                                        <---------HSFC1(2)                               --------->HSFC1(1)                                        --------->HSFB2a(1)                           --------->GLK1(2)                          <------ZmHOX2a(1)  --------->HSFC1(1)               <---------MYB46(3)                       --------->YAB1  --------->GLK1(2)                      <------MYB83    <------                       <-----------RAV1(2)   <---------HSFC1(1)               <------MYB46(1) -------                     --------->GLK1(2) --------->ARR14(2)                    <---------AtMYB61<------               <---------ANAC46        <---------ARR11(3) --------->ATHB12   --------->MYB55(2)               ----------->GT1         <---------ARR14(2)--------->MYB46(3)  --------->MYB111(2)           <------ZmHOX2a(1)          <---------GLK1(2)------>MYB83          --------->ALFIN1 -------  <---------YAB1 <--------P        --------->YAB1  <-----------ARR10         <---------MYB46(3) ------->GT1--------->ALFIN1 <---------At4g35610   --------->ARR11(3)        --------->MYB111(1)<----   ggttatgactcgaggaggggtagaatcaggaggctgatcagaatcttctagaagacctaaccattggaagagtgatgagttggtggagtttctagaagtt  1518400                                               <---------WOX13(1)                                    ------>ZmHOX2a(2)                   <---------ANAC58                                   <------ZmHOX2a(2)                    <---------ANAC58      -------                                  <---------ARR11(3)                 <------ZmHOX2a(1)  <---------ARR14(2)                                  --------->AGP1                    <------MYB83        --------->ARR14(2)                                  --------->ARR14(2)                <------MYB46(1)    <---------HSFB2a(1)       <-----------RAV1(1)        <---------AGP1                   --------->MYB111(2) <------MYB83<- ---HSFC1(2)                      <---------ARR14(2)              <--------P           <------MYB46(1) -->HSFB2a(1)                     --------->ARR11(3)           <---------TOE2(3)       <---------HSFC1(2) ---HSFB2a(1)                    <---------CCA1(2)         <---------ANAC58            --------->HSFC1(2) -->HSFC1(2)                    ----------->ARR10          <---------ANAC46            --------->HSFB2a(1) -------GT1                  <----------DOF2<---------YAB1 <---------ANAC58 <---------ANAC46  -------   tccatttttgtgttggaattgtttgagagagctttagatcttctctctgattgttttttttgcttgaggtaggagcttgtgtaaatggaaggtccgaagc  1518500                                                                     <---------ANAC58                                                                     <---------ANAC58             ---                                                                   --------->ARR14(2)         <------                                                                   <---------ARR14(2)         <------                                                                   <---------ARR11(3)         <------                                                             --------->ALFIN1             <----------                  <---------TOE2(3)                         *TSS   --------->ARR11(3)   <---------YAB1       <---------ARR11(3)                   <----------DOF2<---------ANAC58             <---------AHL20(2)       --------->ARR11(3)              <----------DOF2     <---------ANAC55(1)       --------->AHL20(1) -->ANAC58        <---------TOE1(3) --------->GLK1(2)      <---------ANAC46          <---------ARR11(3) --------ARR14(2)---------->DOF2   <---------GLK1(2)       <---------ANAC55(2)    --------->AHL20(2) -->ANAC58<----------DOF2     <----------DOF2              <---------ANAC58     ----------->GT1 -----   aaatttgaagctcttttgttaaagttttgctactttagattcttttctttgagagagagtaacgtgtagtatcttgctcaacaagtatatattattgtgt  1518600   --------->ARR11(3)   <---------ARR11(3) ------>ALFIN1 ---ANAC58                                                --------->TOE2(3)    ---------->DOF2 ---ANAC46            <------------CBF        ------->GAMYB                 --------->AtLEC2 ---ANAC58         <---------ATHB12          --------->MYB46(3)             <---------YAB1   -------- --CBF         ------------>CBF             -------->P    <----------DOF2 <-----------------AGL1 ---->ALFIN1 ------>NtERF2          <---------AtLEC2 <-------TEIL <----------DOF2--------->DAG2   gtggagatgttgtgaggcccaatcgattgttttgttttggatggctaaccacagtttcatctttaatgcttttatgtcatgaaaaggcaagagagaaact  1518700                                      <---------WOX13(1)                                    ------>MYB46(1)                                    ------>MYB83                                  --------->TOE2(3)                                  <---------MYB59                                  <---------MYB46(2)                                 <---------ANAC55(2)                                 --------->ANAC55(2)                                 ----------------->AG                                               <                                <-----------------AGL1                                           <---                        --------->ANAC58                                                        <----                        --------->ANAC58           <----------DOF2                              <----                  ---------->DOF2----------------->AGL1       <----------DOF2           <---------ANAC58 ->GLK1(2)  ---------->DOF2    <-----------GT1  <---------ALFIN1     <---------AHL20(2) <---------ANAC58   gagaagtgatgacttaaagcaaaaggaagcaaattacctaattggtagcccaacttttattagacttttatgaaattggtgttccatattgcctattggc  1518800                                                          <------ZmHOX2a(2)                                                         --------->AGP1                                                         --------->ARR11(3)                                                         <---------ARR11(3)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                 --------->ANAC46                                              <-------TEIL--------->CCA1(2)                        <-      --------->ZAT6              --------->ANAC58 --------->ZAT14                              <---- --------->YAB1         ---------->DOF2       <---------ZAT18                                   ----- ---------YAB1       --------->AtLEC2         --------->ZAT18 --------->ANAC46                  <---- -------DOF2       <---------AtLEC2     ---------->DOF2 <---------GLK1(1)                       ----- -----ANAC58       <---------ANAC46 <---------ARR11(3)  --------->GLK1(1)                      ------ -----ANAC58---------->DOF2       --------->ANAC58 <---------ZAT14            <---------YAB1   ------   ttttgataacactacaaagttccatggaaagtagacaagctctaaaggtccactacagagatccacataacaagttaactattatttgtcatcacaaata  1518900         <---------REM1(1)                                                                 <---------ANAC58   <---------TOE2(3)      --------->ANAC46                                                 <---------ANAC58 ---------DOF2         <---------ZAT18                                               <---------AHL20(2) -----AHL20(1)        <---------PCF2                                           ------>ZmHOX2a(1) ---->AHL20(1)       <---------SPL7    ----------->RAV1(1)       --------->AHL20(2) <---------AHL20(1) -----ARR11(3)     --------------->AtSPL8                       --------->AHL20(2)  <---------ARR11(3) ---->ARR11(3)     --------------->AtSPL3            --------->YAB1   <---------TOE2(3)  <---------AHL20(2) --->CCA1(1)       <---------ZAT6      <---------ALFIN1         <---------ATHB12   <---------CCA1(2) --->RVE1(1)       <---------------AtSPL8          ---------->DOF2  <---------AHL20(2)   <-----------GT1   tctttaagaaaatgtagcatagtggtaccctcaaattacacccacatttgaacaaaagtaattccaataaataatgttttcctccatatattttcttgac  1519000                                                        <----------DOF2                                                  --------->ARR11(3)                                                  <---------ARR11(3)                                                  --------->ARR14(2)                                                 --------->RVE1(1)                                <--                                                 --------->CCA1(1)                                ---                                             --------->ARR11(3)                                  <---                     --------->CCA1(2)       <---------ARR11(3)           --------->YAB1      -------                  --------->ANAC46          --------->YAB1    --------->AHL20(2)         ------>ZmHOX2a(1)        <---------ARR11(3)                 <---------TOE2(3)--------->TOE2(3)     <---------GLK1(2)   gataaaacaataacttatcaacgatacacaaacacatcaaaaactaagataatatcttctttcattaaaaactctctcatattagattctccttatcgag  1519100  Previous    Next  AGI:  At3g05327.1    Description:  similar to CYCP4,1 (cyclin p4,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G44740.1); similar to cyclin-dependent kinase [Cucumis melo] (GB:ABR67416.1); contains InterPro domain Cyclin-related 2 (InterPro:IPR013922); contains InterPro domain Cyclin-like (InterPro:IPR011028); contains InterPro domain Negative regulatory factor PREG (InterPro:IPR012389) Range:  from: 1517425    to: 1518560    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05330.1    Description:  ATN/ATTAN (TANGLED). similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT4G32420.1); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT4G32420.2); similar to microtubule binding protein [Cucumis melo] (GB:ABR67412.1) Range:  from: 1518888    to: 1521500    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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