Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------->TEIL      --------->ATHB12   --------->ZAT6                    ---------->DOF2                     ------ ---->MYB52(2)        <----------DOF2                     --------->YAB1         ---------->DOF2 ->TOE2(3)            ------>ZmHOX2a(1)--------------->AGL15     --------->At4g35610   ----------->GT1   gttccaattgatttagaaccagtcctttcactatgaactctcttgaaatagctatagctataaaagtagatgaactgagaaatgaaagactgaaaattct  1507300                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                                                                     --------->ARR11(3)                                                                    --------->RVE1(1)                                                                    <---------GLK1(1)                                                                    --------->GLK1(1)                                                  ----------->RAV1(1)<---------ARR11(3)                                               ------>NtERF2        --------->CCA1(1)                                             <---------ANAC58      --------->ARR11(3)                                  ------>ZmHOX2a(1) --------->ANAC46<---------RVE1(1)                               ---------->ID1<---------ANAC58  ---------->DOF2 --------->ARR11(3) --->TOE2(3)     ----------->GT1  <----------DOF2 <---------ALFIN1 <---------ARR11(3)   tagttccaaggccttgatacagtgaaaagacttgtcctttagaaattgcctcccacataacatcggaaagatatctgcaaatatcacccaaaaaaaaaaa  1507400                                                                  ---------->DOF2                                                           ---------->DOF2                     ------                                                         <---------ATHB12                    <-------PIF5                          ----------->RAV1(1)      --------->ANAC46                          ------->PIF5                        --------->DEAR3(2)         --------->ANAC58                   ----------->HVH21                    <------ZmHOX2a(1)              --------->ANAC58                 <---------At4g35610              --------->ANAC46                    ------->TEIL <------ZmHOX2a(1)    --------->At4g35610   ccattacaaaaaaaacacgagaggagaccgacactatctatagaaaccgatgcacccaaatcaaaggataaagaaacctgtatttttgctgaccacgagc  1507500                                                 <-------GAMYB                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              <---------ARR11(3)                          -----------                                        --------->CCA1(2)                                 <---------ETT(1)                                       --------->ARR14(2)                                 --------->ANAC46                                      <------ZmHOX2a(1)                               <---------ANAC58                                      =================HOX2a_HOX2a             --------->LBD16                                      ================HOX2a_HOX2a             --------->LBD16        <---------ANAC46      ------->TEIL    --------->ARR11(3)         --------->At4g35610  ------>NtERF2 ------->TEIL        <---------WOX13(1)<---------ARR14(2)             ---------->DOF2 <---------ANAC58 --->ZAT2       <----------DOF2      ----------->GT1           ----------->HVH21   <--------P<-------   tcgaacctcggcttggaactttgatttacatgtatcaagaggatacaagatcgttgtactcagaagcgacccaatagctcccgaggttgcttccgacacc  1507600                                                                                                   <-                                                                                                  ---                                                                                                 ----                                                                                             <-------                                                                                             --------                                                                                        --------->At4g35610                                                                                        <------MYB83-                                                                                       --------->MYB111(1)                                        --------->MYB52(1)                             <---------MYB46(3)                                      <---------MYB52(2)                               <---------AtMYB61                                   --------->DEAR3(1)                                  --------->MYB55(2)                         <------ZmHOX2a(2)                     --------->ANAC46        --------->MYB46(2)                        <---------ARR14(2)                    ------>ZmHOX2a(1)        --------->MYB111(2)                <---------CCA1(2)  <----------ID1      <---------ANAC58                --------->MYB59            --------->ANAC58  ----------->RAV1(1)      <---------ANAC46               <--------P <---            --------->ANAC58 ----------->HVH21         <---------ANAC58               <---------MYB55(1) >HVH21    ------>NtERF2--------->ARR14(2)       <---------TOE2(3)   --------->HSFB2a(2)<------MYB46(1) --ALFIN1 <---------ALFIN1------>ZmHOX2a(2)      <---------TOE1(3)   <---------HSFB2a(2)----------->GT1   gattccaaatcgacacccatctctccgatctgcgacagcgacgaacagattgaggttgtgtgtcctcgcctctgggaagacaatttgggtaggtgaaatc  1507700                                                        --------->DOF5.7(2)                                                     <------NtERF2                                                    <---------RAP2.3(1)                                                    ------>NtERF2                                                   <---------RAP2.3(2)        --------->YAB1                             <---------RAP2.3(3)        *TSS                                  --------->YAB1        <---------MYB52(1)              -       <------ZmHOX2a(2)                      <---------ICU4        --------->ARR14(2)        ------- --------->DAG2                               <------------CBF      <---------ARR14(2)        <------ --------MYB52(1)                           <---------YAB1         <-------GAMYB             <------- ------>LBD16                            ------------>CBF          <---------RAP2.6(3)       ======== ----->ANAC55(2)                       <---------O2<---------DEAR3(1)                 <---------ANAC58 --GLK1(1)    --------->ARR11(3)  ---------->DOF2 --------->RAP2.6(3)                 <---------ANAC58 ->GLK1(1)  <---------YAB1  ----------->GT1 --------->ICU4<---------DOF5.7(2)  --------->CCA1(2)    < --------->DOF2        <---------LBD16 --------->O2<---------RAP2.6(2)      ----------->ARR10<------- ------ANAC55(2)      <---------LBD16 <-----------STF1<---------ANAC46  <---------At4g35610  <-------   cgtaaagcgatcatatgattttgcctcgggagtttaaaaagacgtcaatattgacggcgttaacatcgccgttatgctgagatttgatgcttctctctct  1507800    --------->ZAT14    <---------ZAT14 <------MYB46(1) <------MYB83                                <---------AHL20(2) -------->MYB59                          ----------->GT1 -------->AGL15                          --------->YAB1 ---------AGL15                      <---------AHL20(2) ----------AG                  ----------->GT1 =================================================================================MADS_MADS ---------------AtSPL8      <-----------GT1 --------->AHL20(2)    <---------------AGL15 ----------AGL3      <---------TOE2(3)  ----------->GT1          <-----------------AGL3     --------- ----------AGL1      <---------TOE1(3)  <---------YAB1    ---------->DOF2                ----------->GT1   atttggtacacagacattggtttaaagtttaaaccgtataaaatgataaaattacaagaagaaagttgatatatatggcattgcaagaagaaagtatatt  1507900                                                     --------->At5g28300                                       --------->ANAC58                                       --------->ANAC46                                       --------->ANAC58--------->MYB52(1)                <---------At4g35610                                   --------->ANAC46--------->ZAT6                        --------->At4g35610     <-------TEIL          ---------->DOF2    --------->TOE2(3)           --------->ANAC58 <-------TEIL            --------->ANAC58     --------->TOE1(3)           --------->ANAC58 >AHL20(1)               --------->ANAC58  ----------->RAV1(1)---------->DOF2    <-------TEIL    ----   acatacatacatacaatttctaaatggacgaaagtaaacacaagccaacattaacagtaactgataaagagggtttaagcaaatacatttctgatgaaga  1508000                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                                   --------->AGP1                 --------->At4g35610                                       <---------ARR14(2)                --------->ARR11(3)                                         --------->ARR14(2)       ----------->GT1                                                  <------NtERF2      ----------->GT1                                                 <---------DEAR3(1) ---------->DOF2<---------ARR11(3)                                  <---------ANAC58 ------>DOF2---------->DOF2  <---------YAB1     <----------DOF2     <---------ANAC58<------ZmHOX2a(2)   aaagaaagaagataaaaagagcttacgagttacgataaactgaacttcccctttgtattctgaaacacttgctcggcgatactcagatcgagttttgtaa  1508100                           --------->ANAC58                           --------->ANAC58                           <---------ALFIN1                           --------->ANAC46                         ------>MYB46(1)                         ------>MYB83                         --------->MYB52(1)                        --------->MYB55(1)                   --------->ANAC58                       <---------MYB55(2)                    --------->ANAC58                       --------->MYB46(3)          <------ZmHOX2a(2)                      --------->ANAC58            <---------ARR14(2)                      --------->ANAC58            --------->ARR11(3)                      --------->ANAC46            <---------ARR11(3)                   --------->At4g35610            --------->ARR14(2)                   <---------At4g35610          ----------->ARR10              <---------TOE1(3)     --------->ANAC58        ------->TEIL     --------->At4g35610-----              <---------TOE2(3)     --------->ANAC58  ------>ZmHOX2a(1)   <---------At4g35610--------              <---------YAB1        --------->ANAC46------>ZmHOX2a(2)  ---------->DOF2       --------         <---------ZAT6<---------MYB52(2)   --------->At4g35610 --------->MYB52(1)   <----------DOF2   tctctaggttagagttatggtagcacccaacgcctctcacaccatctgctaagatcctattgaacccaatggctaaagctgcttcgactttcgcctcgta  1508200  Previous    Next  AGI:  At3g05290.1    Description:  mitochondrial substrate carrier family protein. similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G27520.1); similar to mitochondrial FAD carrier [Cucumis melo] (GB:ABR67418.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067) Range:  from: 1505896    to: 1507708    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05300.1    Description:  cytidine/deoxycytidylate deaminase family protein. similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT5G28050.2); similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT5G28050.1); similar to deoxycytidine deaminase [Brassica oleracea] (GB:AAL67435.1); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain APOBEC/CMP deaminase, zinc-binding; (InterPro:IPR016192); contains InterPro domain Cytidine deaminase-like; (InterPro:IPR016193) Range:  from: 1508030    to: 1508617    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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