Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ANAC55(2)                          <----------DOF2                          <---------DAG2                       =================HOX2a_HOX2a         --------->MYB52(1)                 <-----                       ------>ZmHOX2a(1)              ----------->GT1                  ---------->DOF2               --------->TOE1(3) <------ZmHOX2a(2)<------ZmHOX2a(1)----------->GT1  --------->TOE1(3)               --------->TOE2(3) ========================HOX2a_HOX2a                --------->TOE2(3)   acagcattccatataaaccctaatcctacttttagatcacataagaaatacaggagaagaaaaaacagagagataaactacaatagccttaaaactctgt  1415800                                                                                            <--------                                                                                            ---------                                                                                     ----------->RAV1(2)                                                                                    --------->MYB52(1)                                            ----------->GT1                     <---------AHL20(2)         <---------ARR14(2)                --------->DAG2                      --------->AHL20(2)         --------->ARR14(2)   --------->ANAC58                              <---------RVE1(1)       -    <---------YAB1            --------->ANAC58     <---------ALFIN1        --------->ARR11(3)      -- ------HVH21           <---------GLK1(2)  ---------->DOF2--------->REM1(2) <---------ARR11(3)   -----   ccgagtatgagtattcgaaactccacaatctccagcaagaatggaaaagtgaaacaccgtgaagagagaagatgagagatattaaatacctgaagagtta  1415900           <-----------HVH21          <---------ANAC58          <---------ANAC46          <---------ANAC58      <---------ZAT2      --------->ZAT2      --------->At4g35610 -ZAT6<---------At4g35610 -->GT1  <-------TEIL                                                      <---------YAB1 --------->DOF2                                  <---------ATHB12       *TSS                        - ------->YAB1                                  --------->WOX13(1)      <-------GAMYB            ----- ---->WOX13(1)        <------ZmHOX2a(1)  --------------->AtSPL3       --------->ALFIN1---------->DOF2   atcaaagcagctgcgtgagagagaggaagaagatgaagacggagacggacaatcacttagggttttaagagtgtgttgttatagcagttaaagacgagcc  1416000                <---------ANAC46               ------>NtERF2                                       <---------TOE2(3)               --------->LBD16                                     <---------TOE1(3)               <------NtERF2                                       <---------YAB1               <----              <---------ANAC46                             <---------TOE1(3)                    -----           --------->ANAC46                          <---------TOE1(3)                      <--------       ---------->DOF2                               <---------TOE2(3)                      <-------- -------->HSFB2a(1)<------------CBF --------->HSFB2a(2)    --------->MYB59               ----------->GT1 ---->DEAR3(1)--------->DEAR3(1)    <---------HSFB2a(2)    <---------TOE2(3)    ----------->HVH21   -   gagccttcttaaaacgccgcgtattgtaaggggtatttctataacttccatagttagggtttaggttttaagattaatgggcctgactgaatggatattt  1416100                              <---------ANAC58                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                  <---------AHL20(2)                  --------->AHL20(2)                  <---------YAB1    <------------CBF                 --------->YAB1     --------------------->WRI1                 --------->TOE2(3)<---------AHL20(2) -----AHL20(2) <---------AHL20(2)<----------DOF2 ---->AHL20(2)--------->YAB1  <---------ANAC58                         <-----------GT1 -RVE1(1)    <---------YAB1<---------DEAR3(1)                    <----------DOF2       <-----------RAV1(1) -CCA1(1)  --------->YAB1 --------->ALFIN1                     ---------->ID1<---------MYB52(1) ---------->RAV1(2)     <---------ANAC55(2)           *TSS    <-----------GT1<----------DOF2   taatctggcccgtttataatattaatacgtgggcgttttattgttctcttcccccttaatagtttttcttttttaatccctttgtttctctgtggtattc  1416200                                         ----------->GT1                                       <-------TEIL                                     <---------SPL7                           <---------ANAC46                                   <---------TOE2(3)                          <---------ANAC58                             <---------HSFC1(2)                               <---------ANAC58               <---------AHL20(2)  <---------------AtSPL3         <---------LBD16         --------->HSFB2a(2) --------->HSFC1(2)     <-----------GT1    <--------P   aacaaatttgtctcgaatttatagagctcgaagcttcaaggtacggtttcaaattttctcgttgattttctgggtagatagcgttttccatacttctctt  1416300                                                             --------->LBD16                                                          <------ZmHOX2a(2)                                                         --------->ARR14(2)                                                         --------->ARR11(3)                                                         <---------ARR14(2)                                                     <---------LBD16          <---------ANAC58                                                     --------->LBD16          <---------ANAC55(1)                                                    <---------ANAC58  <---------YAB1      -----------                                                    <---------ANAC58--------->YAB1       <---------TOE2(3)                                                    <---------ANAC55(1)       <---------ANAC46                                                    <---------ANAC46<-----------GT1      <---------TOE1(3) <---------DAG2                         <---------At4g35610  ------>ZmHOX2a(1)<---------ANAC58 <----------DOF2                        --------->At4g35610------>ZmHOX2a(2)  --------->ANAC55(2)   caactttatttcatagtatagctctgattttgctaaaacttcatctgattagttccgtggatcctgaaaatcacgattttgcgtgttgtttagggttata  1416400                                                                                      <---------ANAC58             <---------YAB1                                              <------ZmHOX2a(1)           --------->ATHB12                                    ------>MYB46(1)   <---------ICU4        <---------ANAC46    --------->At4g35610                ------>MYB83----------->GT1   --------        <---------ANAC58    --------->ZAT2                   <---------MYB59     --------->YAB1 --------->ZAT14            <---------ZAT2                   --------->TOE2(3)  <---------YAB1 <---------ZAT14 <---------ZAT6       <---------ZAT6        ----------------->AG--------->ICU4     -- >GT1   <---------ANAC58   --------->GLK1(2)       <---------ANAC46   <---------AtLEC2<---------ANAC58   ctctgtagttgtgtgattagtgtttgaagaagctgggctagtgttcgatgtttacgtcgataacctaattttgcaggaagttataatggctagtgaagat  1416500                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                            <------ZmHOX2a(1)                                                         <-----------RAV1(2)                      <---------ANAC46                   <---------LBD16                     <---------At4g35610              --------->ZAT2                               <-                  <---------At4g35610                 <------NtERF2                             <----  --------->ATHB12--------->At4g35610                 <---------At4g35610                 <------ZmHOX2a(1) ->ICU4      --------->DAG2            ---------->DOF2--------->At4g35610   --------->ANAC58    ----- ----->TEIL ---------->DOF2---------->DOF2            <---------ZAT2        --------->ANAC58   ------   gaatcgattgaacaaaaagctgctgctcgtaaagaggcacttaaagctctaagggcagctcaggaactgtctgagaccaaggaagacggagaggatgaag  1416600                                                                                    <----------DOF2                                                                                   <---------ANAC58                                                                              <-------GAMYB                                                                             --------->ALFIN1                                                                             <-----------RAV1(1)                                                                           <---------ANAC46                                                                           <---------ANAC58                               <---------ANAC58          ------->MYC2      <---------ANAC58         <                               <---------ANAC58          <-------MYC3    <---------ANAC46           - ----------HVH21           <----------DOF2               ------->MYC3 <-----------RAV1(1)           - -----At4g35610     <----------DOF2          <---------ANAC58        <---------TOE1(3)            <-- ---->At4g35610    <---------ANAC58          <---------ANAC58   <---------MYB46(3) <---------ANAC58 < ->TEIL            <---------ANAC58   <---------YAB1     <-------MYC2<---------TOE2(3)   --------->YAB1   ctgtcgaagaagagtgagtttgctttgttctttgcttattttgtttgtcttgactagcacatggagttgttaatgttgtgtgttggctttagcataacta  1416700  Previous    Next  AGI:  At3g05060.1    Description:  SAR DNA-binding protein, putative. Identical to Probable nucleolar protein NOP5-2 (NOP5-2) [Arabidopsis Thaliana] (GB:Q9MAB3); similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G27120.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73717.1); similar to matrix attachment region binding protein [Beta vulgaris] (GB:CAK22424.1); similar to MAR-binding protein [Nicotiana tabacum] (GB:BAB41076.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOSIC (InterPro:IPR012976 Range:  from: 1412873    to: 1415972    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05070.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO62046.1); contains InterPro domain mRNA splicing factor, Cwf18 (InterPro:IPR013169) Range:  from: 1416154    to: 1417812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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