Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                             ------>ZmHOX2a(2)                 <-----                                                            <------ZmHOX2a(2)                 <------       <---------At5g28300                                 <---------ARR11(3)                 -------  --------->ATHB51                                         --------->AGP1                  <---------ARR14(2)  --------->AHL20(2)                                       --------->ARR11(3)              --------->ARR14(2)  -------->ATHB1                         --------->AHL20(2)<---------AGP1               --------->ANAC46 --------->ICU4     --------->ANAC58  --------->YAB1       <---------ARR14(2)           --------->ANAC58 <---------ATHB51   --------->ANAC58 <<<<<<<<<ARR1         --------->ARR14(2)           --------->ANAC58 <---------YAB1--------->DAG2        <<<<<<<<<ARR2        <---------CCA1(2)     --------->ANAC46 -->AtLEC2    ---------->DOF2        <---------ATHB12  <---------ZAT14   --------->YAB1<---------LBD16   acaattattcacagccaaaagtaagcattcacttccacaatcataaattcaattgactgtagatctagattacaaccagaacacaaaaccacggatttta  1392600                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                    <---------ARR11(3)     --------->ALFIN1                                                               <-----------ARR10     <-----------RAV1(1)                       <----------ID1              ---------->DOF2    <-------MYC3                          <---------ICU4              <---------YAB1--------->ARR11(3)    ------->MYC3                          -------->ATHB1            <--------HAHB4  --------->ARR14(3) ----YAB1            --------->GLK1(2)    --------->ATHB12          <---------ICU4  <---------ARR14(2) ----AHL20(2)       <---------GLK1(2)    <---------YAB1             --------->YAB1  --------->ARR14(2) ---AHL20(2)  <------ZmHOX2a(2)      --------->AHL20(2)            --------->ICU4   <---------ARR14(3) -->AHL20(2) <-----------HVH21       <---------AHL20(2)            <---------YAB1 ----------->ARR10--   attccatgtgttgccgatcacagaatttgaaactagaaataaaatcattggaacaaaaacataaaactgatcattactaaagcgaagatcttctatgtta  1392700                                                                           --------->TOE1(2)                                                                          --------->YAB1                                                                     <---------YAB1                  <------ZmHOX2a(1)                                <---------ICU4             <-----------TGA1                                      --------->YAB1<------ZmHOX2a(2)             <-----------HVH21                                    <---------YAB1<---------ARR11(3)            <---------ANAC58                                     --------->ARR11(3)            <---------ANAC58                             ------->GAMYB    ----------->GT1  ------>ZmHOX2a(2)           <-------TEIL--------->AHL20(2)             --------->MYB52(1)------->TEIL      <------ZmHOX2a(2)         --------->TOE2(2)                 --------->ANAC58      <---------ARR11(3)---------->DOF2         --------->TOE1(2)   --------->ANAC46   ----------->GT1 --------->YAB1  --------->ARR11(3) ------->ANAC46<-----------RAV1(2)         --------->ANAC58    --------->ICU4<---------TOE1(2)  <----   cacataataaacatgcgtcaggagtttatatacgataacaagagcaggcatggaaacaacgggaaatgatcatgaatcgtaagatcaaagcgatctctaa  1392800                        --------->CCA1(2)                       <---------ARR14(2)                                             <---------ANAC58                       --------->ARR14(2)                                             <---------ANAC55(2)                       <---------ARR11(3)                                             <---------ANAC46       <---------AHL20(2)                                                             ----------->GT1   ----------->GT1     --------->ARR11(3)                                    <------NtERF2     ------  --------->ICU4     ----------->ARR10                                      >>>>>>>>>>>>>>>>>LFY -----TOE2(3)---------->DOF2  <-----------GT1                  --------->At4g35610    <---------ANAC58   ggcaattgttaaaatgaaagaagaagatttgattaccagacaagaagtttgcaatgagacagaagcgctgaattgagtcgccattgtttcgtgaaacacg  1392900                       --------->CCA1(2)                  ---------->DOF2                        <---------ZAT14                --------->ETT(2)                      <---------ANAC46                <---------ETT(2)                      <---------ANAC58            ------>ZmHOX2a(2)                   ---------->DOF2          --------->ARR14(2)                --------->ZAT18         <---------ANAC58          <---------ARR14(2)                <---------ZAT18   --------->ZAT14          --------->AGP1                    <---------ZAT14   <---------ZAT14          <---------ARR11(3)                --------->ZAT14 *TSS    <---------ANAC58     <---------ARR11(3)          --------->ARR11(3)               ----------->GT1 <---------At4g35610           --------->ARR11(3)         <---------GLK1(1)              <------NtERF2 <---------ANAC58 <---------At4g35610         --------->GLK1(1)            <---------DEAR3(1) --------->ZAT18    <----------DOF2        ----------->ARR10--------->ALFIN1<---------ANAC46--------->ZAT14    ========================= --->ANAC46<------ZmHOX2a(2)         <---------------------WRI1    --------->ZAT2  --------->YAB1<---   agagagagaagagatctgtcgaaagagatggggagagagggcggagtgtacaaagagcgtgaactgctctgcttgctgctttcatttataagctcttccc  1393000                                                                           ------->PIF4                                                                           <-------PIF4           <---------bZIP60(1)                                             <-------MYC3           =====================================bZIP_DOF                   <-------PIF5           ====================MYC_MYB                                     ------->MYC2           --------->bZIP60(1)                                             ------->PIF5           <---------TGA1a                                                 ------->MYC4           --------->TGA1a                                                 <-------MYC4           --------->O2                                                    <-------MYC2           <---------O2                                                    ------->MYC3        =============MYC_MYB                                              <---------ANAC58        ----------->HVH21   --------->YAB1                                --------->O2        ------->GAMYB  ------------>CBF                                   <---------O2        --------->ANAC46   <---------ATHB12      <---------WOX13(1)       --------->TGA1a       --------->DEAR3(2) ------>MYB83        <---------YAB1              <---------TGA1a--------->LBD16       --------->MYB46(3) ------>MYB46(1)   <---------ICU4                <---------ANAC55(2) -------       <---------MYB55(2)--------->WOX13(1) --------->YAB1                <---------ANAC58   --------      --------->ANAC46------>MYB83         --------->ICU4<---------At4g35610         <-----------GT1    <---------ALFIN1  -------->P         --------->TOE2(3)                --------->ANAC55(2)<-------  <-----------HVH21   ------>MYB46(1)--------->GLK1(1) =============================MYC_MYB<---------GLK1(2) ====================bZIP_DOF        ===============================================bZIP_DOF<-------- ------ALFIN1  <---------SPL7        <----------DOF2   ---------->CDC5  <-----------GT1<---------LBD16   ctcccttcacccgacgtcgttccctaccaatcacatgggctttccataatgaatgactcagcccatttcgcatttcacgtgccaatttaaccggattatt  1393100                                                        ------>ZmHOX2a(2)                                                       <------ZmHOX2a(2)                                                      <---------ARR14(2)                                                      --------->ARR11(3)                                                  <---------ATHB12                                                 ------>MYB46(1)                                                 ------>MYB83 ------->GAMYB                                                --------->WOX13(1)                                             --------->SPL7--------->MYB52(1)                                           <---------SPL7 ------>ZmHOX2a(1)                                         --------------->AtSPL3                                       ------>MYB83--------->YAB1 --------->At4g35610                                       ------>MYB46(1)<---------ARR11(3)                          ---                                       --------->MYB52(1)<---------MYB59                         ---- -->KAN4(2)                          <---------MYB59  --------->ARR14(2)                         ---- ->KAN4(1)                           --------->AtMYB61<---------GLK1(2)          <---------ARR11(3) --KAN4(1)              <---------TOE2(3)--------------->AtSPL8   <---------At4g35610           ----- -KAN4(2)    <---------AHL20(2)     --------->MYB46(3)--------->AGP1  <---------ZAT6          -------   ctattcatacagttttttattctattgacgaaaatcgaaccaaaccgtaccaatcagatcctaaccgaagcagagttagtcaagttctaagttctgacca  1393200                                                                                          --------->ANAC46                                                                                          --------->TGA1a                                                                                          <---------O2                                                                                          <---------TGA1a                                                                                          --------->ANAC58                                                                                          --------->O2     ------->GAMYB                                                                        --------->ANAC58    --------->MYB46(3)                                                                    --------->ANAC55(2)    <---------MYB52(2)                                                                    --------->ANAC55(1) ------>MYB46(3)                                                                        <---------ALFIN1 -->MYB83                                                                             <---------ALFIN1 -->MYB46(1)                                                       --------->YAB1------->TEIL ------>RAV1(1)      ----------->GT1                     ===========================================bZIP_DOF -->MYB46(3) <---------ATHB12      <--------P            ---------->DOF2     ----------------------->TaNAC69(2)   acaacaacaaaccccatgatgcatagtcaaaaacttggtagtttttttgttaaacaaaacaaagactaatagtaacacacatgaacccccacacgtctct  1393300           <---------HSFB2a(1)           --------->HSFB2a(1)           <---------HSFC1(2)           --------->HSFC1(2)             --------->HSFB2a(2)    --------->TOE1(2)                     <---------HSFB2a(2)                   <-----------GT1     <    --------->TOE2(2)           --------->YAB1                     <----------ID1 --------->REM1(1) -   ----------->GT1              <-----------GT1     ----------->GT1----------->GT1--------->ANAC46  <   <---------ANAC55(2)       <---------ICU4         <---------ANAC55(2)    <-------TEIL             -   --------->ANAC58          --------->YAB1      --------->GLK1(2) --------->ANAC58                 <   --------->ANAC58 <---------YAB1      <-----------GT1            --------->ANAC58                 -   caaaaacgtaagaagcttcttcatcatcgaataataacaaatttacagaagaatatgtaaatttgaagaacgaaaaatacatttacatcaccaatactag  1393400 --------------->AGL15 <---------------AGL15                                                            <---------At4g35610 -----------------AG                                                            <---------RAP2.6(2) ---------------->AGL1                                    ------>ZmHOX2a(1)<---------ICU4 -----------------AGL1                                    =======================HOX2a_HOX2a ---------------->AGL2                          --------->ARR11(3)        <------ZmHOX2a(2) -----------------AGL3                          <---------ARR11(3)       --------->ARR11(3)     <---- ---------------->AGL3                         <---------CCA1(2)         <---------ARR11(3) <--------   tcaccataagagggaagagcaagaagaagttttttggttaagtttctatatatctttctcctcaaggtttactaagatcatggctgcttctctcagtcgg  1393500  Previous    Next  AGI:  At3g05020.1    Description:  ACP1 (ACYL CARRIER PROTEIN 1). Identical to Acyl carrier protein 1, chloroplast precursor (ACP-1) [Arabidopsis Thaliana] (GB:P11829); similar to ACP5 (ACYL CARRIER PROTEIN 5), acyl carrier [Arabidopsis thaliana] (TAIR:AT5G27200.1); similar to acyl carrier protein [Brassica rapa] (GB:CAA49802.1); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein-like (InterPro:IPR009081); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) Range:  from: 1391638    to: 1392960    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g05030.1    Description:  NHX2 (sodium proton exchanger 2); sodium:hydrogen antiporter. Identical to Sodium/hydrogen exchanger 2 (NHX2) [Arabidopsis Thaliana] (GB:Q56XP4;GB:Q9CAW6); similar to NHX1 (NA+/H+ EXCHANGER), sodium ion transmembrane transporter/ sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G27150.1); similar to NHX4 (sodium proton exchanger 4), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT3G06370.1); similar to sodium proton exchanger [Thellungiella halophila] (GB:ABF48496.1); similar to Na+/H+ antiporter [Thellungiella halophila] (GB:ABJ97691.1); similar to Na+/H+ vacuolar antiporter [Brassica napus] (GB:AAO38856.1); contains Int Range:  from: 1393304    to: 1396790    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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