Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------AHL20(2)                                  --------->ANAC58                                     --------->AHL20(2)                                   --------->ANAC55(2)                                 <---------YAB1      --------->LBD16                      --------->ANAC58                                 --------->ICU4     <---------HSFB2a(2)                   --------->ANAC55(1)                            <---------GLK1(1)       <---------ANAC55(2)                   --------->ANAC46                   <----------DOF2   <---------AHL20(2) ---------->DOF2                  <---------LBD16              <-----------GT1 <---------YAB1        --------->HSFB2a(2)        <----------DOF2   <--- ----------------ANAC81    <---------ARR11(3)       <---------ANAC46       --------->KAN4(2)     <--- ---------------ANAC81     --------->ARR11(3)      <---------LBD16<------ZmHOX2a(1)<-----------GT1   ttttttttggattttgtcactcttttatagatatcatttttaaattcttgtattccggaaaagagagaggattagtttattcttttaatcacacggatta  1369100                                                                <---------ZAT14                                                                <---------ZAT18           --------------->AGL15                     --------->MYB52(1)           --------->TOE2(3)                       --------->MYB46(3)          --------->At4g35610                   <------ZmHOX2a(1)    <---------YAB1                         <---------ANAC58     --------->ZAT14  ----------->GT1       --------->YAB1<---------ICU4 ---------->DOF2 --------->ANAC46 ------TOE2(3)         <---------ATHB12    <---------ANAC46   --------------->AtSPL8              <-- ------TOE1(3)       --------->WOX13(1)    <---------ANAC58 <-----------------------TaNAC69(2) ------   agggttgtaattagcttaattagcaatcatagtggcaaaaacattgcttaggaaccaaaggagcagtgtacaaatcacagactccaactccattgtgcaa  1369200                                           <-----------HVH21          ------>MYB83                                          <---------O2                -------->P                                          --------->O2<---------CCA1(2)                                          ===========================bZIP_DOF                                          --------->TGA1a             ------>MYB46(1)                                          <---------TGA1a            ------>ZmHOX2a(1)       =============================================bZIP_DOF  <---------ANAC58       <----------DOF2                    --------->ANAC46<----------DOF2       <---------DAG2                     =====================================MYC_MYB       -------- ---------HVH21               ------>ZmHOX2a(1)       --------->GLK1(1)                <----------DOF2 ---->DOF2            ---------->ID1      --------->bZIP60(2) <---------ANAC58        --------->TOE2(3)   agtcagacacttttctctgcatttgtcttctccttcacaagtccacgtctggtcgcatttctttgcttctcctaccatcttcttgtttcctttattcatc  1369300                                                                                                    -                                                                                                    -              <---------AHL20(2)                  <---------------AGL15                         <----           <---------AHL20(2)                     --------------->AGL15                     <--------      --------->ICU4     --------->ANAC55(2)      <----------DOF2                        <-----------GT1  --------->TOE2(3)    <-----------GT1           <-----------------AGL3            <---------TOE2(3)- ->YAB1   --------->AHL20(2)                     <-----------------AGL2 <-----------GT1 <-----------GT1   aaaacataaatattaaatatttgttttacatatttcatcttcttctcagtttctttttttggagggtctaaattttaccagttttaagttttaactttta  1369400                                    <---------AHL20(2)                               --------->AHL20(2)                            --------->AHL20(2)              --------->ARR11(1)    --------->AHL20(1)                    --------------->AGL15              --------->ARR11(3) --------->AHL20(2)                       <---------------AGL15   >>>>>>>>>>GT-3b          <---------AHL20(2)                           ----------->RAV1(2) -------->ANAC58        --------->CCA1(2)       --------->YAB1           ----------------->AGL1 -------->ANAC58  <-----------HVH21 <---------AHL20(1)     <---------AHL20(2) -------GT1   <---------ARR11(3)<---------AHL20(2)         --------->AHL20(1)       --------->CCA1(2) --DOF2   ---------->DOF2  --------->AHL20(2)   --------->AHL20(2)     <-----------GT1----------->GT1 ---------->GT1--------->CCA1(2)--------->AHL20(2)         --------->AHL20(2)   >>>>>>>>>TBF1      --   acaagaaaaatacaaagatatgtcagatataaaattaatatatcagacaattaaaacaaaataaaatagcaatttacctgaagaagaaatgagaaaaaca  1369500     <---------------AtSPL8     <---------ICU4    --------->ICU4  <--------HAHB4  --------->ATHB12  --------->ATHB51  <---------ICU4  <--------ATHB1  --------->YAB1                                                                                   -- --------->ICU4                                                                                    <- <---------ATHB51                      <-----------RAV1(1)                                        <-- <---------ATHB12                    <----------DOF2                                   ------------>CBF --------->AHL20(2)        --------->ARR11(3)         <------------CBF                <-----------GT1 ------->YAB1              <---------ARR11(3)   <---------HSFB2a(2)         --------->GLK1(2)     ---   acaataattagtacgaagagaatggaagagttcttcattctttgtgggtttgggaagattgaaacgaagacttctaagtttctgatgtttacaattttca  1369600         <---------AHL20(2)         <-----------TBP         --------->AHL20(2)                                 <---------AHL20(2)       ----------->TBP                                     --------->AHL20(2)     --------->AHL20(2)                                    <---------AHL20(2)    <---------YAB1                                         <---------AHL20(1)  --------->YAB1           <-----------GT1             --------->ICU4 <---------YAB1--------->ANAC46  <-------GAMYB    --------->ANAC58                           -------- ------->GLK1(1)         <---------AHL20(2)       --------->ANAC46                           <------- --------GLK1(1)      --------->AHL20(1)          <----------ID1                             <------- -------ARR11(3)      --------->AHL20(2)          --------->ANAC58            <---------ANAC46 ------>ARR11(3)      <---------AHL20(1)        --------->MYB52(1)           ---------->ID1<---------   gatatcattatatatataggcaaatattttaactccgttgaagaaaaacaaaacgacataatttttttttgttttgtttttcgtctatttgttatttata  1369700                     --------->YAB1                           --------->AHL20(2)                 --------->AHL20(1)                           <---------AHL20(2)                 <---------AHL20(1)                           --------->AHL20(1)                 <---------AHL20(2)                          <---------AHL20(2)                 --------->AHL20(2)             --------->AHL20(1)     --------->GLK1(2)                          <---------AHL20(1)    <---------ARR14(2)  --------->ZAT6          --------->ARR11(3)    <---------GLK1(2)<---------ICU4             <---------AHL20(2)    --------->ARR14(2) <---------YAB1         <---------TOE2(3)  ----------->ARR10 --------->ICU4           --------->AHL20(2) <------------CBF           <---------ANAC58 ->AHL20(2)     <---------AHL20(2)           --------->YAB1  --------->AHL20(2)            <---------ANAC58 --AHL20(2)     --------->AHL20(2) <---------AtLEC2       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <- ----TBP    --------->AHL20(2)   --------->ANAC58        --------->AHL20(2)     <---------YAB1    --- --TBP      ----------->TBP      --------->ANAC58   ----------->GT1      <----------DOF2 <---------YAB1   taagtagattctctataaataaattatgactagataagcatggacattaatattttgtataaattaaattgtatactttgttatgtttgctatgcttgtc  1369800                                                  --------->AHL20(1)                                                  <---------AHL20(1)                                                  <---------AHL20(2)                                                  --------->AHL20(2)                                                 <---------AHL20(2)                              ----                                                 --------->AHL20(2)                              ----                                             <---------AHL20(2)                                 <xxxx                                             <---------YAB1                                     xxxxx                                             --------->AHL20(2)                                <xxxxx                                            --------->AHL20(1)       --------->AHL20(1)       <xxxxxx                                  <---------AHL20(1)                 <---------AHL20(1)    <xxxxxxxxx                                  --------->ARR11(3)                 <---------AHL20(2)    xxxxxxxxxx           <---------YAB1         <---------ARR11(3)       <---------AHL20(2)              <xxxxxxxxx  <---------AHL20(2)              --------->AHL20(1)  --------->AHL20(2)                  <xxxxxxxxxx  --------->AHL20(2)              <---------AHL20(2)  --------->AHL20(1)               <xxxxxxxxxxxxx  --------->ATHB51                --------->AHL20(2)  <---------AHL20(1)             xxxxxxxxxxxxxxxx  --------->ATHB12               --------->AHL20(2)   <---------AHL20(2)  <---------AHL20(2)<xxxxxxxx <---------AHL20(2)       ----------->GT1   --------->AHL20(2)       --------->AHL20(2)<xxxxxxxxxxxxx --------ICU4          <----------DOF2      <---------AHL20(1) --------->TOE2(3)   <xxxxxxxxxxxxxxxxx ------>ICU4           --------->TOE2(3)   --------->YAB1<---------YAB1  --------->AHL20(2)<xxxxxxxxx   aaaattatttgttatatttgtcaaactttagtaaaatatattcaaatataattaaatttattaaaacttaataaatttaaaagttttttttgtttggaga  1369900                                                                                <---------MYB59                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   ----------->HVH21           --------->ANAC46                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->YAB1                       xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->ANAC58                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->ANAC58                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            ----- xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxx xxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ------>NtERF2 xxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ZAT2 xxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ZAT2 xxxxxxxxxxxxxsmallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------>MYB46(1)  -- xxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>MYB83------- xxxxxxxxxxxxxxsmallRNA(si3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->MYB52(1) xxxxxxxxxxsmallRNA(s2)                --------->ARR11(3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(le3)               <---------ARR11(3)      <-----------------AGL1      ---------- >smallRNA(i)     --------->MYB52(1)   <---------AHL20(1)     <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3)           --------->AHL20(1)<----------DOF2   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxsmallRNA(si3)       <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ANAC58 xxxxxxsmallRNA(si3)       --------------->AGL15<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ANAC46 xxxxxxxxxxxxxsmallRNA(si3)<---------------AGL15xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ANAC58   cgcactatctacattcaaaatacccgtttctattttttgaatatttttagggcctgaaactttttatccaaactggcctaaacccaactggacgcgacct  1370000  Previous    Next  AGI:  At3g04945.1    Description:  LCR18 (Low-molecular-weight cysteine-rich 18). Identical to Putative low-molecular-weight cysteine-rich protein LCR18 precursor (LCR18) [Arabidopsis Thaliana] (GB:P82732); similar to LCR40 (Low-molecular-weight cysteine-rich 40) [Arabidopsis thaliana] (TAIR:AT2G14935.1); similar to LCR39 (Low-molecular-weight cysteine-rich 39) [Arabidopsis thaliana] (TAIR:AT3G23167.1); contains domain PD683306 (PD683306) Range:  from: 1369120    to: 1369538    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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