Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->ANAC58                                                                  --------->ANAC46                                                                  --------->ANAC58            <------ZmHOX2a(1)                                                                  <---------ALFIN1         <---------                                                          --------->YAB1                   <---------LBD16                                                         <<<<<<<<<ARR2                 --------->ARR11(3)        <---------TOE2(3)                                <---------ATHB12              <---------ARR11(3)       ---------->DOF2       <----------DOF2           --------->WOX13(1)      <------ZmHOX2a(1) ----TEIL --------->YAB1<---------AtMYB61   <------ZmHOX2a(2)   <---------ALFIN1   ---------->DOF2   tcaatggattaaagataacaatagttttggtcttttggagatagagatcgagcttaacaatcaaacccacaccagcatgtaggataaaagaactcaggat  1368300                        <-----------GT1                  ----------->GT1                                   <---------AtLEC2                 ----------->GT1        <----------DOF2         <----------DOF2         <------ZmHOX2a(1)            <---------ANAC58   ------->TEIL                   --------->GLK1(1) --RAV1(2)  <------ZmHOX2a(1)         <---------ANAC58--------->AtLEC2            ------>ZmHOX2a(1)<-   gttgttttgaaggaggagatgggtaataacatgttccattgcctttgtagtcagccatgcacttctctttgcatttctcgtctccttcacaaatccatga  1368400                            <---------ARR11(3)              <---------ANAC58    <---------MYB52(1)            <-----------GT1 --------->ARR11(3)       <----------DOF2    <---------YAB1       <---------DAG2   --------->YAB1      --------->YAB1   <---------ZAT14     <---------ATHB12    <---------AHL20(2)            ---------->DOF2   --------->ZAT14   ================HOX2a_HOX2a                      --------->AHL20(2)   <---------ZAT18   ------>ZmHOX2a(1)    --------->AHL20(2)     <---------YAB1 ----------GT1<---------ANAC58------>ZmHOX2a(2)  --------->ZAT6 <-----------GT1 --------->ALFIN1  <--   attactacacttttttgcttctcctatcatgatcccgttttctatataataacacaaacacaagtttatcaatataaaagaagtggaaccattttgttat  1368500                                                                          --------->DAG2                       --------->TOE1(2)                            <--------P                       ------->GAMYB                              ----------->GT1                      <---------ATHB12                         --------->CCA1(2)                      --------->MYB46(3)                      --------->ARR11(1)                      <---------MYB55(2)                      --------->ARR11(3)                     -------->P            <---------AHL20(2) <---------ARR11(3)                     ------>MYB46(1)      --------->AHL20(2)  <---------ARR14(2)               --------->GLK1(1)          <---------AHL20(2)  --------->ARR14(2)            <---------ANAC58            --------->TOE2(3)  --------------->AGL15            <---------ANAC58          <---------ARR11(3)   <---------------AGL15            <---------ANAC46          --------->AHL20(2)  <-----------------AGL2         <---------ARR14(2)           <---------AHL20(1)  <-----------------AGL3         --------->ARR14(2)<------ZmHOX2a(1)              ===========================================    <-----------GT1  ------>MYB83     --------->AHL20(1)  <-----------------AGL1 --------->YAB1 --------DOF2--------->LBD16    ----------->RAV1(1)     ------>ZmHOX2a(1)---------->DOF2   cttttttctcagttccgagttccaaccaaggacacaacaaaatattaattttgtcatcctactagatatggtagataaagtgatcagaattagtatatca  1368600                             >>>>>>>>>TBF1                       <---------------AGL15                       --------------->AGL15                      ----------->RAV1(2)                      <---------ANAC46                      ----------------->AGL1                                         <----------DOF2                      <---------ANAC55(2)          --------->YAB1                 <---------ARR11(3)       ---------->DOF2--------->At4g35610   <----------ID1 ---------->DOF2        --------->ARR11(3)  --------->ICU4    <-----------GT1 --------->MYB52(1)  <---------YAB1        --------->YAB1 ======================================MADS_MADS   <---------ICU4           <-----------GT1 <--------   aacaatgtttaaagaaaaaatgttacctgaagaagaaataacgaaaacgacaataagtatgaaaagaagagaagagtttttcattatcttttggatttgt  1368700                                                                               <---------DAG2                                                                            ---------->ID1                                                                            <-----------GT1                                                                    --------->AHL20(2)                                                                --------->AHL20(2)                                                      --------->YAB1<---------AHL20(2)              -                                                    <-----------TBP--------->AHL20(2)               -                                        <---------GLK1(1)      --------->AHL20(1)                <---                                        --------->CCA1(2)      <---------AHL20(1)        <----------DOF2                                       --------->ARR11(3)      <---------ARR11(3)       --------->TOE2(3)                                       <---------ARR11(3)      --------->ARR11(3)     ------->TEIL <-                                       --------->ARR14(2)   --------->AHL20(2) <----------DOF2  ----- -GLK1(1)       --------->REM1(1)    <---------TOE2(3)<---------AHL20(2) --------------->AtSPL8 -----   gaatgttgagagtaggcttcaactaaatttgtttcttctaagatattcgactatatttataagaaaatatttaattttgtactttttgaacctttatatt  1368800                                          --------->AHL20(2)                                          <---------YAB1                                      --------->AHL20(2)  <---------YAB1                      <-----------TBP <---------AHL20(2)                   <---------AHL20(2) <---------AHL20(1)                 <-----------TBP<---------ARR11(3) --------->AHL20(1)               <-----------TBP  --------->ARR11(3) -------->YAB1                    --------->AHL20(2)                          <---------AHL20(2) -------->AHL20(2)              ==========================================================MADS_MADS ------AHL20(2)        <---------MYB52(1) <---------AHL20(2)              <---------------AGL15 --------YAB1<-----------GT1    --------------->AGL15           --------->TOE2(3)           --------- ---->AHL20(2)<-----------GT1<-----------GT1<------------CBF    <----------DOF2---------->DOF2 ---->ICU4  <---------AHL20(2)  <----------DOF2   <---------CCA1(2)       --------------->AGL15   tattatatttggattttatcgctctgttttttttctttatatatataattgtatatctaatttctactttagtttagcatttaaagcaaaaaaactgaaa  1368900                                                                                           <---------                                                                                        <----------DOF2                        <-----------GT1                                                <---------ANAC58                       <-----------GT1                                                 <---------ANAC58                <---------AHL20(2)                                                  <---------WOX13(1)                --------->AHL20(2)                                              <---------MYB52(1)             --------->ARR11(3)                                                --------->At5g28300             <---------ARR11(3)                                               ----------->GT1        --------->TOE2(3)                                               <------------CBF<---------DAG2        --------->TOE1(3)                <---------AHL20(2)        <---------DAG2<---------AHL20(2) --------->AHL20(2)<---------YAB1 --------->YAB1<----------DOF2    <----------DOF2 <------------CBF -->GT1 --------->TOE1(2)>>>>>>>>>MYB98  ---------->DOF2        <-----------GT1<-------GAMYB<--------   aaatttaaaaccttagattttatttttaacatattatcagcattaaaacgctttagatttctatttctactttatattgacagttaattgcttttttttt  1369000                                      <---------AHL20(2)                                  --------->ANAC55(1)                                     --------->AHL20(2)                                   --------->ANAC55(2)                                 <---------YAB1      --------->LBD16                      --------->ANAC46                                 --------->ICU4     <---------ANAC46                      --------->ANAC58                            <---------GLK1(1)       <---------ANAC55(2)                   --------->ANAC58                   <----------DOF2   <---------AHL20(2) ---------->DOF2                  <---------LBD16              <-----------GT1 <---------YAB1        <---------HSFB2a(2)        <----------DOF2   <--- ---------------ANAC81     --------->ARR11(3)       --------->HSFB2a(2)    --------->KAN4(2)     <--- ----------------ANAC81    <---------ARR11(3)      <---------LBD16<------ZmHOX2a(1)<-----------GT1   ttttttttggattttgtcactcttttatagatatcatttttaaattcttgtattccggaaaagagagaggattagtttattcttttaatcacacggatta  1369100                                                                <---------ZAT14                                                                --------->ZAT14           --------->TOE2(3)                         ---------->DOF2           --------------->AGL15                   --------->MYB46(3)          --------->At4g35610                   <------ZmHOX2a(1)    --------->ANAC46    <---------YAB1                         <---------ANAC58     <---------ZAT18  ----------->GT1       --------->YAB1<---------ICU4 --------->MYB52(1) ------TOE2(3)         <---------ATHB12    <---------ANAC58   --------------->AtSPL8              <-- ------TOE1(3)       --------->WOX13(1)    <---------ANAC46 <-----------------------TaNAC69(2) ------   agggttgtaattagcttaattagcaatcatagtggcaaaaacattgcttaggaaccaaaggagcagtgtacaaatcacagactccaactccattgtgcaa  1369200  Previous    Next  AGI:  At3g04943.1    Description:  LCR41 (Low-molecular-weight cysteine-rich 41). Identical to Putative low-molecular-weight cysteine-rich protein LCR41 precursor (LCR41) [Arabidopsis Thaliana] (GB:P82756); similar to LCR42 (Low-molecular-weight cysteine-rich 42) [Arabidopsis thaliana] (TAIR:AT3G23165.1); contains domain PD683306 (PD683306) Range:  from: 1368254    to: 1368684    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04945.1    Description:  LCR18 (Low-molecular-weight cysteine-rich 18). Identical to Putative low-molecular-weight cysteine-rich protein LCR18 precursor (LCR18) [Arabidopsis Thaliana] (GB:P82732); similar to LCR40 (Low-molecular-weight cysteine-rich 40) [Arabidopsis thaliana] (TAIR:AT2G14935.1); similar to LCR39 (Low-molecular-weight cysteine-rich 39) [Arabidopsis thaliana] (TAIR:AT3G23167.1); contains domain PD683306 (PD683306) Range:  from: 1369120    to: 1369538    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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