Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------O2                                     <---------AHL20(2)                                    <---------AHL20(2)                         <-----------GT1   <---------YAB1                        <-----------GT1 <-----------GT1                                             -   <----------DOF2   <----------DOF2--------->AHL20(2)                                          <---- --At5g28300    <----------DOF2     <---------AHL20(1)  <----------DOF2                   --------->ALFIN1 ---GT1    --------->KAN4(2)    <---------YAB1  <-----------GT1                        <---------TOE2(3)   tcagacttttgttcattccttttcttttacccttataatttttttcttattcacttggctatattgttgaatcactgatacggtttactaaggtgtgttt  1329300                                                --------->AHL20(1)                                                <---------AHL20(1)                                                --------->AHL20(2)            <---------AHL20(2)         --------->TOE1(3)            --------->AHL20(2)         --------->TOE2(3)                                            -        <---------AHL20(1)            ----------->GT1                                               <        --------->AHL20(2)           <---------TOE2(3)                                             --        --------->AHL20(1)       --------->DOF5.7(2)                                           ------        <---------AHL20(2)      --------->TOE2(3)                              <---------AHL20(2)  --     --------->YAB1             --------->TOE1(3)                        --------->ANAC58      <-----    --------->AHL20(2)         ----------->GT1  <---------AHL20(2)       --------->ANAC58   <-------- -------->AHL20(2)        --------->TOE2(3)  --------->YAB1              --------->AtLEC2  <---------AHL20(2) -----AHL20(2)            >>>>>>>>>RAP2.2 --------->YAB1              <---------ATHB12     --------->AHL20(2)   aatcaaataataaattaaactaattcaatctaaacgttaaacgttaataataaatttgtgaagttttagcaaatcatgcaatttatctaacaattaaata  1329400            <-----------GT1 -------->ARR11(3)                              --------->ARR11(3) ---------ARR11(3)                          ------>ZmHOX2a(1) ------->RVE1(1)                        <---------ARR14(2)                             --------->AHL20(2) --->AHL20(2)                           --------->ARR14(2)                   <----------DOF2 ------->CCA1(1)       --------->AHL20(2)  --------->TOE2(3)              <-----------GT1 ----AHL20(2)       --------->YAB1     <---------CCA1(2)              <---------AHL20(2) -AHL20(2)  --------->ZAT6             --------->GLK1(1)              --------->AHL20(2)         ----   aatatctatatttttcactaattcataaaatacaacttctcatatcctaaaatcatgtatggtatttgttttttaatttcttttcacatatatatagtat  1329500                                                                                                    -                                                                                                   <-                                                                                             --------                                                                    --------->ANAC58         <-------                                                              --------->At4g35610           ---------                                                       <---------PCF2 --------->AHL20(2)    ---------    <---------YAB1                                   <---------ZAT18----------->GT1         <--------  --------->YAB1              ---------->DOF2        --------->ZAT18--------->ANAC58        <-------- ------->GT1             ----------->GT1       --------->TOE2(3) <-------TEIL   <----------DOF2   <--   ggttttataatcgatttcagactcaagtggaaaaaagaaatattggacaccttagtgggccattagatgcaagtaaatacaactttaggcttagtccatt  1329600                                                                                   <---------SPL7                                                                                  --------->DEAR3(1) ---------->GT1                                                                   <---------ANAC46 --------ZAT6                                                                    <------NtERF2 ------->AGL15                                                                   --------->RAP2.3(1) --------AGL15                     <---------ANAC46                             --------->ZAT18 -------->AGL2                   ------>ZmHOX2a(1)                     *TSS   <---------ABI4(2) <---- -------->AGL1                  <---------LBD16                      <------------CBF           <---- ---------AGL2                  --------->TOE2(2)                  <---------AHL20(2)           ----- ---------AGL1                 ----------->RAV1(2)                --------->AHL20(2)  --------->At4g35610 -------ANAC46        <----------DOF2                           <----------DOF2--------->DEAR3(1)----   actggtaaatttgaaggcccaaaactttgtttatcctgggtgtgaaactcaaaccctagaagaagactttaaattgaagaagcgccgtagcagcatttta  1329700                                                                    <---------DAG2                                               ------>ZmHOX2a(1)    <----------DOF2                                           <-----------GT1    <---------MYB46(3)                                  --------->WRKY38(1)        <---------ANAC46                                  --------->WRKY12          <---------MYB52(1)                                  --------->ETT(2)          --------->ATERF1(1)         <---------YAB1           <---------ETT(2)          <------NtERF2 -----TOE1(3)                     --------->DEAR3(1)       <---------SPL7 -----TOE2(3)                    <------NtERF2--------->TOE2(3) <---------MYB52(1)       ------>ZmHOX2a(1) ---->MYB59                      --------->ATERF1(1)       <-----------HVH21    <---------YAB1 ------->GT1                   <---------DEAR3(1)          <---------RAP2.6(3) <---------GLK1(2)  <--   ggttaaaacttattgttgattcttctctattcgtcgtcgacctattttcctcagccatggccgtcgggtacttttctctcagattattgtcctctcattt  1329800                      <---------TOE2(3)                     ---------->DOF2                   <---------YAB1                  --------->TOE2(3)                                                    <------ZmHOX2a(1)                 <--------HAHB4                                                       <------MYB83                 --------->YAB1                                                       <------MYB46(1)                <---------YAB1                                                       --------->MYB111(1)               <---------ARR11(1)                                                   <--------P            <---------ANAC55(2)                                          --------->GLK1(2)            --------->ANAC55(2)                                          <---------ARR14(2)     -----            <---------ANAC58           ------>ZmHOX2a(2)    <------ZmHOX2a(1)   <---------TOE1(3)            <---------ANAC58  <-----------HVH21    <---------ZAT14      <---------GLK1(2)      <----- ---------GT1 <---------CCA1(2)        ============================HOX2a_HOX2a  <---------TOE2(3)   ctactatctctgattcgtatcattaaagtatttgtcactgatctatgagtttgtttactgtaggaaaaacaagagaatctctaagggtaggaagggagga  1329900                                                                                                  ---                                                                                           ------->TEIL       <---------ANAC46                                                                 <---------YAB1       <---------ANAC58                                                              --------->ARR14(2)       <---------ANAC58                    ------>ZmHOX2a(1)          --------->ICU4 <---------ARR14(2) ----->DOF2           ------->TEIL        --------->TOE1(3)      <---------ZAT18     --------->GLK1(2) -ZmHOX2a(1)         <---------CCA1(2)    --------->TOE2(3)  --------->ATHB12    --------->YAB1  <---   aagaagaaggcgtaagtttttctgaatcttatttctcttgttttccttaacaatgtgtatgaattagtggccatgttgaagtatgagaatatgaatctta  1330000                <---------MYB46(3)              <---------ANAC58             <------MYB46(1)             <------MYB83             <---------MYB46(3)                                --------->ATHB12         --------->ATHB12                                   ---------->DOF2       <---------WOX13(1)                         ------>ZmHOX2a(1)<------MYB83             ---------     --------->ATHB12                           ------>ZmHOX2a(2)  <------MYB46(1)    ------>ZmHOX2a(1)    <---------YAB1                       <---------ZAT6   --------->ANAC46     <---------TOE2(3) ------>ATHB12<---------ANAC58           --------->ALFIN1 --------->ANAC58     <---------TOE1(3) ------YAB1<---------WOX13(1)    <-----------RAV1(1)      --------->ANAC58<---------YAB1    <--------   tcatttgtgattgattggttgtttttgaaaattgaatgttgcagtgttgatcctttctccaagaaagattggtatgatgttaaggctccttcaatcttca  1330100                             --------->LBD16---------->DOF2                            --------->HSFB2a(2)               --------->ANAC58    <-----------RAV1(2)                    <---------YAB1           <-               --------->ANAC58    <---------LBD16                      --------->YAB1          <----    <------ZmHOX2a(1)       <---------HSFB2a(2)                         <-----------GT1   <---------- >YAB1       ---------->DOF2<---------HSFC1(1)                       <---------ICU4 ------>ZmHOX2a(1) -ICU4 <---------HSFB2a(1)  --------->HSFC1(1)     --------->ICU4  <----------DOF2 --------->TOE2(3)<   ctcacaggaatgttggaaagacacttgtttccagaactcagggtaccaaagtaatgtttctgtctctctctttattacaatacatcctcaaattacttcg  1330200  Previous    Next  AGI:  At3g04830.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT5G28220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43029.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 1326233    to: 1329370    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g04840.1    Description:  40S ribosomal protein S3A (RPS3aA). Identical to 40S ribosomal protein S3a-1 (RPS3AA) [Arabidopsis Thaliana] (GB:Q9CAV0); similar to 40S ribosomal protein S3A (RPS3aB) [Arabidopsis thaliana] (TAIR:AT4G34670.1); similar to 40S ribosomal protein S3a (S phase-specific protein BIS289) (GB:P49396); contains InterPro domain Ribosomal protein S3Ae; (InterPro:IPR001593) Range:  from: 1329671    to: 1331623    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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