Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <-----------RAV1(2)                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                               --------->ANAC46                                                                              <---------LBD16                                                         --------->ANAC58<---------ARR14(2)                                                     ==========================HOX2a_HOX2a  ---------                                           --------->TOE2(3)            <------ZmHOX2a(1)   <--------              <---------HSFB2a(1)         <---------ANAC55(2) <----------DOF2 --------->LBD16      -- ---->ZmHOX2a(1)                  --------->YAB1     ------>ZmHOX2a(2)<---------TOE2(3)     --------- -------------AGL1  <---------ANAC46      ----------->GT1--------->ANAC58--------->ARR14(2) <--------   cctatatggaacaagaacgtttgtgtataagaagaagcataaaaacgtaaactgatctcacgacctttgtttgaggattccacggaagccagggagctgg  1325800                        <---------ZAT2                        --------->ZAT2                        --------->At4g35610                        <---------At4g35610                     --------->TGA2(2)                    <-----------HVH21                    <-----------TGA1                   <---------TGA1a                   ==========================================bZIP_DOF                   --------->O2                   --------->TGA1a                   <---------O2                   --------->ANAC46                   --------->ANAC58                   --------->ANAC58                                                   <---------At4g35610 >ZAT2             --------->bZIP60(2)                    ---------->ID1              --------->ZAT2 -ZAT2   <------ZmHOX2a(1) <-------TEIL       --------->TOE1(3)                       <---------ZAT2 --------->GT1   <---------ALFIN1          <---------CCA1(2)                          --------->At4g35610 >At4g35610<---------GLK1(1)--------->REM1(1) --------->TOE2(3)                 --------->WRKY38(1) -At4g35610--------->At4g35610<---------At4g35610 ---------->DOF2             <-------GAMYB   gagataaaacaggagatgcccacgtcagcttcatctactgttttcataccttcaaagtttgtagctatcgtcgctattttcgttgtccagctcaagctcg  1325900                                                                            ------>NtERF2                                                                           --------->ANAC58                                                                           <---------bZIP60(1)                                                                           --------->ANAC58                                                                           --------->bZIP60(1)                                                                           --------->bZIP60(2)                                                                          --------->ATERF1(1)                                                                          <------NtERF2                                                                         <---------ATERF1(1)                         --------->ANAC58                                ------>NtERF2                         --------->ANAC58                            <---------DEAR3(1)                     --------->ANAC58                               --------->SPL7                     --------->ANAC58                              --------->ARR14(2)                  <------NtERF2                            *TSS    --------->MYB52(1)                --------->ANAC58                      <---------ANAC58  --------->DEAR3(1)                --------->ANAC58                 --------->ATHB12--------->LBD16               --------->RAP2.6(3)         <---------AHL20(2)   --------->ANAC46                   --             <---------ARR14(2)     --------->AGP1    <---------ANAC58  <---------DEAR3(1)<---------ARR14(2)         <---------At4g35610  --------->ANAC58  <---------AHL20(2) <---------ARR14(2)     --------->ARR14(2)         --------->At4g35610  --------->ANAC58  <---------YAB1 <---------LBD16 <------------CBF -----   agtagggttttagcagagacggcaaacaagacaagacagttctacttaatttcattgccttcttcaccggaacggcgacgacattgaaatcgaatactca  1326000                                                                     --------->ARR11(3)                           ----------->HVH21                         <---------AHL20(2)                          <---------MYB59                            --------->AHL20(2)                         --------->At4g35610                         --------->AHL20(1)            <---------MYB46(3)       <------------CBF                <---------ARR11(3)            --------->MYB52(2)   --------->LBD16                     <---------AHL20(1)          <---------MYB52(1)   <---------LBD16            --------->MYB52(1)      ------->TEIL       <---------At4g35610             ------->GAMYB <---------GLK1(2)    <---------ABI4(2)  <---------WRKY18(1)              <---------MYB111(2)   --------->ANAC58   --------->WRKY38(1)               <---------MYB55(2)        ------>MYB83   --------->ANAC58   --------->WRKY12                  <---------MYB52(2)        ------>MYB46(1)   --------->ANAC46   ----------->HVH21       ------------>CBF      --------->AHL20(2) -------->DOF2      <------------CBF<---------MYB46(3)  --------->MYB46(3)      ------->GAMYB      -- ------>GT1--------->SPL7----------->RAV1(2) <-----------GT1 ----------->GT1    <---------MYB59 <----   gtaaaacgcaccgttcgttccccattgacctgacccggttattgatatttcaatcccaacaaaccgataaatatattctcaaccaaattgatataccaat  1326100                                                                           <-----------GT1                               --------->SPL7                        --------->ARR14(2)                              <---------MYB52(1)              <---------DEAR3(2)------>MYB83---------                            <---------ANAC58                 ------>ZmHOX2a(2)  --------->MYB52(1)                      <------NtERF2                          <---------DEAR3(1) --------->ARR14(2)                  --------->ANAC58                          <------ZmHOX2a(2)   ------>MYB46(1)          ----------->GT1   <---------ANAC58               --------->ARR14(2)   <---------ARR14(2) ----->TEIL       --------->ANAC58                         <---------ARR14(2) <---------MYB59    <--- -----ATHB12      --------->ANAC46------------>CBF   <-----------GT1 <---------ARR14(2)<-------TEIL   gaatcagatgttttgttaaaacgcagcgtttcgttcgtcaatatgctctaagtttaaaccagatcggtgcgaatattaaaccgaaccggttcatgtcaat  1326200                                                --------->CCA1(2)                                               <---------ARR11(3)                                               <---------ARR14(2)                                   --------->ZAT6              <---------TOE2(3)                       ------>ZmHOX2a(1)       --------->ARR14(2)       --------->HSFB2a(2)       ------>MYB46(1)<------ZmHOX2a(2)           --------->ARR14(2)       <---------HSFB2a(2)       *TSS     --------->MYB52(1)   <---------TOE1(3)   <----------DOF2     ================================HOX2a_HOX2a          <---------ARR14(2) --->CBF  ---------->DOF2  ------>ZmHOX2a(2)   --------->ARR11(3)  <-------TEIL ------ARR11(3)   <----------DOF2------>MYB83  --------->AGP1  --------->DAG2                  ------   gtcttctttgtagaaagagactttcctgatcgaccttccactactaacagatccacaaatttcataaggttcagagcaaatcggagagagagagatggtg  1326300                          ------>MYB83                        --------->AtMYB61                      >>>>>>>>>>MYB80                <---------ZAT6                ----------->GT1                                       <-----------ARR10              <-------TEIL------>MYB46(1)                             --------->GLK1(2)             --------->CCA1(2)                             --------->ALFIN1            <---------ARR14(2)                          <---------AtMYB61         <------ZmHOX2a(1)-------->P                   <------ZmHOX2a(1)                          <--  --------->MYB52(1) <-----------GT1                 --------->ALFIN1 --------->ARR14(2) <---------At4g35610 ----->TGA1 --------->ARR14(2)    --------->GLK1(2) <------ZmHOX2a(1) <---------ARR14(2) --------->At4g35610   acgaaaacggaggagatacagttaaaccaactcgagaatcaagttgagaatggaggaggaggtgtttgggagtatctgtgcctcgttcgtaagctcaagg  1326400                                                            ------>ZmHOX2a(2)                                                           <------ZmHOX2a(2)                                                    ---------->DOF2                                                 <---------HSFB2a(2)                                                 --------->HSFB2a(2)                                                <---------LBD16         <---------HSFB2a(2)                                              --------->GLK1(2)         <-----------RAV1(2)                                   --------->ARR11(3)     <---------ARR14(2)     <------ZmHOX2a(2)             <---------ARR11(3)     --------->ARR14(2)                     <---    <-----------HVH21  --------->YAB1        --------->ARR11(1)         --------->HSFB2a(2)      <---  --------->DEAR3(1) --------->ANAC58        <---------ARR14(2) <----------DOF2                  <--- -----TEIL           --------->ANAC58------>ZmHOX2a(2) <---------------------WRI1        <-----------GT1   ttcgccgatcagagattgtgctcaagcatggtctctcgatcttgaacgattcgggaaagcgatccgctcttggtccagatggtatgttgattttcagttc  1326500                                               ------>ZmHOX2a(1)     <---------ANAC58                                          --------->GLK1(1)   <---------ATHB12                                          <---------GLK1(1)  --------->ANAC46                                     <-------GAMYB           --------->ANAC58 ------ANAC58                       --------->MYB52(2)       --------->ANAC58             <---------AHL20(2) ------ANAC46                       <---------MYB46(3)     <---------ALFIN1               --------->AHL20(2) ------ANAC58   <---------YAB1<----------DOF2 --------->TOE2(3)      <---------ANAC58<-------TEIL   <   cttgatttcgatgtgtttctcattgagagtgtctttgtttgttgatttcctaaatcgtgctccactcaattgcttcaattcatgagtttcatttaaatga  1326600                                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                               --------->ARR11(3)                                                              <---------CCA1(2)<---------ARR14(2)                                                          --------->TOE2(3) =========================  <---------ANAC58                                  <---------ARR11(3)      <---------------AGL15  <---------ANAC55(2)                           --------->ANAC55(2)<---------At4g35610  <---------ANAC58                              <---------ANAC55(2)--------->At4g35610 <---------YAB1  <---------ANAC46                    <---------ANAC58   --------->ANAC46   --------------->AGL15---- ---------AHL20(2)                    <---------ANAC58------>ZmHOX2a(2)    <-----------------AGL2<---   aattacttgaaattcagtttgatattgttctacttccagtgcttactgatacttgatctacgttatatctgctcaatgctaaatctggtattcttggatt  1326700  Previous    Next  AGI:  At3g04820.1    Description:  RNA binding / pseudouridylate synthase/ tRNA-pseudouridine synthase. similar to unnamed protein product [Vitis vinifera] (GB:CAO43031.1); similar to hypothetical protein OsI_019879 [Oryza sativa (indica cultivar-group)] (GB:EAY98646.1); contains InterPro domain tRNA pseudouridine synthase D, core; (InterPro:IPR011760); contains InterPro domain tRNA pseudouridine synthase D, eukaryotic (InterPro:IPR017091); contains InterPro domain tRNA pseudouridine synthase D; (InterPro:IPR001656) Range:  from: 1321234    to: 1325959    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04830.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT5G28220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43029.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 1326233    to: 1329370    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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