Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------->ANAC58                                                                         --------->ANAC58 -------->ANAC58                                                                      <------NtERF2 ----->MYB46(3)                  --------->YAB1               <------ZmHOX2a(1) <---------LBD16 >ANAC58                    <-------TEIL                  --------->ICU4        <-----------RAV1(2) >ANAC46                   --------->CCA1(2)    <---------ANAC58         >>>>>>>>>>MYB80 --------->ANAC58 >ANAC58              ---------->DOF2           <---------ANAC58   <----------ID1  <------ZmHOX2a(1)<   caacgcattggcacaaacaaaactaaaagatacaatcgaaacaaaacatagcttattgaaatgaggagagagacaaaccatctcaggaggcaagtccaag  1325600                                                                  --------->TOE2(3)                                                                 --------->YAB1                                                            --------->ANAC46                                                            --------->ANAC58                                                       <---------ARR14(2)                          <---------ARR14(2)           --------->ARR14(2)                          --------->ARR14(2)           ------->TEIL                          <-----------ARR10            <---------ARR11(1)                          <---------ARR11(1)           <-----------ARR10                          <---------ARR11(3)          <---------CCA1(2)                <-----------GT1         --------->ZAT6<---------ARR14(1)           <---------ALFIN1            <---------TOE2(3) --------->TOE1(2)         ------->TEIL------>MYB46(1)  --------->YAB1<---------ANAC58             --------->DAG2        <-----------GT1  <---------CCA1(2)  ---------->DOF2 --------->ANAC58    ---------->DOF2    -- -----------HVH21    ------>MYB83  --------->TOE2(3)<---------ANAC58      ----------->GT1       <----   gatgtcaaatgaaccacattaccatccatatctacttcattaacaataaagtctgcgtatctacgaaacataaatacagaaaaaaagtttcaatttttct  1325700                                                                                      <-----------RAV1(2)                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                               --------->ANAC58                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                              <---------LBD16                                                         --------->ANAC58<---------ARR14(2)                                                     ------>ZmHOX2a(2)  <------ZmHOX2a(1)   <--------                                           --------->TOE2(3)          <---------TOE2(3)     ---------              <---------HSFB2a(1)         <---------ANAC55(2) <----------DOF2 --------->LBD16      -- ---->ZmHOX2a(1)                  --------->YAB1     ==========================HOX2a_HOX2a  <-------- -------------AGL1  <---------ANAC46      ----------->GT1--------->ANAC58--------->ARR14(2) ---------   cctatatggaacaagaacgtttgtgtataagaagaagcataaaaacgtaaactgatctcacgacctttgtttgaggattccacggaagccagggagctgg  1325800                        <---------At4g35610                        --------->ZAT2                        <---------ZAT2                        --------->At4g35610                     --------->TGA2(2)                    <-----------TGA1                    <-----------HVH21                   <---------TGA1a                   --------->bZIP60(2)                   --------->O2                   <---------O2                   --------->TGA1a                   ==========================================bZIP_DOF                   --------->ANAC58                   --------->ANAC58                                                   --------->At4g35610 -At4g35610        --------->ANAC46                       ---------->ID1              <---------At4g35610 >At4g35610<---------GLK1(1)--------->REM1(1) --------->TOE1(3)                       <---------ZAT2 --------->GT1   <---------ALFIN1             --------->TOE2(3)                       --------->ZAT2 -ZAT2     --------->At4g35610<---------At4g35610 ---------->DOF2               --------->WRKY38(1) >ZAT2   <------ZmHOX2a(1) <-------TEIL    <---------CCA1(2)                  <-------GAMYB   gagataaaacaggagatgcccacgtcagcttcatctactgttttcataccttcaaagtttgtagctatcgtcgctattttcgttgtccagctcaagctcg  1325900                                                                            ------>NtERF2                                                                           --------->bZIP60(1)                                                                           --------->bZIP60(2)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                           <---------bZIP60(1)                                                                          --------->ATERF1(1)                                                                          <------NtERF2                                                                         <---------ATERF1(1)                         --------->ANAC58                                ------>NtERF2                         --------->ANAC58                            <---------DEAR3(1)                     --------->ANAC58                               --------->SPL7                     --------->ANAC58                              <---------ARR14(2)                  <------NtERF2                            *TSS    --------->ARR14(2)                --------->ANAC58                      <---------ANAC58  --------->DEAR3(1)                --------->ANAC58                 --------->ATHB12--------->LBD16               --------->RAP2.6(3)         <---------AHL20(2)   --------->ANAC46                   --             <---------ARR14(2)     --------->AGP1    <---------ANAC58  <---------DEAR3(1)<---------ARR14(2)         --------->At4g35610  --------->ANAC58  <---------AHL20(2) --------->MYB52(1)     --------->ARR14(2)         <---------At4g35610  --------->ANAC58  <---------YAB1 <---------LBD16 <------------CBF -----   agtagggttttagcagagacggcaaacaagacaagacagttctacttaatttcattgccttcttcaccggaacggcgacgacattgaaatcgaatactca  1326000                                                                     --------->AHL20(2)                           ----------->HVH21                         <---------AHL20(2)                          <---------MYB59                            <---------AHL20(1)                         <---------At4g35610                         --------->ARR11(3)            <---------MYB46(3)       <------------CBF                <---------ARR11(3)            --------->MYB52(2)   --------->LBD16                     --------->AHL20(1)          <---------MYB52(1)   <---------LBD16            --------->MYB52(1)      ------->TEIL       --------->At4g35610             ------->GAMYB <---------GLK1(2)    <---------ABI4(2)  <---------WRKY18(1)              --------->MYB46(3)   --------->ANAC58   ----------->HVH21                 <---------MYB52(2)        ------>MYB83   --------->ANAC46   --------->WRKY38(1)               <---------MYB55(2)        ------>MYB46(1)   --------->ANAC58   --------->WRKY12        ------------>CBF      --------->AHL20(2) -------->DOF2      <------------CBF<---------MYB46(3)  <---------MYB111(2)     <---------MYB59    -- ------>GT1--------->SPL7----------->RAV1(2) <-----------GT1 ----------->GT1    ------->GAMYB   <----   gtaaaacgcaccgttcgttccccattgacctgacccggttattgatatttcaatcccaacaaaccgataaatatattctcaaccaaattgatataccaat  1326100                                                                           <-----------GT1                               --------->SPL7                        --------->ARR14(2)                              <---------MYB52(1)              <---------DEAR3(2)------>MYB46(1)                            <---------ANAC58                 ------>ZmHOX2a(2)  --------->ARR14(2)                      <------NtERF2                          <---------DEAR3(1) ------>MYB83---------                  --------->ANAC58                          <------ZmHOX2a(2)   <---------ARR14(2)          ----------->GT1   <---------ANAC58               <---------ARR14(2)   --------->MYB52(1) ----->TEIL       --------->ANAC58                         --------->ARR14(2) <---------MYB59    <--- -----ATHB12      --------->ANAC46------------>CBF   <-----------GT1 <---------ARR14(2)<-------TEIL   gaatcagatgttttgttaaaacgcagcgtttcgttcgtcaatatgctctaagtttaaaccagatcggtgcgaatattaaaccgaaccggttcatgtcaat  1326200                                                <------ZmHOX2a(2)                                               <---------ARR14(2)                                               --------->ARR14(2)                                   --------->ZAT6              --------->DAG2                       ------>ZmHOX2a(1)       --------->AGP1  <---------TOE1(3)       --------->HSFB2a(2)       ------>MYB83  --------->ARR11(3)       <---------HSFB2a(2)       ------>MYB46(1)--------->CCA1(2)           <---------ARR14(2)   <----------DOF2     ================================HOX2a_HOX2a          --------->ARR14(2) --->CBF  ---------->DOF2  ------>ZmHOX2a(2)   <---------ARR11(3)  <-------TEIL ------ARR11(3)   <----------DOF2*TSS     --------->MYB52(1)   <---------TOE2(3)               ------   gtcttctttgtagaaagagactttcctgatcgaccttccactactaacagatccacaaatttcataaggttcagagcaaatcggagagagagagatggtg  1326300                          -------->P                        --------->AtMYB61                      >>>>>>>>>>MYB80                ----------->GT1                <---------ZAT6                                        --------->ARR14(2)              <-------TEIL------>MYB83                                --------->GLK1(2)             --------->CCA1(2)                             --------->ALFIN1            --------->ARR14(2)                          <---------AtMYB61         <------ZmHOX2a(1)------>MYB46(1)              <------ZmHOX2a(1)                          <--  --------->MYB52(1) <-----------GT1                 --------->ALFIN1 <---------ARR14(2) --------->At4g35610 ----->TGA1 <---------ARR14(2)    --------->GLK1(2) <------ZmHOX2a(1) <-----------ARR10  <---------At4g35610   acgaaaacggaggagatacagttaaaccaactcgagaatcaagttgagaatggaggaggaggtgtttgggagtatctgtgcctcgttcgtaagctcaagg  1326400                                                            ------>ZmHOX2a(2)                                                           <------ZmHOX2a(2)                                                    ---------->DOF2                                                 --------->HSFB2a(2)                                                 <---------HSFB2a(2)                                                <---------LBD16         <---------HSFB2a(2)                                              --------->GLK1(2)         --------->HSFB2a(2)                                   --------->ARR11(3)     --------->ARR14(2)     <------ZmHOX2a(2)             <---------ARR11(3)     <---------ARR14(2)                     <---    <-----------HVH21  --------->YAB1        <---------ARR14(2)         <-----------RAV1(2)      <---  --------->DEAR3(1) --------->ANAC58        --------->ARR11(1) <----------DOF2                  <--- -----TEIL           --------->ANAC58------>ZmHOX2a(2) <---------------------WRI1        <-----------GT1   ttcgccgatcagagattgtgctcaagcatggtctctcgatcttgaacgattcgggaaagcgatccgctcttggtccagatggtatgttgattttcagttc  1326500  Previous    Next  AGI:  At3g04820.1    Description:  RNA binding / pseudouridylate synthase/ tRNA-pseudouridine synthase. similar to unnamed protein product [Vitis vinifera] (GB:CAO43031.1); similar to hypothetical protein OsI_019879 [Oryza sativa (indica cultivar-group)] (GB:EAY98646.1); contains InterPro domain tRNA pseudouridine synthase D, core; (InterPro:IPR011760); contains InterPro domain tRNA pseudouridine synthase D, eukaryotic (InterPro:IPR017091); contains InterPro domain tRNA pseudouridine synthase D; (InterPro:IPR001656) Range:  from: 1321234    to: 1325959    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04830.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT5G28220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43029.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 1326233    to: 1329370    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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