Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                              <XXXXXX             <---------ICU4                                                            --------->CCA1(2)             --------->YAB1                                                           --------->ARR11(3)            <<<<<<<<<ARR2                                                             <---------ARR11(3)            <---------ATHB12                                                          --------->ARR11(1)            <---------YAB1                                                            --------->ARR14(2)            <<<<<<<<<ARR1                        --------->YAB1                       <---------ARR14(2)          --------->WOX13(1)                    <---------ATHB12                  ---------->DOF2 ----------GT1                        <---------ARR11(3)                     --------------->AGL15   tttacagatagacaatcatagcaaacacaaacagtttcaagaactcaccaataacaaaaacttgtatacagacatacaactacataaagatatggaacat  1312700                                        <---------ANAC58                                         ----                                        <---------ANAC46                                         ----                                        ==================bZIP_DOF                            <------ZmHOX2a(2)                                        <---------TGA1a                                      <-------               <---------ANAC58         <---------ANAC58                            --------->ARR11(3)       <---------MYB52(2)          ----------->GT1       --------->ARR11(3)         --------->GLK1(2)       --------->MYB46(3)         --------->DAG2  <---------MYB46(3)             <---------AHL20(2) --->TOE1(2)   <---------ANAC58---------->DOF2 <----------DOF2              <---------ATHB12 -------- XXXXXXXXXXXXXXMIR4239         ===================bZIP_DOF       --------->ANAC46--------->AHL20(2)   aagagaataacaaacctgcttgagagcattgggcaaagagtgacttgagctttggttaagacattcaacaccagaccagtcaataaaatctagtagatca  1312800                                                                                     --------->MYB52(1)                    ------->GAMYB                                                    ----------->RAV1(1)                    --------->AtMYB61                                               --------->MYB46(3)                   --------->MYB46(3)                                          <-------TEIL                  --------->ANAC58                                            --------->CCA1(2)                  --------->ANAC58                                            --------->ARR14(1)                 ------->GAMYB                                               <---------ARR14(2)                --------->MYB46(3)                                           <---------GLK1(2) --->TEIL       <---------MYB111(2)                                          --------->ARR14(2) ---->P         <---------MYB55(2)                     --------->bZIP60(2)   --------->ARR11(1) --ARR11(3)--------->ANAC46               <-----------GT1                  <---------YAB1 ->ARR11(3)--------->YAB1                --------->AHL20(2)             <---------ATHB12   acctgataatcaaacacaacaaccaaaacttagatagaatcgattaactatatagacacatcagaaaacttcaaatcaagattcgaacaacagataagaa  1312900                                                                    --------->DOF5.7(2)                                                                    <---------MYB52(1)                                                                   --------->TOE1(3)                                                                   --------->TOE2(3)                --------->MYB46(3)                         ---------->DOF2     <-----------HVH21               --------->ANAC58                          ------>MYB46(1)<---------MYB46(2)         <-               --------->ANAC46  --------->ATHB12        ------>MYB83 <---------DOF5.7(2)          <-               --------->ANAC58 <---------------AGL15   ----------->RAV1(1) ----------->RAV1(2)    --             <---------ALFIN1   ------>ZmHOX2a(1)       ================================RAV     <----      <-----------ARR10         <---------YAB1  <---------------------WRI1 -------->P   <------ZmHOX2a(1)      --------->GLK1(2)         --------------->AGL15 --------->MYB46(3)<---------MYB52(2)      <----   <---------ARR11(3)      <---------GLK1(1) --------->MYB46(3)   <---------ANAC46  <---------MYB52(1)   ccctagataatcttcccacccaagaattgaattcctcattgaagaaaaccatcgaaaccaacaaagtttcgttaactaacctgtcccttaggaatttggc  1313000           ------>NtERF2           <------NtERF2          ----------->HVH21        <---------LBD16        --------->At4g35610                                      ---------->DOF2        <---------At4g35610                                   <---------HSFB2a(2)      <---------DEAR3(1)                                      --------->HSFB2a(2)             -------   <---------ARR14(2)                                       <------ZmHOX2a(2)    --------------------   --------->ARR14(2)                                      <---------ARR11(3)  <---------ATHB51 *TSS --------ZAT2                                       --------->TOE2(3)          <---------AHL20(2)   < --------At4g35610                               --------->GLK1(1)   --------->ALFIN1         ------- ------->At4g35610                          ---------->DOF2--------->ARR11(3)  --------->AHL20(2)   - -----ANAC58                            <----------DOF2---------->DOF2         --------->ICU4-------- -----ANAC58                     <-----------GT1 <---------GLK1(1)--------->DAG2<---------ICU4-------   tagctgattcggcggacatcgcgagtttttttttttttcttcctttgaaagaaatctcaaagatcgagaaagtggaagaaaataattagactctccacga  1313100                                                                                                   --     <---------------AGL15                                                                         --    ----------------->AGL2                                                                         --    ----------------->AG                                                                           <-    ----------------->AGL3                                                                         <-  ------>MYB83                                                             <------MYB83            <-  ------>MYB46(1)                                                          <------MYB46(1)         <- -->ANAC46                                                               <---------WOX13(1)       --- --->TaNAC69(2)        <-----------GT1          --------->ANAC58        <------------CBF   <--------- ---------MYB59 <-----------TBP                 --------->ANAC46       --------->ATHB12    <---------ARR11(3) -->ANAC58  ----------->GT1        ---------->DOF2                    <---------YAB1       --------->ARR11(3) -------->AtMYB61 --------->AHL20(2)   <----------ID1          <-----------GT1           <---------YAB1 ->LBD16 ---------->DOF2         <---------HSFB2a(2)          <-----------GT1       ----------->GT1<- -->ANAC58 <---------TOE2(3) --------->ZAT14    --------->ANAC58 --------->ZAT6    <---------TOE1(2)-   aaccaaaccaaaaaaggtttttatataactctgttctcaaagaaacaaaaacgacatcgtatatttaacactctgattggtttagcaggttattatcttc  1313200   ------->GAMYB ------>MYB46(1) ------>MYB83 ------->GAMYB -------->P  <---------MYB111(2) ------->MYB46(3) ------->DEAR3(1) ------->AtMYB61 --------MYB111(2) --------MYB55(2) --------MYB46(2)                                                                             ------- --------MYB111(1)                                                                            ------- ------>MYB46(3) --------->TOE2(3)                  ------>MYB83                    ------>MYB46(1) --GT1       --------->MYB46(3) ------------>CBF    ------>MYB46(1)                 ------>MYB83  --- --------ALFIN1  --------->TOE1(3)               --------->MYB46(3)  <---------ANAC58         ------- -------->MYB55(1)    --------->ZAT6       --------->ANAC46          <---------ANAC58  ------>ZmHOX2a(1)   accaacccaaatacaacaaccttaaaactagtattccaatactaccctcaaaccaactacaaaactctataacttgccactaaaccttcctcttccactc  1313300                                            --------->MYB46(3)                                            <---------ATHB12                                           ------>MYB46(1)                         <---------TOE1(2)                                           -------->P                             ------>ZmHOX2a(1)                      *TSS                 ------>MYB83                     ------>ZmHOX2a(1)                    <------------------------ANAC81                        <---------ANAC58         <            ------>MYB83               --------->HSFB2a(2)                 <------------------------ANAC81 -->ANAC58  ------>MYB46(1)      <-----------GT1                           --------->TOE2(3)     <--- -->ANAC46--------->AtMYB61  --------->AHL20(2)                        <---------ANAC58--------->ARR14(2) ------->DOF2  <---------DAG2<---------AHL20(1)          ------>ZmHOX2a(1) <---------ANAC58------>ZmHOX2a(1) -->ANAC58<---------MYB59    <---------AHL20(2)  --------->TOE2(3)     <---------ANAC58<---------ARR14(2)   aaaagtcaaaaaccaaacctttcgatttcattttatttcttctccaaccattctcaatcctctctctccaatggcttccttatccttcgtttcctcttct  1313400                                   <---------ALFIN1          <---------MYB52(1)                                  --------->ZAT2        --------->TOE2(2)             --------->ANAC58     <---------ZAT14       --------->TOE1(2)          <---------ZAT18         <---------ZAT2       --------->MYB46(3)         --------->ANAC58       --------->ANAC46       --------->HSFB2a(1)         --------->ANAC58     --------->ANAC58         --------->HSFC1(2)    --------->ANAC58          --------->ANAC58         <---------HSFB2a(1)    --------->ANAC58          --------->ANAC46         <---------HSFC1(2)             --------->ANAC46    --------->ANAC46       <---------SPL7             ------->TEIL        <---------WRKY12   --------->SPL7       --------->ZAT18            --------->TOE1(1)     <---------MYB52(1) <---------SPL7         <---------ZAT18           <---------HSFB2a(2)    --------->WRKY18(1)   <----- ---------DAG2   ------>ZmHOX2a(1)--------->ZAT14 --------->HSFB2a(2)   <-----------HVH21     <------ --------GT1 --------->ANAC58--------->SPL7       ------>ZmHOX2a(1)    --------->ANAC46<-----------HVH21   caccttacgctacgcactccttctattgccctacgcagcactggctcttctcctcgaacctccgtttcattctccgtcaaggctcaatccgtcgcgcttt  1313500                                                                                         <---------ZAT2                                                                                         <---------At4g35610                                                                                         --------->At4g35610                                                                                     --------->DEAR3(1)                                                                                 ------>ZmHOX2a(2)                                                               >>>>>>>ZML2       --------->MYB46(3)                                <---------ZAT2                 --------->HSFB2a(2)  --------->ANAC46                                <---------At4g35610       <---------HSFC1(2)     <---------ABI4(2)                             ---------->DOF2              <---------HSFB2a(1)   <------ZmHOX2a(2)                          <------NtERF2                   --------->HSFB2a(1)  --------->ARR14(2)                         --------->LBD16                  --------->HSFC1(2)   <---------TCP20                        <---------DEAR3(1)                <------MYB83         <---------TCP16(1)                        <---------ANAC46                  <------MYB46(1)      <---------ARR14(2)                       <------NtERF2               --------->TOE2(2)          <---------ARR14(1)                       --------->ATERF1(1)         --------->TOE1(2)     <---------ARR14(2)                       ------>NtERF2              ----------->RAV1(2)    --------->ARR14(2)                       <---------LBD16        --------->AHL20(2)      --------->ANAC58   --------->ZAT2                     <---------DEAR3(1)    --------->WOX13(1)  <---------HSFB2a(2)<---------ALFIN1  <------ZmHOX2a(1) <---------LBD16      <------NtERF2    <---------MYB46(3) --------->LBD16      <-- ------HVH21    --------->At4g35610 --------->ALFIN1     <---------AtMYB61 <---------LBD16 <--------- ----DOF2       --------->ZAT2  --------->At4g35610<---------LBD16    --------->ANAC58--------->LBD16   cacaggacgatttgaagaagctcgcggcggagaaagctgtggaggcaattaaacctgggatggttctagggctcggaaccggatccaccgcagctttcgc  1313600  Previous    Next  AGI:  At3g04780.1    Description:  Identical to UPF0424 protein At3g04780 [Arabidopsis Thaliana] (GB:Q9SQZ9;GB:Q93Z56;GB:Q9CAU6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43036.1); contains InterPro domain Protein of unknown function DUF1000 (InterPro:IPR010400); contains InterPro domain Thioredoxin family (InterPro:IPR015467) Range:  from: 1311253    to: 1313096    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04790.1    Description:  ribose 5-phosphate isomerase-related. similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43035.1); contains InterPro domain Ribose 5-phosphate isomerase; (InterPro:IPR004788) Range:  from: 1313322    to: 1315249    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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