Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                            ------>MYB83                                                                                      ----------->HVH21                                                                                     <---------MYB59                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC55(2)                                 <---------ZAT2         <---------CCA1(2)           ----------->RAV1(2)                                 --------->ZAT2<---------ANAC58                    --------->MYB52(1)  <----------DOF2            --------->TOE1(3) <---------ANAC58                   <-----------GT1 ---->YAB1                  --------->ZAT6----------->HVH21                   --------->AHL20(2)    - -----ICU4             --------->YAB1   <---------At4g35610                 ----------->GT1 ------>MYB46(1) --->ICU4             --------->REM1(1) --------->At4g35610          <---------WOX13(1)   <---------MYB59 ----ATHB51     <---------WOX13(1)      ----------->RAV1(2) <----------DOF2 <---------ANAC55(2)------   atgtcttttgggttttcgattgctacaataaccctagcagccatctgaagcttgtcccatgtctttccaagattgattatgtaaatacctgaccaaataa  1310500                                                                                   --------->ZAT6                                                                                 ------>MYB46(1)                                                                                 ------>MYB83                                                                                 ----------->RAV1(1)                              <------ZmHOX2a(2)                                 --------->ANAC46                              --------->CCA1(2)                                <---------MYB59                             --------->ARR14(2)                                --------->MYB46(3)                             <---------ARR14(2)                               --------->ANAC46                             <---------ARR11(3)                               --------->ANAC58 -->AHL20(2)                 --------->AGP1                                   --------->ANAC58 -------->AHL20(2)           --------->ARR11(3)                       --------->At4g35610 --->AHL20(2)            ---------->DOF2                              <---------At4g35610   aaaaaaatccaaacttcataaacaaaaaaaagatccaaaaacatcacaaaactctatgaaaccgagaattacagatgaatacccaacactatggaaactg  1310600                        --------->REM1(2)                     <---------ANAC55(1)                     <---------ANAC55(2)                     --------->O2                     <---------ANAC46                     <---------ANAC58                     <---------ANAC58                                           <---------AtLEC2                    <-------TEIL                                            >>>>>>>>>CBP60g                 <---------At4g35610          <---------ANAC46              >>>>>>>>>SARD1                 --------->At4g35610          <---------ANAC58          --------->YAB1                --------->ANAC58      <---------ARR14(2)                --------->AHL20(2)         <-                --------->ANAC58------->TEIL  <---------ANAC58 <---------------AtSPL8             <--   gagaaactatcaattcgtaagctacgtgtagatgaatgtggaaacgttgcttctatatagaattacatgtacaatgaaatttggatgaagatgagatagt  1310700         <---------ANAC58         <---------ANAC58         <---------ANAC46      <------NtERF2     <-----------HVH21    <---------DEAR3(1)                       <-----------------AGL3                              <---    --------->O2                    ----------->HVH21                                           <----    <---------O2                  <---------At4g35610                                           -----  <-----------HVH21      ---------->DOF2--------->MYB52(2)                           --------->At4g35610 --------At5g28300       --------->MYB52(1)  <-----------------AGL1     <---------At4g35610--------->GLK1(1) ---------GT1<----------DOF2------->GAMYB    ----------------->AGL1     --------->At4g35610<---------GLK1(1)   ttaccgtcgtcgcgtcttttgaagacataacgctccatctgatagttgcagtttttggtaccaaggtgaacatcggctgataacatcatctggatatcag  1310800                           <------NtERF2                          <---------ATERF1(1)                          ------>NtERF2                          <-----------HVH21                         --------->DEAR3(1)                         --------->RAP2.3(2)                         <---------O2                         --------->O2                        --------->RRTF1(1)                        <------NtERF2                        --------->RAP2.3(1)                       --------->LBD16                       ------>NtERF2         <------NtERF2                      --------->ANAC46      ------>NtERF2                    --------->SPL7         --------->DEAR3(1)                  <-----------HVH21        --------->RAP2.3(2)                  <---------SPL7           <---------ATERF1(2)                 <---------bZIP60(1)       --------->RAP2.6(2)                 <---------TGA1a           --------->DREB2C(2)                 --------->bZIP60(1)       --------->RAP2.3(3)                 <---------bZIP60(2)       --------->ANAC46                 --------->TGA1a           --------->ATERF1(2)                 <---------ANAC58          --------->RRTF1(2)                 --------->O2              --------->RRTF1(3)                 <---------ANAC58         --------->RAP2.3(1)            ----------->RAV1(2)           --------->ERF1            --------->ANAC55(2)           --------->ATERF1(1)            <---------ANAC55(2)           --------->ORA47(2) <----------DOF2 <---------O2            <---------RAP2.3(1) ==========================bZIP_DOF      <---------ATERF1(1)           <----------DOF2 ------GLK1(2)----------->HVH21        --------->SPL7      ---------->ID1                    -------- -----At4g35610<---------TGA2(2)      <---------MYB52(1)  <-----------GT1                    *TSS ---->At4g35610--------->MYB52(1)    <---------SPL7   <---------MYB52(1)        <----------DOF2   cttctttctctgatacctgacgtcccgccgtcgctactccgttcgccgccattttcgttttttcgctctgtttctttctcttctttcgaaacccctaaag  1310900                                 --------->TOE2(3)                                 ----------------->AG                          --------->LBD16                         --------->HSFB2a(2)                         <---------HSFB2a(2)                        <---------LBD16                   <---------GLK1(2)                                                         <-------                   <---------ARR11(3)                                                        <-------                   --------->ARR11(3)                                                        --------                   --------->ARR14(2)            --------->ANAC58                            --------                   <---------ARR14(2)            --------->ANAC58                        --------->AHL20(1)                 ----------->ARR10             ---------->DOF2                           --------->AHL20(2)                 <---------YAB1  --------->TOE1(3)                  --------->ARR11(3)   <---------AHL20(2) -->DOF2         <---------TOE2(3)          <----------DOF2         >>>>>>>>>>GT-1      --------->AHL20(2)   agtgtttcgcttaagaattaagatactccggaaaaccctaaatgggctttcaagcccaaaaccaaaaaatgatatagcccaaaaccaaaaattaattaat  1311000                                                          <---------ICU4                                               <---------RVE1(1)                       <---------ATHB12                                              <---------ARR11(3)                   <---------YAB1        ---------->DOF2        <---------AHL20(2)        ------>ZmHOX2a(1)   --------->ICU4 <-------- --AHL20(2)                   --------->AHL20(2)       --------->YAB1      ----------->GT1  --------- --AHL20(1)     --------->AHL20(2)            <---------GLK1(2)        <---------YAB1--------->WOX13(1) ->AHL20(2)   ----------->GT1 --------->YAB1----------->ARR10     <<<<<<<<<SARD1<---------YAB1 ->AHL20(1) ---------->DOF2  <---------ATHB12 --------->ARR11(3)  <<<<<<<<<CBP60g--------->YAB1   tgttttcagacaaagaaagaaaataatcccaataaaaatgctcagtaagatttttaatcctaattccaaatttctaatagttattataaatcaagatttc  1311100                                                                 --------->YAB1                                                             <---------ICU4                                                            --------->ICU4                                                            <---------YAB1          <---------ICU4                                                          <--------HAHB4            <-----------GT1      ------>ZmHOX2a(2)            <---------ICU4         --------->YAB1           --------->ICU4    <---------AGP1          --------->ZAT6                <---------ICU4  <---------ANAC58 -ARR11(3)   --------->AHL20(2)    <-----------GT1       <---------ATHB12 <---------ANAC58        <-- >ARR11(3)   <---------AHL20(2) --------->YAB1           <---------YAB1 <-----------GT1------->GAMYB<   atattggatctatgtttaattaagagtttaagactaataactatttgatgcctagttctatcattattcatattttacttgtgtaataactgcctcataa  1311200       <---------DAG2                    ---------->DOF2       <----------DOF2               --------->YAB1  --------->ANAC58                ---------->DOF2  --------->ANAC46             --------->ANAC58                      <---------ICU4  --------->ANAC58             --------->ANAC58        ----------------->AGL1 -------AHL20(2)               --------->ANAC46      ------>ZmHOX2a(1)         <---------YAB1 -----------GT1       --------->GLK1(2)--------->CCA1(2)           <---------TOE2(3)   ataaacgcccttttccccctcaagaatatgaacacacaaagataaaagttgagtcctgcccaaactgttaagaattgcaagatgattttcaaattgactt  1311300                              --------->YAB1                           --------->WOX13(1)                 ----------->GT1                        --------->ANAC58                    ---------->DOF2                        --------->ANAC58         <---------YAB1                ------>ZmHOX2a(1)                <---------AHL20(2)                    --------->ANAC58               --------->TOE2(2)    <---------ARR14(2) <---------------AGL15           --------->ANAC46               --------->TOE1(2)    --------->ARR14(2) --------------->AGL15 --------->MYB52(1)  ----           <---------GLK1(1) <---------ATHB12   --------->AHL20(2)          --------->TOE1(2)   <----  <---------TOE1(2)  --------->ARR14(2)         <---------AHL20(2)----------->GT1      --------->ANAC58 ------>ZmHOX2a(1)   <---------ARR14(2)        --------->YAB1--------->DAG2<---------MYB52(2)   -----   atccttcgtttcgaattcctgcgaataggcaatcacaagttctggtctattttaattcaaaaaaaagtaagtaaaaaacaaacgatgaaacgcaatagaa  1311400  Previous    Next  AGI:  At3g04770.1    Description:  RPSAB (40S RIBOSOMAL PROTEIN SA B); structural constituent of ribosome. Identical to 40S ribosomal protein Sa-2 (RPSaB) [Arabidopsis Thaliana] (GB:Q8H173;GB:Q8LB49;GB:Q8S9I1;GB:Q96317); similar to P40 (40S ribosomal protein SA), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G72370.2); similar to P40 (40S ribosomal protein SA), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G72370.1); similar to 40S ribosomal protein SA (p40) (Laminin receptor-like protein) (GB:Q9ZSR8); contains InterPro domain Ribosomal protein S2, eukaryotic/archaeal; (InterPro:IPR005707); contains InterPro domain Ribosomal protein S Range:  from: 1309300    to: 1310893    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04780.1    Description:  Identical to UPF0424 protein At3g04780 [Arabidopsis Thaliana] (GB:Q9SQZ9;GB:Q93Z56;GB:Q9CAU6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43036.1); contains InterPro domain Protein of unknown function DUF1000 (InterPro:IPR010400); contains InterPro domain Thioredoxin family (InterPro:IPR015467) Range:  from: 1311253    to: 1313096    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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